data_7PPL # _model_server_result.job_id sWaaqqf2jtVV-lKxjo65cA _model_server_result.datetime_utc '2025-03-23 23:09:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ppl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 7PPL # _exptl.entry_id 7PPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PPL _cell.length_a 54.886 _cell.length_b 81.802 _cell.length_c 147.629 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ASP 7 B ASP 631 1_555 B N PTR 8 B PTR 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 B C PTR 8 B PTR 632 1_555 B N MET 9 B MET 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 137 n n C1 C2 GOL sing 138 n n C1 H11 GOL sing 139 n n C1 H12 GOL sing 140 n n O1 HO1 GOL sing 141 n n C2 O2 GOL sing 142 n n C2 C3 GOL sing 143 n n C2 H2 GOL sing 144 n n O2 HO2 GOL sing 145 n n C3 O3 GOL sing 146 n n C3 H31 GOL sing 147 n n C3 H32 GOL sing 148 n n O3 HO3 GOL sing 149 n n # _atom_sites.entry_id 7PPL _atom_sites.fract_transf_matrix[1][1] 0.01822 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012225 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 1 GOL GOL . D 3 GOL A 1 302 2 GOL GOL . E 3 GOL A 1 303 3 GOL GOL . F 3 GOL A 1 304 4 GOL GOL . G 3 GOL A 1 305 5 GOL GOL . H 4 EOH A 1 306 6 EOH EOH . I 5 HOH A 1 401 133 HOH HOH . I 5 HOH A 2 402 39 HOH HOH . I 5 HOH A 3 403 117 HOH HOH . I 5 HOH A 4 404 51 HOH HOH . I 5 HOH A 5 405 28 HOH HOH . I 5 HOH A 6 406 105 HOH HOH . I 5 HOH A 7 407 138 HOH HOH . I 5 HOH A 8 408 36 HOH HOH . I 5 HOH A 9 409 80 HOH HOH . I 5 HOH A 10 410 47 HOH HOH . I 5 HOH A 11 411 93 HOH HOH . I 5 HOH A 12 412 81 HOH HOH . I 5 HOH A 13 413 53 HOH HOH . I 5 HOH A 14 414 2 HOH HOH . I 5 HOH A 15 415 143 HOH HOH . I 5 HOH A 16 416 125 HOH HOH . I 5 HOH A 17 417 136 HOH HOH . I 5 HOH A 18 418 101 HOH HOH . I 5 HOH A 19 419 9 HOH HOH . I 5 HOH A 20 420 147 HOH HOH . I 5 HOH A 21 421 91 HOH HOH . I 5 HOH A 22 422 26 HOH HOH . I 5 HOH A 23 423 55 HOH HOH . I 5 HOH A 24 424 63 HOH HOH . I 5 HOH A 25 425 29 HOH HOH . I 5 HOH A 26 426 7 HOH HOH . I 5 HOH A 27 427 16 HOH HOH . I 5 HOH A 28 428 1 HOH HOH . I 5 HOH A 29 429 3 HOH HOH . I 5 HOH A 30 430 109 HOH HOH . I 5 HOH A 31 431 18 HOH HOH . I 5 HOH A 32 432 22 HOH HOH . I 5 HOH A 33 433 44 HOH HOH . I 5 HOH A 34 434 65 HOH HOH . I 5 HOH A 35 435 108 HOH HOH . I 5 HOH A 36 436 123 HOH HOH . I 5 HOH A 37 437 4 HOH HOH . I 5 HOH A 38 438 17 HOH HOH . I 5 HOH A 39 439 132 HOH HOH . I 5 HOH A 40 440 43 HOH HOH . I 5 HOH A 41 441 40 HOH HOH . I 5 HOH A 42 442 60 HOH HOH . I 5 HOH A 43 443 21 HOH HOH . I 5 HOH A 44 444 56 HOH HOH . I 5 HOH A 45 445 37 HOH HOH . I 5 HOH A 46 446 103 HOH HOH . I 5 HOH A 47 447 20 HOH HOH . I 5 HOH A 48 448 131 HOH HOH . I 5 HOH A 49 449 142 HOH HOH . I 5 HOH A 50 450 38 HOH HOH . I 5 HOH A 51 451 5 HOH HOH . I 5 HOH A 52 452 100 HOH HOH . I 5 HOH A 53 453 12 HOH HOH . I 5 HOH A 54 454 97 HOH HOH . I 5 HOH A 55 455 58 HOH HOH . I 5 HOH A 56 456 139 HOH HOH . I 5 HOH A 57 457 11 HOH HOH . I 5 HOH A 58 458 19 HOH HOH . I 5 HOH A 59 459 15 HOH HOH . I 5 HOH A 60 460 61 HOH HOH . I 5 HOH A 61 461 66 HOH HOH . I 5 HOH A 62 462 116 HOH HOH . I 5 HOH A 63 463 129 HOH HOH . I 5 HOH A 64 464 24 HOH HOH . I 5 HOH A 65 465 134 HOH HOH . I 5 HOH A 66 466 152 HOH HOH . I 5 HOH A 67 467 89 HOH HOH . I 5 HOH A 68 468 25 HOH HOH . I 5 HOH A 69 469 30 HOH HOH . I 5 HOH A 70 470 67 HOH HOH . I 5 HOH A 71 471 86 HOH HOH . I 5 HOH A 72 472 62 HOH HOH . I 5 HOH A 73 473 45 HOH HOH . I 5 HOH A 74 474 23 HOH HOH . I 5 HOH A 75 475 159 HOH HOH . I 5 HOH A 76 476 88 HOH HOH . I 5 HOH A 77 477 148 HOH HOH . I 5 HOH A 78 478 35 HOH HOH . I 5 HOH A 79 479 95 HOH HOH . I 5 HOH A 80 480 77 HOH HOH . I 5 HOH A 81 481 127 HOH HOH . I 5 HOH A 82 482 157 HOH HOH . I 5 HOH A 83 483 113 HOH HOH . I 5 HOH A 84 484 46 HOH HOH . I 5 HOH A 85 485 150 HOH HOH . I 5 HOH A 86 486 10 HOH HOH . I 5 HOH A 87 487 13 HOH HOH . I 5 HOH A 88 488 75 HOH HOH . I 5 HOH A 89 489 79 HOH HOH . I 5 HOH A 90 490 54 HOH HOH . I 5 HOH A 91 491 33 HOH HOH . I 5 HOH A 92 492 73 HOH HOH . I 5 HOH A 93 493 92 HOH HOH . I 5 HOH A 94 494 158 HOH HOH . I 5 HOH A 95 495 90 HOH HOH . I 5 HOH A 96 496 34 HOH HOH . I 5 HOH A 97 497 83 HOH HOH . I 5 HOH A 98 498 27 HOH HOH . I 5 HOH A 99 499 8 HOH HOH . I 5 HOH A 100 500 118 HOH HOH . I 5 HOH A 101 501 128 HOH HOH . I 5 HOH A 102 502 124 HOH HOH . I 5 HOH A 103 503 120 HOH HOH . I 5 HOH A 104 504 50 HOH HOH . I 5 HOH A 105 505 41 HOH HOH . I 5 HOH A 106 506 31 HOH HOH . I 5 HOH A 107 507 122 HOH HOH . I 5 HOH A 108 508 153 HOH HOH . I 5 HOH A 109 509 71 HOH HOH . I 5 HOH A 110 510 102 HOH HOH . I 5 HOH A 111 511 119 HOH HOH . I 5 HOH A 112 512 48 HOH HOH . I 5 HOH A 113 513 96 HOH HOH . I 5 HOH A 114 514 49 HOH HOH . I 5 HOH A 115 515 6 HOH HOH . I 5 HOH A 116 516 87 HOH HOH . I 5 HOH A 117 517 57 HOH HOH . I 5 HOH A 118 518 98 HOH HOH . I 5 HOH A 119 519 99 HOH HOH . I 5 HOH A 120 520 135 HOH HOH . I 5 HOH A 121 521 115 HOH HOH . I 5 HOH A 122 522 42 HOH HOH . I 5 HOH A 123 523 140 HOH HOH . I 5 HOH A 124 524 112 HOH HOH . I 5 HOH A 125 525 68 HOH HOH . I 5 HOH A 126 526 126 HOH HOH . I 5 HOH A 127 527 114 HOH HOH . I 5 HOH A 128 528 130 HOH HOH . I 5 HOH A 129 529 111 HOH HOH . I 5 HOH A 130 530 82 HOH HOH . I 5 HOH A 131 531 94 HOH HOH . I 5 HOH A 132 532 52 HOH HOH . I 5 HOH A 133 533 110 HOH HOH . I 5 HOH A 134 534 85 HOH HOH . I 5 HOH A 135 535 32 HOH HOH . I 5 HOH A 136 536 59 HOH HOH . I 5 HOH A 137 537 84 HOH HOH . I 5 HOH A 138 538 72 HOH HOH . I 5 HOH A 139 539 155 HOH HOH . I 5 HOH A 140 540 141 HOH HOH . I 5 HOH A 141 541 76 HOH HOH . I 5 HOH A 142 542 160 HOH HOH . I 5 HOH A 143 543 137 HOH HOH . I 5 HOH A 144 544 70 HOH HOH . I 5 HOH A 145 545 146 HOH HOH . I 5 HOH A 146 546 145 HOH HOH . I 5 HOH A 147 547 64 HOH HOH . I 5 HOH A 148 548 106 HOH HOH . I 5 HOH A 149 549 74 HOH HOH . I 5 HOH A 150 550 104 HOH HOH . I 5 HOH A 151 551 78 HOH HOH . I 5 HOH A 152 552 154 HOH HOH . I 5 HOH A 153 553 156 HOH HOH . I 5 HOH A 154 554 69 HOH HOH . I 5 HOH A 155 555 107 HOH HOH . I 5 HOH A 156 556 149 HOH HOH . I 5 HOH A 157 557 144 HOH HOH . J 5 HOH B 1 701 14 HOH HOH . J 5 HOH B 2 702 121 HOH HOH . J 5 HOH B 3 703 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 -10.505 24.606 -0.437 1 61.36 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . G 3 -11.084 25.598 -1.25 1 63.09 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . G 3 -10.722 25.032 1.024 1 57.34 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . G 3 -10.04 24.206 1.914 1 51.86 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . G 3 -10.217 26.503 1.054 1 58.95 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . G 3 -11.129 27.271 1.795 1 58.11 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 1100 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 6 #