data_7PPN # _model_server_result.job_id BiW6FXOl31G_7qgD9pywqQ _model_server_result.datetime_utc '2025-07-17 11:49:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ppn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7PPN # _exptl.entry_id 7PPN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PPN _cell.length_a 54.19 _cell.length_b 82.363 _cell.length_c 147.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PPN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ASP 8 B ASP 190 1_555 B N PTR 9 B PTR 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C PTR 9 B PTR 191 1_555 B N MET 10 B MET 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7PPN _atom_sites.fract_transf_matrix[1][1] 0.018454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 1 GOL GOL . D 4 HOH A 1 401 37 HOH HOH . D 4 HOH A 2 402 40 HOH HOH . D 4 HOH A 3 403 36 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 29 HOH HOH . D 4 HOH A 7 407 28 HOH HOH . D 4 HOH A 8 408 32 HOH HOH . D 4 HOH A 9 409 15 HOH HOH . D 4 HOH A 10 410 38 HOH HOH . D 4 HOH A 11 411 48 HOH HOH . D 4 HOH A 12 412 26 HOH HOH . D 4 HOH A 13 413 3 HOH HOH . D 4 HOH A 14 414 22 HOH HOH . D 4 HOH A 15 415 42 HOH HOH . D 4 HOH A 16 416 49 HOH HOH . D 4 HOH A 17 417 35 HOH HOH . D 4 HOH A 18 418 27 HOH HOH . D 4 HOH A 19 419 21 HOH HOH . D 4 HOH A 20 420 33 HOH HOH . D 4 HOH A 21 421 23 HOH HOH . D 4 HOH A 22 422 7 HOH HOH . D 4 HOH A 23 423 20 HOH HOH . D 4 HOH A 24 424 1 HOH HOH . D 4 HOH A 25 425 11 HOH HOH . D 4 HOH A 26 426 47 HOH HOH . D 4 HOH A 27 427 2 HOH HOH . D 4 HOH A 28 428 50 HOH HOH . D 4 HOH A 29 429 16 HOH HOH . D 4 HOH A 30 430 12 HOH HOH . D 4 HOH A 31 431 30 HOH HOH . D 4 HOH A 32 432 46 HOH HOH . D 4 HOH A 33 433 14 HOH HOH . D 4 HOH A 34 434 18 HOH HOH . D 4 HOH A 35 435 43 HOH HOH . D 4 HOH A 36 436 31 HOH HOH . D 4 HOH A 37 437 13 HOH HOH . D 4 HOH A 38 438 9 HOH HOH . D 4 HOH A 39 439 19 HOH HOH . D 4 HOH A 40 440 24 HOH HOH . D 4 HOH A 41 441 45 HOH HOH . D 4 HOH A 42 442 6 HOH HOH . D 4 HOH A 43 443 44 HOH HOH . D 4 HOH A 44 444 34 HOH HOH . D 4 HOH A 45 445 41 HOH HOH . D 4 HOH A 46 446 25 HOH HOH . D 4 HOH A 47 447 39 HOH HOH . D 4 HOH A 48 448 17 HOH HOH . D 4 HOH A 49 449 8 HOH HOH . D 4 HOH A 50 450 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 20.723 19.441 -5.076 1 66.2 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 3 19.773 20.389 -5.481 1 64.31 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 3 20.701 18.278 -6.105 1 65.68 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 3 21.292 18.612 -7.305 1 66.1 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 3 19.208 17.898 -6.262 1 67.32 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 3 19.172 16.621 -6.842 1 67.34 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #