data_7PPY
#
_model_server_result.job_id            s3GGK6G7EyCceWhz2M4L4g 
_model_server_result.datetime_utc      '2024-12-01 22:56:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ppy 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":504}' 
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_entry.id    7PPY 
#
_exptl.entry_id    7PPY 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PPY 
_cell.length_a            74.677 
_cell.length_b            98.823 
_cell.length_c            206.981 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7PPY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 L N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 S N N 
? 3 T N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 166 n n 
C1 C2 EDO sing 167 n n 
C1 H11 EDO sing 168 n n 
C1 H12 EDO sing 169 n n 
O1 HO1 EDO sing 170 n n 
C2 O2 EDO sing 171 n n 
C2 H21 EDO sing 172 n n 
C2 H22 EDO sing 173 n n 
O2 HO2 EDO sing 174 n n 
#
_atom_sites.entry_id                     7PPY 
_atom_sites.fract_transf_matrix[1][1]    0.013391 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010119 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004831 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 7ZH A 1 501 2 7ZH GJI . 
F 3 EDO A 1 502 1333 EDO EDO . 
G 3 EDO A 1 503 1334 EDO EDO . 
H 3 EDO A 1 504 1338 EDO EDO . 
I 3 EDO A 1 505 1339 EDO EDO . 
J 2 7ZH B 1 501 3 7ZH GJI . 
K 3 EDO B 1 502 1332 EDO EDO . 
L 3 EDO B 1 503 1337 EDO EDO . 
M 2 7ZH C 1 501 1 7ZH GJI . 
N 3 EDO C 1 502 1331 EDO EDO . 
O 3 EDO C 1 503 1335 EDO EDO . 
P 3 EDO C 1 504 1336 EDO EDO . 
Q 3 EDO C 1 505 1341 EDO EDO . 
R 2 7ZH D 1 501 4 7ZH GJI . 
S 3 EDO D 1 502 1330 EDO EDO . 
T 3 EDO D 1 503 1340 EDO EDO . 
U 4 HOH A 1 601 93 HOH HOH . 
U 4 HOH A 2 602 75 HOH HOH . 
U 4 HOH A 3 603 24 HOH HOH . 
U 4 HOH A 4 604 2 HOH HOH . 
U 4 HOH A 5 605 52 HOH HOH . 
U 4 HOH A 6 606 8 HOH HOH . 
U 4 HOH A 7 607 69 HOH HOH . 
U 4 HOH A 8 608 57 HOH HOH . 
U 4 HOH A 9 609 6 HOH HOH . 
U 4 HOH A 10 610 48 HOH HOH . 
U 4 HOH A 11 611 13 HOH HOH . 
U 4 HOH A 12 612 36 HOH HOH . 
U 4 HOH A 13 613 74 HOH HOH . 
U 4 HOH A 14 614 64 HOH HOH . 
U 4 HOH A 15 615 95 HOH HOH . 
U 4 HOH A 16 616 90 HOH HOH . 
U 4 HOH A 17 617 7 HOH HOH . 
U 4 HOH A 18 618 108 HOH HOH . 
U 4 HOH A 19 619 44 HOH HOH . 
U 4 HOH A 20 620 58 HOH HOH . 
U 4 HOH A 21 621 96 HOH HOH . 
U 4 HOH A 22 622 86 HOH HOH . 
U 4 HOH A 23 623 18 HOH HOH . 
U 4 HOH A 24 624 45 HOH HOH . 
U 4 HOH A 25 625 77 HOH HOH . 
U 4 HOH A 26 626 42 HOH HOH . 
U 4 HOH A 27 627 27 HOH HOH . 
U 4 HOH A 28 628 47 HOH HOH . 
U 4 HOH A 29 629 14 HOH HOH . 
U 4 HOH A 30 630 39 HOH HOH . 
U 4 HOH A 31 631 19 HOH HOH . 
V 4 HOH B 1 601 71 HOH HOH . 
V 4 HOH B 2 602 5 HOH HOH . 
V 4 HOH B 3 603 84 HOH HOH . 
V 4 HOH B 4 604 79 HOH HOH . 
V 4 HOH B 5 605 3 HOH HOH . 
V 4 HOH B 6 606 56 HOH HOH . 
V 4 HOH B 7 607 60 HOH HOH . 
V 4 HOH B 8 608 59 HOH HOH . 
V 4 HOH B 9 609 26 HOH HOH . 
V 4 HOH B 10 610 15 HOH HOH . 
V 4 HOH B 11 611 29 HOH HOH . 
V 4 HOH B 12 612 1 HOH HOH . 
V 4 HOH B 13 613 89 HOH HOH . 
V 4 HOH B 14 614 66 HOH HOH . 
V 4 HOH B 15 615 38 HOH HOH . 
V 4 HOH B 16 616 11 HOH HOH . 
V 4 HOH B 17 617 63 HOH HOH . 
V 4 HOH B 18 618 72 HOH HOH . 
V 4 HOH B 19 619 12 HOH HOH . 
V 4 HOH B 20 620 25 HOH HOH . 
V 4 HOH B 21 621 106 HOH HOH . 
V 4 HOH B 22 622 105 HOH HOH . 
V 4 HOH B 23 623 34 HOH HOH . 
V 4 HOH B 24 624 103 HOH HOH . 
W 4 HOH C 1 601 53 HOH HOH . 
W 4 HOH C 2 602 55 HOH HOH . 
W 4 HOH C 3 603 21 HOH HOH . 
W 4 HOH C 4 604 98 HOH HOH . 
W 4 HOH C 5 605 10 HOH HOH . 
W 4 HOH C 6 606 28 HOH HOH . 
W 4 HOH C 7 607 37 HOH HOH . 
W 4 HOH C 8 608 94 HOH HOH . 
W 4 HOH C 9 609 16 HOH HOH . 
W 4 HOH C 10 610 23 HOH HOH . 
W 4 HOH C 11 611 20 HOH HOH . 
W 4 HOH C 12 612 46 HOH HOH . 
W 4 HOH C 13 613 35 HOH HOH . 
W 4 HOH C 14 614 85 HOH HOH . 
W 4 HOH C 15 615 40 HOH HOH . 
W 4 HOH C 16 616 87 HOH HOH . 
W 4 HOH C 17 617 4 HOH HOH . 
W 4 HOH C 18 618 31 HOH HOH . 
W 4 HOH C 19 619 41 HOH HOH . 
W 4 HOH C 20 620 50 HOH HOH . 
W 4 HOH C 21 621 17 HOH HOH . 
W 4 HOH C 22 622 30 HOH HOH . 
W 4 HOH C 23 623 43 HOH HOH . 
W 4 HOH C 24 624 67 HOH HOH . 
W 4 HOH C 25 625 92 HOH HOH . 
W 4 HOH C 26 626 73 HOH HOH . 
W 4 HOH C 27 627 68 HOH HOH . 
W 4 HOH C 28 628 81 HOH HOH . 
W 4 HOH C 29 629 82 HOH HOH . 
W 4 HOH C 30 630 76 HOH HOH . 
W 4 HOH C 31 631 80 HOH HOH . 
X 4 HOH D 1 601 88 HOH HOH . 
X 4 HOH D 2 602 65 HOH HOH . 
X 4 HOH D 3 603 91 HOH HOH . 
X 4 HOH D 4 604 100 HOH HOH . 
X 4 HOH D 5 605 51 HOH HOH . 
X 4 HOH D 6 606 61 HOH HOH . 
X 4 HOH D 7 607 62 HOH HOH . 
X 4 HOH D 8 608 9 HOH HOH . 
X 4 HOH D 9 609 33 HOH HOH . 
X 4 HOH D 10 610 49 HOH HOH . 
X 4 HOH D 11 611 107 HOH HOH . 
X 4 HOH D 12 612 32 HOH HOH . 
X 4 HOH D 13 613 104 HOH HOH . 
X 4 HOH D 14 614 22 HOH HOH . 
X 4 HOH D 15 615 54 HOH HOH . 
X 4 HOH D 16 616 102 HOH HOH . 
X 4 HOH D 17 617 78 HOH HOH . 
X 4 HOH D 18 618 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 3 69.932 21.538 131.555 1 60.27 ? C1 EDO 504 A 1 
HETATM 2 O O1 EDO . . . H 3 69.013 21.817 132.59 1 59.86 ? O1 EDO 504 A 1 
HETATM 3 C C2 EDO . . . H 3 70.643 22.747 131.085 1 61.58 ? C2 EDO 504 A 1 
HETATM 4 O O2 EDO . . . H 3 72.024 22.729 131.383 1 64.93 ? O2 EDO 504 A 1 
HETATM 5 H H11 EDO . . . H 3 70.663 20.809 131.912 1 72.76 ? H11 EDO 504 A 1 
HETATM 6 H H12 EDO . . . H 3 69.399 21.087 130.715 1 72.76 ? H12 EDO 504 A 1 
HETATM 7 H HO1 EDO . . . H 3 68.576 20.999 132.862 1 72.27 ? HO1 EDO 504 A 1 
HETATM 8 H H21 EDO . . . H 3 70.189 23.618 131.557 1 74.33 ? H21 EDO 504 A 1 
HETATM 9 H H22 EDO . . . H 3 70.509 22.847 130.006 1 74.33 ? H22 EDO 504 A 1 
HETATM 10 H HO2 EDO . . . H 3 72.435 23.54 131.054 1 78.35 ? HO2 EDO 504 A 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
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