data_7PQ1 # _model_server_result.job_id fmBaHd-cvXfGZDgILuvR6Q _model_server_result.datetime_utc '2025-06-24 13:17:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pq1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7PQ1 # _exptl.entry_id 7PQ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PQ1 _cell.length_a 81.414 _cell.length_b 109.222 _cell.length_c 105.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PQ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 351 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 350 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.287 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 7PQ1 _atom_sites.fract_transf_matrix[1][1] 0.012283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 401 500 HEM HEM . C 3 GOL A 1 402 600 GOL GOL . D 4 HOH A 1 501 87 HOH HOH . D 4 HOH A 2 502 49 HOH HOH . D 4 HOH A 3 503 55 HOH HOH . D 4 HOH A 4 504 41 HOH HOH . D 4 HOH A 5 505 16 HOH HOH . D 4 HOH A 6 506 79 HOH HOH . D 4 HOH A 7 507 3 HOH HOH . D 4 HOH A 8 508 27 HOH HOH . D 4 HOH A 9 509 68 HOH HOH . D 4 HOH A 10 510 65 HOH HOH . D 4 HOH A 11 511 21 HOH HOH . D 4 HOH A 12 512 35 HOH HOH . D 4 HOH A 13 513 25 HOH HOH . D 4 HOH A 14 514 2 HOH HOH . D 4 HOH A 15 515 24 HOH HOH . D 4 HOH A 16 516 36 HOH HOH . D 4 HOH A 17 517 18 HOH HOH . D 4 HOH A 18 518 53 HOH HOH . D 4 HOH A 19 519 60 HOH HOH . D 4 HOH A 20 520 45 HOH HOH . D 4 HOH A 21 521 5 HOH HOH . D 4 HOH A 22 522 31 HOH HOH . D 4 HOH A 23 523 1 HOH HOH . D 4 HOH A 24 524 69 HOH HOH . D 4 HOH A 25 525 46 HOH HOH . D 4 HOH A 26 526 29 HOH HOH . D 4 HOH A 27 527 34 HOH HOH . D 4 HOH A 28 528 85 HOH HOH . D 4 HOH A 29 529 64 HOH HOH . D 4 HOH A 30 530 13 HOH HOH . D 4 HOH A 31 531 17 HOH HOH . D 4 HOH A 32 532 32 HOH HOH . D 4 HOH A 33 533 22 HOH HOH . D 4 HOH A 34 534 44 HOH HOH . D 4 HOH A 35 535 73 HOH HOH . D 4 HOH A 36 536 83 HOH HOH . D 4 HOH A 37 537 30 HOH HOH . D 4 HOH A 38 538 4 HOH HOH . D 4 HOH A 39 539 10 HOH HOH . D 4 HOH A 40 540 56 HOH HOH . D 4 HOH A 41 541 6 HOH HOH . D 4 HOH A 42 542 8 HOH HOH . D 4 HOH A 43 543 15 HOH HOH . D 4 HOH A 44 544 12 HOH HOH . D 4 HOH A 45 545 14 HOH HOH . D 4 HOH A 46 546 9 HOH HOH . D 4 HOH A 47 547 19 HOH HOH . D 4 HOH A 48 548 42 HOH HOH . D 4 HOH A 49 549 39 HOH HOH . D 4 HOH A 50 550 80 HOH HOH . D 4 HOH A 51 551 7 HOH HOH . D 4 HOH A 52 552 78 HOH HOH . D 4 HOH A 53 553 58 HOH HOH . D 4 HOH A 54 554 62 HOH HOH . D 4 HOH A 55 555 23 HOH HOH . D 4 HOH A 56 556 28 HOH HOH . D 4 HOH A 57 557 86 HOH HOH . D 4 HOH A 58 558 20 HOH HOH . D 4 HOH A 59 559 70 HOH HOH . D 4 HOH A 60 560 88 HOH HOH . D 4 HOH A 61 561 26 HOH HOH . D 4 HOH A 62 562 61 HOH HOH . D 4 HOH A 63 563 81 HOH HOH . D 4 HOH A 64 564 52 HOH HOH . D 4 HOH A 65 565 57 HOH HOH . D 4 HOH A 66 566 33 HOH HOH . D 4 HOH A 67 567 40 HOH HOH . D 4 HOH A 68 568 63 HOH HOH . D 4 HOH A 69 569 77 HOH HOH . D 4 HOH A 70 570 11 HOH HOH . D 4 HOH A 71 571 76 HOH HOH . D 4 HOH A 72 572 37 HOH HOH . D 4 HOH A 73 573 71 HOH HOH . D 4 HOH A 74 574 75 HOH HOH . D 4 HOH A 75 575 84 HOH HOH . D 4 HOH A 76 576 51 HOH HOH . D 4 HOH A 77 577 74 HOH HOH . D 4 HOH A 78 578 48 HOH HOH . D 4 HOH A 79 579 59 HOH HOH . D 4 HOH A 80 580 89 HOH HOH . D 4 HOH A 81 581 43 HOH HOH . D 4 HOH A 82 582 47 HOH HOH . D 4 HOH A 83 583 67 HOH HOH . D 4 HOH A 84 584 50 HOH HOH . D 4 HOH A 85 585 90 HOH HOH . D 4 HOH A 86 586 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -23.217 -19.124 -2.4 0.8 37.02 ? CHA HEM 401 A 1 HETATM 2 C CHB HEM . . . B 2 -20.644 -23.158 -3.152 1 36.83 ? CHB HEM 401 A 1 HETATM 3 C CHC HEM . . . B 2 -22.518 -23.54 -7.604 0.86 36.33 ? CHC HEM 401 A 1 HETATM 4 C CHD HEM . . . B 2 -24.33 -19.053 -7.139 1 34.52 ? CHD HEM 401 A 1 HETATM 5 C C1A HEM . . . B 2 -22.392 -20.205 -2.172 1 32.06 ? C1A HEM 401 A 1 HETATM 6 C C2A HEM . . . B 2 -21.746 -20.58 -0.925 0.32 38.91 ? C2A HEM 401 A 1 HETATM 7 C C3A HEM . . . B 2 -21.039 -21.692 -1.149 1 40.77 ? C3A HEM 401 A 1 HETATM 8 C C4A HEM . . . B 2 -21.212 -22.067 -2.535 0.71 38.71 ? C4A HEM 401 A 1 HETATM 9 C CMA HEM . . . B 2 -20.183 -22.464 -0.124 0.77 31.24 ? CMA HEM 401 A 1 HETATM 10 C CAA HEM . . . B 2 -21.841 -19.828 0.423 1 36.1 ? CAA HEM 401 A 1 HETATM 11 C CBA HEM . . . B 2 -21.057 -18.523 0.326 0.73 37.72 ? CBA HEM 401 A 1 HETATM 12 C CGA HEM . . . B 2 -21.138 -17.771 1.628 1 37.5 ? CGA HEM 401 A 1 HETATM 13 O O1A HEM . . . B 2 -20.657 -16.609 1.678 1 36.66 ? O1A HEM 401 A 1 HETATM 14 O O2A HEM . . . B 2 -21.684 -18.33 2.614 1 41.73 ? O2A HEM 401 A 1 HETATM 15 C C1B HEM . . . B 2 -20.98 -23.655 -4.392 0.64 37.12 ? C1B HEM 401 A 1 HETATM 16 C C2B HEM . . . B 2 -20.608 -24.955 -4.909 1 37 ? C2B HEM 401 A 1 HETATM 17 C C3B HEM . . . B 2 -21.117 -25.072 -6.152 1 38.67 ? C3B HEM 401 A 1 HETATM 18 C C4B HEM . . . B 2 -21.837 -23.842 -6.441 0.49 40.34 ? C4B HEM 401 A 1 HETATM 19 C CMB HEM . . . B 2 -19.756 -25.958 -4.099 1 34.51 ? CMB HEM 401 A 1 HETATM 20 C CAB HEM . . . B 2 -21.04 -26.248 -7.166 0.92 37.82 ? CAB HEM 401 A 1 HETATM 21 C CBB HEM . . . B 2 -20.577 -27.474 -6.892 1 38.54 ? CBB HEM 401 A 1 HETATM 22 C C1C HEM . . . B 2 -23.203 -22.37 -7.876 1 33.73 ? C1C HEM 401 A 1 HETATM 23 C C2C HEM . . . B 2 -23.978 -22.071 -9.067 0.64 39.67 ? C2C HEM 401 A 1 HETATM 24 C C3C HEM . . . B 2 -24.479 -20.838 -8.953 1 41.19 ? C3C HEM 401 A 1 HETATM 25 C C4C HEM . . . B 2 -24.044 -20.295 -7.674 0.71 36.09 ? C4C HEM 401 A 1 HETATM 26 C CMC HEM . . . B 2 -24.2 -23.005 -10.278 1 38.02 ? CMC HEM 401 A 1 HETATM 27 C CAC HEM . . . B 2 -25.364 -20.171 -10.035 1 35.25 ? CAC HEM 401 A 1 HETATM 28 C CBC HEM . . . B 2 -25.802 -18.912 -9.928 0.83 38.75 ? CBC HEM 401 A 1 HETATM 29 C C1D HEM . . . B 2 -24.199 -18.684 -5.816 0.62 37.84 ? C1D HEM 401 A 1 HETATM 30 C C2D HEM . . . B 2 -24.641 -17.436 -5.228 0.64 38.57 ? C2D HEM 401 A 1 HETATM 31 C C3D HEM . . . B 2 -24.334 -17.458 -3.931 1 36.23 ? C3D HEM 401 A 1 HETATM 32 C C4D HEM . . . B 2 -23.687 -18.72 -3.635 1 38.37 ? C4D HEM 401 A 1 HETATM 33 C CMD HEM . . . B 2 -25.344 -16.28 -5.971 0.71 39.94 ? CMD HEM 401 A 1 HETATM 34 C CAD HEM . . . B 2 -24.627 -16.339 -2.911 0.54 41.74 ? CAD HEM 401 A 1 HETATM 35 C CBD HEM . . . B 2 -25.802 -16.81 -2.057 1 41.17 ? CBD HEM 401 A 1 HETATM 36 C CGD HEM . . . B 2 -26.222 -15.748 -1.078 1 43.71 ? CGD HEM 401 A 1 HETATM 37 O O1D HEM . . . B 2 -25.398 -14.85 -0.765 1 47.26 ? O1D HEM 401 A 1 HETATM 38 O O2D HEM . . . B 2 -27.386 -15.81 -0.604 1 42.3 ? O2D HEM 401 A 1 HETATM 39 N NA HEM . . . B 2 -22.043 -21.14 -3.127 1 45.17 ? NA HEM 401 A 1 HETATM 40 N NB HEM . . . B 2 -21.729 -23.006 -5.35 1 35.27 ? NB HEM 401 A 1 HETATM 41 N NC HEM . . . B 2 -23.27 -21.26 -7.055 1 40.66 ? NC HEM 401 A 1 HETATM 42 N ND HEM . . . B 2 -23.622 -19.442 -4.813 1 30.19 ? ND HEM 401 A 1 HETATM 43 FE FE HEM . . . B 2 -22.729 -21.25 -5.074 1 38.07 ? FE HEM 401 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #