data_7PQ3 # _model_server_result.job_id PdGBTdzywI9VW71dQ5pTgw _model_server_result.datetime_utc '2024-11-25 08:43:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7PQ3 # _exptl.entry_id 7PQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 658.412 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PQ3 _cell.length_a 56.731 _cell.length_b 56.731 _cell.length_c 361.469 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H24 N10 O12 P2' _chem_comp.formula_weight 658.412 _chem_comp.id LQJ _chem_comp.mon_nstd_flag . _chem_comp.name "3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 C18 LQJ sing 179 n n N9 C18 LQJ doub 180 n y N9 C17 LQJ sing 181 n y C18 C15 LQJ sing 182 n y C17 N8 LQJ doub 183 n y C15 N7 LQJ sing 184 n y C15 C16 LQJ doub 185 n y N7 C14 LQJ doub 186 n y C16 N8 LQJ sing 187 n y C16 N6 LQJ sing 188 n y C14 N6 LQJ sing 189 n y N6 C13 LQJ sing 190 n n C13 C19 LQJ sing 191 n n C13 O7 LQJ sing 192 n n O3 C9 LQJ sing 193 n n C19 O8 LQJ sing 194 n n C19 C20 LQJ sing 195 n n O8 P2 LQJ sing 196 n n O7 C12 LQJ sing 197 n n C4 N2 LQJ doub 198 n y C4 N1 LQJ sing 199 n y C9 C3 LQJ sing 200 n n C9 C10 LQJ sing 201 n n N2 C5 LQJ sing 202 n y O5 P1 LQJ doub 203 n n C20 C12 LQJ sing 204 n n C20 O9 LQJ sing 205 n n O6 P1 LQJ sing 206 n n O6 C11 LQJ sing 207 n n O4 C10 LQJ sing 208 n n O4 P1 LQJ sing 209 n n C12 C11 LQJ sing 210 n n P2 O10 LQJ doub 211 n n P2 O11 LQJ sing 212 n n P2 O9 LQJ sing 213 n n N1 C3 LQJ sing 214 n n N1 C6 LQJ sing 215 n y C3 O2 LQJ sing 216 n n C5 C6 LQJ doub 217 n y C5 C8 LQJ sing 218 n y N5 C8 LQJ sing 219 n n C10 C2 LQJ sing 220 n n P1 O12 LQJ sing 221 n n C6 N3 LQJ sing 222 n y C8 N4 LQJ doub 223 n y N3 C7 LQJ doub 224 n y N4 C7 LQJ sing 225 n y O2 C2 LQJ sing 226 n n C2 C1 LQJ sing 227 n n O1 C1 LQJ sing 228 n n C2 H1 LQJ sing 229 n n C4 H2 LQJ sing 230 n n N5 H3 LQJ sing 231 n n N5 H4 LQJ sing 232 n n C7 H5 LQJ sing 233 n n C3 H6 LQJ sing 234 n n C9 H7 LQJ sing 235 n n O3 H8 LQJ sing 236 n n C1 H9 LQJ sing 237 n n C1 H10 LQJ sing 238 n n O1 H11 LQJ sing 239 n n C10 H12 LQJ sing 240 n n O12 H13 LQJ sing 241 n n C11 H14 LQJ sing 242 n n C11 H15 LQJ sing 243 n n C12 H16 LQJ sing 244 n n C20 H17 LQJ sing 245 n n O11 H18 LQJ sing 246 n n C19 H19 LQJ sing 247 n n C13 H20 LQJ sing 248 n n C14 H21 LQJ sing 249 n n C17 H22 LQJ sing 250 n n N10 H23 LQJ sing 251 n n N10 H24 LQJ sing 252 n n # _atom_sites.entry_id 7PQ3 _atom_sites.fract_transf_matrix[1][1] 0.017627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LQJ AAA 1 301 502 LQJ LQJ . D 2 LQJ BBB 1 301 502 LQJ LQJ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 LQJ . . . C 2 48.342 21.732 151.155 1 81.18 0 P1 LQJ 301 AAA 1 HETATM 2 P P2 LQJ . . . C 2 53.311 17.643 151.129 1 88.58 0 P2 LQJ 301 AAA 1 HETATM 3 N N9 LQJ . . . C 2 49.118 13.971 155.852 1 76.76 0 N9 LQJ 301 AAA 1 HETATM 4 C C8 LQJ . . . C 2 42.747 23.232 144.044 1 46.99 0 C8 LQJ 301 AAA 1 HETATM 5 N N7 LQJ . . . C 2 47.43 14.49 152.597 1 85.61 0 N7 LQJ 301 AAA 1 HETATM 6 C C5 LQJ . . . C 2 42.775 23.215 145.443 1 39.46 0 C5 LQJ 301 AAA 1 HETATM 7 C C6 LQJ . . . C 2 43.996 23.008 146.051 1 49.25 0 C6 LQJ 301 AAA 1 HETATM 8 N N6 LQJ . . . C 2 49.238 15.775 152.264 1 83.93 0 N6 LQJ 301 AAA 1 HETATM 9 N N1 LQJ . . . C 2 43.763 23.011 147.409 1 54.46 0 N1 LQJ 301 AAA 1 HETATM 10 C C2 LQJ . . . C 2 46.761 23.927 149.034 1 82.26 0 C2 LQJ 301 AAA 1 HETATM 11 N N3 LQJ . . . C 2 45.163 22.788 145.425 1 51.51 0 N3 LQJ 301 AAA 1 HETATM 12 C C4 LQJ . . . C 2 42.411 23.261 147.564 1 50.56 0 C4 LQJ 301 AAA 1 HETATM 13 N N5 LQJ . . . C 2 41.634 23.405 143.344 1 60.67 0 N5 LQJ 301 AAA 1 HETATM 14 N N4 LQJ . . . C 2 43.911 23.045 143.373 1 50.02 0 N4 LQJ 301 AAA 1 HETATM 15 C C7 LQJ . . . C 2 45.018 22.839 144.099 1 54.02 0 C7 LQJ 301 AAA 1 HETATM 16 N N2 LQJ . . . C 2 41.785 23.365 146.406 1 47.1 0 N2 LQJ 301 AAA 1 HETATM 17 C C3 LQJ . . . C 2 44.745 22.89 148.47 1 63.93 0 C3 LQJ 301 AAA 1 HETATM 18 C C9 LQJ . . . C 2 45.831 21.814 148.386 1 74.33 0 C9 LQJ 301 AAA 1 HETATM 19 O O3 LQJ . . . C 2 45.466 20.564 148.922 1 88.28 0 O3 LQJ 301 AAA 1 HETATM 20 O O2 LQJ . . . C 2 45.444 24.105 148.452 1 69.81 0 O2 LQJ 301 AAA 1 HETATM 21 C C1 LQJ . . . C 2 47.767 24.582 148.125 1 85.14 0 C1 LQJ 301 AAA 1 HETATM 22 O O1 LQJ . . . C 2 48.768 23.661 147.742 1 93.18 0 O1 LQJ 301 AAA 1 HETATM 23 C C10 LQJ . . . C 2 46.951 22.421 149.24 1 71.25 0 C10 LQJ 301 AAA 1 HETATM 24 O O4 LQJ . . . C 2 46.862 22.093 150.628 1 60.94 0 O4 LQJ 301 AAA 1 HETATM 25 O O5 LQJ . . . C 2 48.445 21.894 152.647 1 59.69 0 O5 LQJ 301 AAA 1 HETATM 26 O O12 LQJ . . . C 2 49.452 22.41 150.396 1 70.39 0 O12 LQJ 301 AAA 1 HETATM 27 O O6 LQJ . . . C 2 48.402 20.168 150.79 1 92.01 0 O6 LQJ 301 AAA 1 HETATM 28 C C11 LQJ . . . C 2 49.334 19.745 149.761 1 95.27 0 C11 LQJ 301 AAA 1 HETATM 29 C C12 LQJ . . . C 2 50.149 18.591 150.256 1 89.95 0 C12 LQJ 301 AAA 1 HETATM 30 O O7 LQJ . . . C 2 49.297 17.617 150.868 1 99.92 0 O7 LQJ 301 AAA 1 HETATM 31 C C20 LQJ . . . C 2 51.131 18.917 151.37 1 88.77 0 C20 LQJ 301 AAA 1 HETATM 32 O O9 LQJ . . . C 2 52.459 18.947 150.826 1 90.24 0 O9 LQJ 301 AAA 1 HETATM 33 O O10 LQJ . . . C 2 54.75 17.772 151.501 1 60.19 0 O10 LQJ 301 AAA 1 HETATM 34 O O11 LQJ . . . C 2 53.39 16.735 149.964 1 107.37 0 O11 LQJ 301 AAA 1 HETATM 35 O O8 LQJ . . . C 2 52.38 17.163 152.35 1 107.46 0 O8 LQJ 301 AAA 1 HETATM 36 C C19 LQJ . . . C 2 51.053 17.698 152.286 1 91.83 0 C19 LQJ 301 AAA 1 HETATM 37 C C13 LQJ . . . C 2 50.134 16.719 151.55 1 92.49 0 C13 LQJ 301 AAA 1 HETATM 38 C C14 LQJ . . . C 2 48.056 15.28 151.757 1 84.53 0 C14 LQJ 301 AAA 1 HETATM 39 C C15 LQJ . . . C 2 48.245 14.468 153.718 1 73.27 0 C15 LQJ 301 AAA 1 HETATM 40 C C16 LQJ . . . C 2 49.368 15.242 153.52 1 70.51 0 C16 LQJ 301 AAA 1 HETATM 41 N N8 LQJ . . . C 2 50.365 15.432 154.393 1 72.15 0 N8 LQJ 301 AAA 1 HETATM 42 C C17 LQJ . . . C 2 50.14 14.77 155.527 1 68.67 0 C17 LQJ 301 AAA 1 HETATM 43 C C18 LQJ . . . C 2 48.13 13.789 154.938 1 83.14 0 C18 LQJ 301 AAA 1 HETATM 44 N N10 LQJ . . . C 2 47.104 12.991 155.223 1 93.09 0 N10 LQJ 301 AAA 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #