data_7PP1 # _model_server_result.job_id W9Vg2kuFtkvjMl8gIM5sjw _model_server_result.datetime_utc '2024-10-18 15:29:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 7PP1 # _exptl.entry_id 7PP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.618 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Selatogrel _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.48 _cell.angle_gamma 90 _cell.entry_id 7PP1 _cell.length_a 98.09 _cell.length_b 155.37 _cell.length_c 47.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 26 _struct_conn.ptnr1_auth_asym_id AAA _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 17 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 385 _struct_conn.ptnr2_auth_asym_id AAA _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 270 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.038 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H39 N6 O8 P' _chem_comp.formula_weight 618.618 _chem_comp.id 7Y5 _chem_comp.mon_nstd_flag . _chem_comp.name Selatogrel _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[(2~{R})-3-(4-butoxycarbonylpiperazin-1-yl)-2-[[6-[(3~{S})-3-methoxypyrrolidin-1-yl]-2-phenyl-pyrimidin-4-yl]carbonylamino]-3-oxidanylidene-propyl]phosphonic acid;[(2R)-3-(4-butoxycarbonylpiperazin-1-yl)-2-[[6-[(3S)-3-methoxypyrrolidin-1-yl]-2-phenyl-pyrimidin-4-yl]carbonylamino]-3-oxidanylidene-propyl]phosphonic acid;4-((R)-2-((6-((S)-3-Methoxypyrrolidin-1-yl)-2-phenylpyrimidine-4-carbonyl)amino)-3-phosphonopropionyl)piperazine-1-carboxylic acid butyl ester' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C19 7Y5 doub 1 n y C18 C17 7Y5 sing 2 n y C19 C20 7Y5 sing 3 n y C17 C16 7Y5 doub 4 n y C20 C21 7Y5 doub 5 n y C27 O5 7Y5 sing 6 n n C16 C21 7Y5 sing 7 n y C16 C15 7Y5 sing 8 n n O5 C26 7Y5 sing 9 n n C25 C26 7Y5 sing 10 n n C25 N6 7Y5 sing 11 n n N5 C15 7Y5 doub 12 n y N5 C22 7Y5 sing 13 n y C15 N4 7Y5 sing 14 n y C26 C24 7Y5 sing 15 n n N6 C22 7Y5 sing 16 n n N6 C23 7Y5 sing 17 n n C22 C28 7Y5 doub 18 n y N4 C14 7Y5 doub 19 n y C24 C23 7Y5 sing 20 n n C28 C14 7Y5 sing 21 n y C14 C13 7Y5 sing 22 n n N3 C13 7Y5 sing 23 n n N3 C11 7Y5 sing 24 n n C13 O6 7Y5 doub 25 n n O3 P1 7Y5 doub 26 n n O2 P1 7Y5 sing 27 n n O7 C10 7Y5 doub 28 n n C12 P1 7Y5 sing 29 n n C12 C11 7Y5 sing 30 n n P1 O4 7Y5 sing 31 n n C11 C10 7Y5 sing 32 n n C10 N2 7Y5 sing 33 n n N2 C7 7Y5 sing 34 n n N2 C9 7Y5 sing 35 n n C7 C6 7Y5 sing 36 n n C9 C8 7Y5 sing 37 n n C6 N1 7Y5 sing 38 n n C8 N1 7Y5 sing 39 n n N1 C5 7Y5 sing 40 n n O1 C5 7Y5 sing 41 n n O1 C4 7Y5 sing 42 n n C5 O8 7Y5 doub 43 n n C2 C1 7Y5 sing 44 n n C2 C3 7Y5 sing 45 n n C4 C3 7Y5 sing 46 n n N3 H1 7Y5 sing 47 n n C4 H2 7Y5 sing 48 n n C4 H3 7Y5 sing 49 n n C6 H4 7Y5 sing 50 n n C6 H5 7Y5 sing 51 n n C7 H6 7Y5 sing 52 n n C7 H7 7Y5 sing 53 n n C8 H8 7Y5 sing 54 n n C8 H9 7Y5 sing 55 n n C17 H10 7Y5 sing 56 n n C20 H11 7Y5 sing 57 n n C21 H12 7Y5 sing 58 n n C24 H13 7Y5 sing 59 n n C24 H14 7Y5 sing 60 n n C26 H15 7Y5 sing 61 n n C28 H16 7Y5 sing 62 n n C1 H17 7Y5 sing 63 n n C1 H18 7Y5 sing 64 n n C1 H19 7Y5 sing 65 n n C2 H20 7Y5 sing 66 n n C2 H21 7Y5 sing 67 n n C3 H22 7Y5 sing 68 n n C3 H23 7Y5 sing 69 n n C9 H24 7Y5 sing 70 n n C9 H25 7Y5 sing 71 n n C11 H26 7Y5 sing 72 n n C12 H27 7Y5 sing 73 n n C12 H28 7Y5 sing 74 n n O2 H29 7Y5 sing 75 n n O4 H30 7Y5 sing 76 n n C18 H31 7Y5 sing 77 n n C19 H32 7Y5 sing 78 n n C23 H33 7Y5 sing 79 n n C23 H34 7Y5 sing 80 n n C25 H35 7Y5 sing 81 n n C25 H36 7Y5 sing 82 n n C27 H37 7Y5 sing 83 n n C27 H38 7Y5 sing 84 n n C27 H39 7Y5 sing 85 n n # _atom_sites.entry_id 7PP1 _atom_sites.fract_transf_matrix[1][1] 0.010195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004012 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7Y5 AAA 1 1201 1201 7Y5 LIG . C 3 CLR AAA 1 1202 1202 CLR CLR . D 4 HOH AAA 1 1301 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 7Y5 . . . B 2 -24.477 23.749 32.023 1 91.76 0 N1 7Y5 1201 AAA 1 HETATM 2 N N3 7Y5 . . . B 2 -23.168 27.407 26.88 1 88.11 0 N3 7Y5 1201 AAA 1 HETATM 3 C C4 7Y5 . . . B 2 -25.915 21.168 34.005 1 94.46 0 C4 7Y5 1201 AAA 1 HETATM 4 C C5 7Y5 . . . B 2 -25.195 23.196 33.026 1 95.5 0 C5 7Y5 1201 AAA 1 HETATM 5 C C6 7Y5 . . . B 2 -23.713 22.985 31.028 1 90.05 0 C6 7Y5 1201 AAA 1 HETATM 6 C C7 7Y5 . . . B 2 -23.994 23.49 29.638 1 90.17 0 C7 7Y5 1201 AAA 1 HETATM 7 C C8 7Y5 . . . B 2 -24.302 25.201 31.914 1 94.25 0 C8 7Y5 1201 AAA 1 HETATM 8 C C10 7Y5 . . . B 2 -23.408 25.465 28.368 1 90.17 0 C10 7Y5 1201 AAA 1 HETATM 9 C C13 7Y5 . . . B 2 -22.233 28.335 26.926 1 90.27 0 C13 7Y5 1201 AAA 1 HETATM 10 C C15 7Y5 . . . B 2 -21.635 28.491 23.323 1 81.85 0 C15 7Y5 1201 AAA 1 HETATM 11 C C17 7Y5 . . . B 2 -21.71 28.186 20.824 1 66.43 0 C17 7Y5 1201 AAA 1 HETATM 12 C C20 7Y5 . . . B 2 -23.341 25.961 21.061 1 63.06 0 C20 7Y5 1201 AAA 1 HETATM 13 C C21 7Y5 . . . B 2 -22.919 26.633 22.203 1 68.2 0 C21 7Y5 1201 AAA 1 HETATM 14 C C22 7Y5 . . . B 2 -20.4 30.175 24.259 1 110.77 0 C22 7Y5 1201 AAA 1 HETATM 15 C C24 7Y5 . . . B 2 -18.528 33.218 24.807 1 125 0 C24 7Y5 1201 AAA 1 HETATM 16 C C26 7Y5 . . . B 2 -18.627 33.247 23.329 1 125.74 0 C26 7Y5 1201 AAA 1 HETATM 17 C C28 7Y5 . . . B 2 -20.85 29.82 25.523 1 99.93 0 C28 7Y5 1201 AAA 1 HETATM 18 C C1 7Y5 . . . B 2 -23.583 18.187 34.265 1 94.77 0 C1 7Y5 1201 AAA 1 HETATM 19 C C2 7Y5 . . . B 2 -24.713 19.042 33.754 1 95.72 0 C2 7Y5 1201 AAA 1 HETATM 20 C C3 7Y5 . . . B 2 -24.966 20.229 34.65 1 94.46 0 C3 7Y5 1201 AAA 1 HETATM 21 O O1 7Y5 . . . B 2 -25.176 21.859 32.968 1 97.03 0 O1 7Y5 1201 AAA 1 HETATM 22 C C9 7Y5 . . . B 2 -24.584 25.674 30.528 1 87.16 0 C9 7Y5 1201 AAA 1 HETATM 23 N N2 7Y5 . . . B 2 -23.76 24.937 29.56 1 89.05 0 N2 7Y5 1201 AAA 1 HETATM 24 C C11 7Y5 . . . B 2 -23.821 26.913 28.057 1 90.32 0 C11 7Y5 1201 AAA 1 HETATM 25 C C12 7Y5 . . . B 2 -25.328 27.025 27.811 1 95.86 0 C12 7Y5 1201 AAA 1 HETATM 26 P P1 7Y5 . . . B 2 -26.004 28.642 28.223 1 105.61 0 P1 7Y5 1201 AAA 1 HETATM 27 O O2 7Y5 . . . B 2 -27.353 28.753 27.517 1 110.22 0 O2 7Y5 1201 AAA 1 HETATM 28 O O3 7Y5 . . . B 2 -25.009 29.683 27.71 1 106.9 0 O3 7Y5 1201 AAA 1 HETATM 29 O O4 7Y5 . . . B 2 -26.143 28.684 29.74 1 109.47 0 O4 7Y5 1201 AAA 1 HETATM 30 C C14 7Y5 . . . B 2 -21.702 28.752 25.593 1 92.08 0 C14 7Y5 1201 AAA 1 HETATM 31 N N4 7Y5 . . . B 2 -22.12 28.08 24.51 1 90.15 0 N4 7Y5 1201 AAA 1 HETATM 32 C C16 7Y5 . . . B 2 -22.086 27.757 22.103 1 72.51 0 C16 7Y5 1201 AAA 1 HETATM 33 C C18 7Y5 . . . B 2 -22.138 27.507 19.689 1 60.05 0 C18 7Y5 1201 AAA 1 HETATM 34 C C19 7Y5 . . . B 2 -22.947 26.399 19.808 1 57.76 0 C19 7Y5 1201 AAA 1 HETATM 35 N N5 7Y5 . . . B 2 -20.784 29.52 23.146 1 95.69 0 N5 7Y5 1201 AAA 1 HETATM 36 N N6 7Y5 . . . B 2 -19.545 31.235 24.076 1 121.24 0 N6 7Y5 1201 AAA 1 HETATM 37 C C23 7Y5 . . . B 2 -18.658 31.74 25.133 1 121.26 0 C23 7Y5 1201 AAA 1 HETATM 38 C C25 7Y5 . . . B 2 -19.766 32.271 23.068 1 120.97 0 C25 7Y5 1201 AAA 1 HETATM 39 O O5 7Y5 . . . B 2 -18.872 34.538 22.772 1 131.3 0 O5 7Y5 1201 AAA 1 HETATM 40 C C27 7Y5 . . . B 2 -18.159 34.778 21.55 1 130.88 0 C27 7Y5 1201 AAA 1 HETATM 41 O O6 7Y5 . . . B 2 -21.842 28.838 27.976 1 94.88 0 O6 7Y5 1201 AAA 1 HETATM 42 O O7 7Y5 . . . B 2 -22.774 24.817 27.541 1 90.76 0 O7 7Y5 1201 AAA 1 HETATM 43 O O8 7Y5 . . . B 2 -25.781 23.833 33.868 1 100.91 0 O8 7Y5 1201 AAA 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #