data_7PQ3
#
_model_server_result.job_id            fMwEqktEMi5YUtaNOlJu7A 
_model_server_result.datetime_utc      '2024-10-19 11:39:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pq3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    7PQ3 
#
_exptl.entry_id    7PQ3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              658.412 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PQ3 
_cell.length_a            56.731 
_cell.length_b            56.731 
_cell.length_c            361.469 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PQ3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C20 H24 N10 O12 P2' 
_chem_comp.formula_weight    658.412 
_chem_comp.id                LQJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3'-O-[(R)-{[(2S,3aS,4S,6S,6aS)-6-(6-amino-9H-purin-9-yl)-2-hydroxy-2-oxotetrahydro-2H-2lambda~5~-furo[3,4-d][1,3,2]dioxaphosphol-4-yl]methoxy}(hydroxy)phosphoryl]adenosine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N10 C18 LQJ sing 179 n n 
N9 C18 LQJ doub 180 n y 
N9 C17 LQJ sing 181 n y 
C18 C15 LQJ sing 182 n y 
C17 N8 LQJ doub 183 n y 
C15 N7 LQJ sing 184 n y 
C15 C16 LQJ doub 185 n y 
N7 C14 LQJ doub 186 n y 
C16 N8 LQJ sing 187 n y 
C16 N6 LQJ sing 188 n y 
C14 N6 LQJ sing 189 n y 
N6 C13 LQJ sing 190 n n 
C13 C19 LQJ sing 191 n n 
C13 O7 LQJ sing 192 n n 
O3 C9 LQJ sing 193 n n 
C19 O8 LQJ sing 194 n n 
C19 C20 LQJ sing 195 n n 
O8 P2 LQJ sing 196 n n 
O7 C12 LQJ sing 197 n n 
C4 N2 LQJ doub 198 n y 
C4 N1 LQJ sing 199 n y 
C9 C3 LQJ sing 200 n n 
C9 C10 LQJ sing 201 n n 
N2 C5 LQJ sing 202 n y 
O5 P1 LQJ doub 203 n n 
C20 C12 LQJ sing 204 n n 
C20 O9 LQJ sing 205 n n 
O6 P1 LQJ sing 206 n n 
O6 C11 LQJ sing 207 n n 
O4 C10 LQJ sing 208 n n 
O4 P1 LQJ sing 209 n n 
C12 C11 LQJ sing 210 n n 
P2 O10 LQJ doub 211 n n 
P2 O11 LQJ sing 212 n n 
P2 O9 LQJ sing 213 n n 
N1 C3 LQJ sing 214 n n 
N1 C6 LQJ sing 215 n y 
C3 O2 LQJ sing 216 n n 
C5 C6 LQJ doub 217 n y 
C5 C8 LQJ sing 218 n y 
N5 C8 LQJ sing 219 n n 
C10 C2 LQJ sing 220 n n 
P1 O12 LQJ sing 221 n n 
C6 N3 LQJ sing 222 n y 
C8 N4 LQJ doub 223 n y 
N3 C7 LQJ doub 224 n y 
N4 C7 LQJ sing 225 n y 
O2 C2 LQJ sing 226 n n 
C2 C1 LQJ sing 227 n n 
O1 C1 LQJ sing 228 n n 
C2 H1 LQJ sing 229 n n 
C4 H2 LQJ sing 230 n n 
N5 H3 LQJ sing 231 n n 
N5 H4 LQJ sing 232 n n 
C7 H5 LQJ sing 233 n n 
C3 H6 LQJ sing 234 n n 
C9 H7 LQJ sing 235 n n 
O3 H8 LQJ sing 236 n n 
C1 H9 LQJ sing 237 n n 
C1 H10 LQJ sing 238 n n 
O1 H11 LQJ sing 239 n n 
C10 H12 LQJ sing 240 n n 
O12 H13 LQJ sing 241 n n 
C11 H14 LQJ sing 242 n n 
C11 H15 LQJ sing 243 n n 
C12 H16 LQJ sing 244 n n 
C20 H17 LQJ sing 245 n n 
O11 H18 LQJ sing 246 n n 
C19 H19 LQJ sing 247 n n 
C13 H20 LQJ sing 248 n n 
C14 H21 LQJ sing 249 n n 
C17 H22 LQJ sing 250 n n 
N10 H23 LQJ sing 251 n n 
N10 H24 LQJ sing 252 n n 
#
_atom_sites.entry_id                     7PQ3 
_atom_sites.fract_transf_matrix[1][1]    0.017627 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017627 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002766 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LQJ AAA 1 301 502 LQJ LQJ . 
D 2 LQJ BBB 1 301 502 LQJ LQJ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 LQJ . . . D 2 54.855 24.508 149.345 1 74.21 0 P1 LQJ 301 BBB 1 
HETATM 2 P P2 LQJ . . . D 2 49.309 26.243 145.765 1 90.36 0 P2 LQJ 301 BBB 1 
HETATM 3 N N9 LQJ . . . D 2 54.003 32.165 144.56 1 94.8 0 N9 LQJ 301 BBB 1 
HETATM 4 C C8 LQJ . . . D 2 60.471 17.624 147.319 1 93.67 0 C8 LQJ 301 BBB 1 
HETATM 5 N N7 LQJ . . . D 2 55.527 29.013 143.337 1 103.95 0 N7 LQJ 301 BBB 1 
HETATM 6 C C5 LQJ . . . D 2 60.338 18.868 147.961 1 97.08 0 C5 LQJ 301 BBB 1 
HETATM 7 C C6 LQJ . . . D 2 59.079 19.436 148.005 1 95.57 0 C6 LQJ 301 BBB 1 
HETATM 8 N N6 LQJ . . . D 2 53.796 28.148 144.457 1 98.3 0 N6 LQJ 301 BBB 1 
HETATM 9 N N1 LQJ . . . D 2 59.231 20.624 148.67 1 86 0 N1 LQJ 301 BBB 1 
HETATM 10 C C2 LQJ . . . D 2 56.026 21.316 149.876 1 88.33 0 C2 LQJ 301 BBB 1 
HETATM 11 N N3 LQJ . . . D 2 57.945 18.922 147.5 1 89.51 0 N3 LQJ 301 BBB 1 
HETATM 12 C C4 LQJ . . . D 2 60.552 20.711 149.013 1 93.26 0 C4 LQJ 301 BBB 1 
HETATM 13 N N5 LQJ . . . D 2 61.621 16.965 147.219 1 89.28 0 N5 LQJ 301 BBB 1 
HETATM 14 N N4 LQJ . . . D 2 59.35 17.088 146.782 1 102.47 0 N4 LQJ 301 BBB 1 
HETATM 15 C C7 LQJ . . . D 2 58.191 17.756 146.906 1 104.59 0 C7 LQJ 301 BBB 1 
HETATM 16 N N2 LQJ . . . D 2 61.258 19.685 148.599 1 96.75 0 N2 LQJ 301 BBB 1 
HETATM 17 C C3 LQJ . . . D 2 58.196 21.587 149.022 1 79.68 0 C3 LQJ 301 BBB 1 
HETATM 18 C C9 LQJ . . . D 2 57.206 21.957 147.924 1 84.39 0 C9 LQJ 301 BBB 1 
HETATM 19 O O3 LQJ . . . D 2 57.677 23.044 147.156 1 97.02 0 O3 LQJ 301 BBB 1 
HETATM 20 O O2 LQJ . . . D 2 57.438 21.042 150.08 1 78.72 0 O2 LQJ 301 BBB 1 
HETATM 21 C C1 LQJ . . . D 2 55.289 20.035 149.559 1 108.53 0 C1 LQJ 301 BBB 1 
HETATM 22 O O1 LQJ . . . D 2 55.974 18.875 150.018 1 128.85 0 O1 LQJ 301 BBB 1 
HETATM 23 C C10 LQJ . . . D 2 55.988 22.345 148.758 1 81.42 0 C10 LQJ 301 BBB 1 
HETATM 24 O O4 LQJ . . . D 2 56.199 23.642 149.272 1 72.63 0 O4 LQJ 301 BBB 1 
HETATM 25 O O5 LQJ . . . D 2 55.147 25.818 150.025 1 88.75 0 O5 LQJ 301 BBB 1 
HETATM 26 O O12 LQJ . . . D 2 53.725 23.728 149.963 1 85.41 0 O12 LQJ 301 BBB 1 
HETATM 27 O O6 LQJ . . . D 2 54.501 24.759 147.798 1 62.55 0 O6 LQJ 301 BBB 1 
HETATM 28 C C11 LQJ . . . D 2 53.063 24.702 147.641 1 71.15 0 C11 LQJ 301 BBB 1 
HETATM 29 C C12 LQJ . . . D 2 52.554 25.505 146.486 1 73.11 0 C12 LQJ 301 BBB 1 
HETATM 30 O O7 LQJ . . . D 2 53.575 26.324 145.901 1 74.73 0 O7 LQJ 301 BBB 1 
HETATM 31 C C20 LQJ . . . D 2 51.541 26.574 146.858 1 79.46 0 C20 LQJ 301 BBB 1 
HETATM 32 O O9 LQJ . . . D 2 50.213 26.075 147.047 1 72.4 0 O9 LQJ 301 BBB 1 
HETATM 33 O O10 LQJ . . . D 2 48.072 27.048 145.936 1 74.95 0 O10 LQJ 301 BBB 1 
HETATM 34 O O11 LQJ . . . D 2 48.772 24.952 145.283 1 112.68 0 O11 LQJ 301 BBB 1 
HETATM 35 O O8 LQJ . . . D 2 50.448 26.879 144.817 1 85.66 0 O8 LQJ 301 BBB 1 
HETATM 36 C C19 LQJ . . . D 2 51.534 27.407 145.585 1 84.54 0 C19 LQJ 301 BBB 1 
HETATM 37 C C13 LQJ . . . D 2 52.893 27.085 144.93 1 86.9 0 C13 LQJ 301 BBB 1 
HETATM 38 C C14 LQJ . . . D 2 54.9 27.914 143.683 1 108.27 0 C14 LQJ 301 BBB 1 
HETATM 39 C C15 LQJ . . . D 2 54.777 30.027 143.914 1 102.07 0 C15 LQJ 301 BBB 1 
HETATM 40 C C16 LQJ . . . D 2 53.696 29.51 144.598 1 101.76 0 C16 LQJ 301 BBB 1 
HETATM 41 N N8 LQJ . . . D 2 52.771 30.213 145.278 1 103.46 0 N8 LQJ 301 BBB 1 
HETATM 42 C C17 LQJ . . . D 2 53.012 31.522 145.196 1 98.45 0 C17 LQJ 301 BBB 1 
HETATM 43 C C18 LQJ . . . D 2 54.929 31.424 143.899 1 100.85 0 C18 LQJ 301 BBB 1 
HETATM 44 N N10 LQJ . . . D 2 55.93 32.029 143.265 1 101.59 0 N10 LQJ 301 BBB 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#