data_7PP8
#
_model_server_result.job_id            pkFWp3SStzjXlePn-Q0l4A 
_model_server_result.datetime_utc      '2025-01-18 12:20:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pp8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":502}' 
#
_entry.id    7PP8 
#
_exptl.entry_id    7PP8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PP8 
_cell.length_a            150.641 
_cell.length_b            150.641 
_cell.length_c            325.261 
_cell.Z_PDB               64 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PP8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 95 A SER 76 1_555 I P MHH . A MHH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.579 ? 
covale ? covale2 B OG SER 95 B SER 76 1_555 J P MHH . B MHH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? 
covale ? covale3 C OG SER 95 C SER 76 1_555 O P MHH . C MHH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? 
covale ? covale4 D OG SER 95 D SER 76 1_555 S P MHH . D MHH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.586 ? 
covale ? covale5 E OG SER 95 E SER 76 1_555 T P MHH . E MHH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.593 ? 
covale ? covale6 F OG SER 95 F SER 76 1_555 U P MHH . F MHH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? 
covale ? covale7 G OG SER 95 G SER 76 1_555 V P MHH . G MHH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? 
covale ? covale8 H OG SER 95 H SER 76 1_555 W P MHH . H MHH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.593 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7PP8 
_atom_sites.fract_transf_matrix[1][1]    0.006638 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006638 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003074 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 MHH A 1 501 501 MHH MHH . 
J 2 MHH B 1 501 501 MHH MHH . 
K 3 GOL C 1 501 501 GOL GOL . 
L 3 GOL C 1 502 502 GOL GOL . 
M 3 GOL C 1 503 503 GOL GOL . 
N 4 PEG C 1 504 504 PEG PEG . 
O 2 MHH C 1 505 505 MHH MHH . 
P 3 GOL D 1 501 501 GOL GOL . 
Q 3 GOL D 1 502 502 GOL GOL . 
R 3 GOL D 1 503 503 GOL GOL . 
S 2 MHH D 1 504 504 MHH MHH . 
T 2 MHH E 1 501 501 MHH MHH . 
U 2 MHH F 1 501 501 MHH MHH . 
V 2 MHH G 1 501 501 MHH MHH . 
W 2 MHH H 1 501 501 MHH MHH . 
X 5 HOH A 1 601 601 HOH HOH . 
X 5 HOH A 2 602 602 HOH HOH . 
X 5 HOH A 3 603 603 HOH HOH . 
X 5 HOH A 4 604 604 HOH HOH . 
X 5 HOH A 5 605 605 HOH HOH . 
X 5 HOH A 6 606 606 HOH HOH . 
X 5 HOH A 7 607 607 HOH HOH . 
X 5 HOH A 8 608 608 HOH HOH . 
X 5 HOH A 9 609 609 HOH HOH . 
X 5 HOH A 10 610 610 HOH HOH . 
X 5 HOH A 11 611 611 HOH HOH . 
X 5 HOH A 12 612 612 HOH HOH . 
X 5 HOH A 13 613 613 HOH HOH . 
X 5 HOH A 14 614 614 HOH HOH . 
X 5 HOH A 15 615 615 HOH HOH . 
X 5 HOH A 16 616 616 HOH HOH . 
X 5 HOH A 17 617 617 HOH HOH . 
X 5 HOH A 18 618 618 HOH HOH . 
X 5 HOH A 19 619 619 HOH HOH . 
X 5 HOH A 20 620 620 HOH HOH . 
X 5 HOH A 21 621 621 HOH HOH . 
X 5 HOH A 22 622 622 HOH HOH . 
X 5 HOH A 23 623 623 HOH HOH . 
X 5 HOH A 24 624 624 HOH HOH . 
Y 5 HOH B 1 601 601 HOH HOH . 
Y 5 HOH B 2 602 602 HOH HOH . 
Y 5 HOH B 3 603 603 HOH HOH . 
Y 5 HOH B 4 604 604 HOH HOH . 
Y 5 HOH B 5 605 605 HOH HOH . 
Y 5 HOH B 6 606 606 HOH HOH . 
Y 5 HOH B 7 607 607 HOH HOH . 
Y 5 HOH B 8 608 608 HOH HOH . 
Y 5 HOH B 9 609 609 HOH HOH . 
Y 5 HOH B 10 610 610 HOH HOH . 
Y 5 HOH B 11 611 611 HOH HOH . 
Y 5 HOH B 12 612 612 HOH HOH . 
Y 5 HOH B 13 613 613 HOH HOH . 
Y 5 HOH B 14 614 614 HOH HOH . 
Y 5 HOH B 15 615 615 HOH HOH . 
Y 5 HOH B 16 616 616 HOH HOH . 
Y 5 HOH B 17 617 617 HOH HOH . 
Y 5 HOH B 18 618 618 HOH HOH . 
Y 5 HOH B 19 619 619 HOH HOH . 
Y 5 HOH B 20 620 620 HOH HOH . 
Y 5 HOH B 21 621 621 HOH HOH . 
Y 5 HOH B 22 622 622 HOH HOH . 
Y 5 HOH B 23 623 623 HOH HOH . 
Y 5 HOH B 24 624 624 HOH HOH . 
Y 5 HOH B 25 625 625 HOH HOH . 
Y 5 HOH B 26 626 626 HOH HOH . 
Y 5 HOH B 27 627 627 HOH HOH . 
Y 5 HOH B 28 628 628 HOH HOH . 
Y 5 HOH B 29 629 629 HOH HOH . 
Y 5 HOH B 30 630 630 HOH HOH . 
Y 5 HOH B 31 631 631 HOH HOH . 
Z 5 HOH C 1 601 601 HOH HOH . 
Z 5 HOH C 2 602 602 HOH HOH . 
Z 5 HOH C 3 603 603 HOH HOH . 
Z 5 HOH C 4 604 604 HOH HOH . 
Z 5 HOH C 5 605 605 HOH HOH . 
Z 5 HOH C 6 606 606 HOH HOH . 
Z 5 HOH C 7 607 607 HOH HOH . 
Z 5 HOH C 8 608 608 HOH HOH . 
Z 5 HOH C 9 609 609 HOH HOH . 
Z 5 HOH C 10 610 610 HOH HOH . 
Z 5 HOH C 11 611 611 HOH HOH . 
Z 5 HOH C 12 612 612 HOH HOH . 
Z 5 HOH C 13 613 613 HOH HOH . 
Z 5 HOH C 14 614 614 HOH HOH . 
Z 5 HOH C 15 615 615 HOH HOH . 
Z 5 HOH C 16 616 616 HOH HOH . 
Z 5 HOH C 17 617 617 HOH HOH . 
Z 5 HOH C 18 618 618 HOH HOH . 
Z 5 HOH C 19 619 619 HOH HOH . 
Z 5 HOH C 20 620 620 HOH HOH . 
Z 5 HOH C 21 621 621 HOH HOH . 
Z 5 HOH C 22 622 622 HOH HOH . 
Z 5 HOH C 23 623 623 HOH HOH . 
AA 5 HOH D 1 601 601 HOH HOH . 
AA 5 HOH D 2 602 602 HOH HOH . 
AA 5 HOH D 3 603 603 HOH HOH . 
AA 5 HOH D 4 604 604 HOH HOH . 
AA 5 HOH D 5 605 605 HOH HOH . 
AA 5 HOH D 6 606 606 HOH HOH . 
AA 5 HOH D 7 607 607 HOH HOH . 
AA 5 HOH D 8 608 608 HOH HOH . 
AA 5 HOH D 9 609 609 HOH HOH . 
AA 5 HOH D 10 610 610 HOH HOH . 
AA 5 HOH D 11 611 611 HOH HOH . 
AA 5 HOH D 12 612 612 HOH HOH . 
AA 5 HOH D 13 613 613 HOH HOH . 
AA 5 HOH D 14 614 614 HOH HOH . 
AA 5 HOH D 15 615 615 HOH HOH . 
AA 5 HOH D 16 616 616 HOH HOH . 
AA 5 HOH D 17 617 617 HOH HOH . 
AA 5 HOH D 18 618 618 HOH HOH . 
AA 5 HOH D 19 619 619 HOH HOH . 
AA 5 HOH D 20 620 620 HOH HOH . 
AA 5 HOH D 21 621 621 HOH HOH . 
AA 5 HOH D 22 622 622 HOH HOH . 
AA 5 HOH D 23 623 623 HOH HOH . 
AA 5 HOH D 24 624 624 HOH HOH . 
AA 5 HOH D 25 625 625 HOH HOH . 
AA 5 HOH D 26 626 626 HOH HOH . 
AA 5 HOH D 27 627 627 HOH HOH . 
AA 5 HOH D 28 628 628 HOH HOH . 
AA 5 HOH D 29 629 629 HOH HOH . 
AA 5 HOH D 30 630 630 HOH HOH . 
AA 5 HOH D 31 631 631 HOH HOH . 
AA 5 HOH D 32 632 632 HOH HOH . 
AA 5 HOH D 33 633 633 HOH HOH . 
AA 5 HOH D 34 634 634 HOH HOH . 
AA 5 HOH D 35 635 635 HOH HOH . 
AA 5 HOH D 36 636 636 HOH HOH . 
BA 5 HOH E 1 601 601 HOH HOH . 
BA 5 HOH E 2 602 602 HOH HOH . 
BA 5 HOH E 3 603 603 HOH HOH . 
BA 5 HOH E 4 604 604 HOH HOH . 
BA 5 HOH E 5 605 605 HOH HOH . 
BA 5 HOH E 6 606 606 HOH HOH . 
BA 5 HOH E 7 607 607 HOH HOH . 
BA 5 HOH E 8 608 608 HOH HOH . 
BA 5 HOH E 9 609 609 HOH HOH . 
BA 5 HOH E 10 610 610 HOH HOH . 
BA 5 HOH E 11 611 611 HOH HOH . 
BA 5 HOH E 12 612 612 HOH HOH . 
BA 5 HOH E 13 613 613 HOH HOH . 
BA 5 HOH E 14 614 614 HOH HOH . 
BA 5 HOH E 15 615 615 HOH HOH . 
BA 5 HOH E 16 616 616 HOH HOH . 
BA 5 HOH E 17 617 617 HOH HOH . 
BA 5 HOH E 18 618 618 HOH HOH . 
BA 5 HOH E 19 619 619 HOH HOH . 
BA 5 HOH E 20 620 620 HOH HOH . 
BA 5 HOH E 21 621 621 HOH HOH . 
BA 5 HOH E 22 622 622 HOH HOH . 
BA 5 HOH E 23 623 623 HOH HOH . 
BA 5 HOH E 24 624 624 HOH HOH . 
BA 5 HOH E 25 625 625 HOH HOH . 
CA 5 HOH F 1 601 601 HOH HOH . 
CA 5 HOH F 2 602 602 HOH HOH . 
CA 5 HOH F 3 603 603 HOH HOH . 
CA 5 HOH F 4 604 604 HOH HOH . 
CA 5 HOH F 5 605 605 HOH HOH . 
CA 5 HOH F 6 606 606 HOH HOH . 
CA 5 HOH F 7 607 607 HOH HOH . 
CA 5 HOH F 8 608 608 HOH HOH . 
CA 5 HOH F 9 609 609 HOH HOH . 
CA 5 HOH F 10 610 610 HOH HOH . 
CA 5 HOH F 11 611 611 HOH HOH . 
CA 5 HOH F 12 612 612 HOH HOH . 
CA 5 HOH F 13 613 613 HOH HOH . 
CA 5 HOH F 14 614 614 HOH HOH . 
CA 5 HOH F 15 615 615 HOH HOH . 
CA 5 HOH F 16 616 616 HOH HOH . 
CA 5 HOH F 17 617 617 HOH HOH . 
CA 5 HOH F 18 618 618 HOH HOH . 
CA 5 HOH F 19 619 619 HOH HOH . 
CA 5 HOH F 20 620 620 HOH HOH . 
CA 5 HOH F 21 621 621 HOH HOH . 
CA 5 HOH F 22 622 622 HOH HOH . 
CA 5 HOH F 23 623 623 HOH HOH . 
CA 5 HOH F 24 624 624 HOH HOH . 
DA 5 HOH G 1 601 601 HOH HOH . 
DA 5 HOH G 2 602 602 HOH HOH . 
DA 5 HOH G 3 603 603 HOH HOH . 
DA 5 HOH G 4 604 604 HOH HOH . 
DA 5 HOH G 5 605 605 HOH HOH . 
DA 5 HOH G 6 606 606 HOH HOH . 
DA 5 HOH G 7 607 607 HOH HOH . 
DA 5 HOH G 8 608 608 HOH HOH . 
DA 5 HOH G 9 609 609 HOH HOH . 
DA 5 HOH G 10 610 610 HOH HOH . 
DA 5 HOH G 11 611 611 HOH HOH . 
DA 5 HOH G 12 612 612 HOH HOH . 
DA 5 HOH G 13 613 613 HOH HOH . 
DA 5 HOH G 14 614 614 HOH HOH . 
EA 5 HOH H 1 601 601 HOH HOH . 
EA 5 HOH H 2 602 602 HOH HOH . 
EA 5 HOH H 3 603 603 HOH HOH . 
EA 5 HOH H 4 604 604 HOH HOH . 
EA 5 HOH H 5 605 605 HOH HOH . 
EA 5 HOH H 6 606 606 HOH HOH . 
EA 5 HOH H 7 607 607 HOH HOH . 
EA 5 HOH H 8 608 608 HOH HOH . 
EA 5 HOH H 9 609 609 HOH HOH . 
EA 5 HOH H 10 610 610 HOH HOH . 
EA 5 HOH H 11 611 611 HOH HOH . 
EA 5 HOH H 12 612 612 HOH HOH . 
EA 5 HOH H 13 613 613 HOH HOH . 
EA 5 HOH H 14 614 614 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . Q 3 28.717 -12.5 40.387 1 74.95 ? C1 GOL 502 D 1 
HETATM 2 O O1 GOL . . . Q 3 29.195 -11.163 40.578 1 70.67 ? O1 GOL 502 D 1 
HETATM 3 C C2 GOL . . . Q 3 27.242 -12.717 40.726 1 70.27 ? C2 GOL 502 D 1 
HETATM 4 O O2 GOL . . . Q 3 27.089 -14.033 41.272 1 59.52 ? O2 GOL 502 D 1 
HETATM 5 C C3 GOL . . . Q 3 26.638 -11.67 41.658 1 67.03 ? C3 GOL 502 D 1 
HETATM 6 O O3 GOL . . . Q 3 25.226 -11.503 41.498 1 59.32 ? O3 GOL 502 D 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    89 
_model_server_stats.query_time_ms           471 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#