data_7PR0
#
_model_server_result.job_id            F3XjObt1T-6BJOvrqRIhpQ 
_model_server_result.datetime_utc      '2024-10-12 05:27:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pr0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":601}' 
#
_entry.id    7PR0 
#
_exptl.entry_id    7PR0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.68 
_cell.angle_gamma         90 
_cell.entry_id            7PR0 
_cell.length_a            231.308 
_cell.length_b            146.064 
_cell.length_c            78.578 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PR0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O,P,Q 1 1 
D,E,F,R,S,T 2 1 
G,H,I,U,V,W 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 R N N 
? 4 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 13 E CYS 336 1_555 A SG CYS 38 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 56 E CYS 379 1_555 A SG CYS 109 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 68 E CYS 391 1_555 A SG CYS 202 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 A SG CYS 157 E CYS 480 1_555 A SG CYS 165 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 B SG CYS 23 L CYS 23 1_555 B SG CYS 93 L CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf6 B SG CYS 141 L CYS 141 1_555 B SG CYS 201 L CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 C SG CYS 156 H CYS 156 1_555 C SG CYS 212 H CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf9 D SG CYS 13 A CYS 336 1_555 D SG CYS 38 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf10 D SG CYS 56 A CYS 379 1_555 D SG CYS 109 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf11 D SG CYS 68 A CYS 391 1_555 D SG CYS 202 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf12 D SG CYS 157 A CYS 480 1_555 D SG CYS 165 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 E SG CYS 23 B CYS 23 1_555 E SG CYS 93 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf14 E SG CYS 141 B CYS 141 1_555 E SG CYS 201 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf15 F SG CYS 22 C CYS 22 1_555 F SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf16 F SG CYS 156 C CYS 156 1_555 F SG CYS 212 C CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf17 G SG CYS 13 D CYS 336 1_555 G SG CYS 38 D CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf18 G SG CYS 56 D CYS 379 1_555 G SG CYS 109 D CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf19 G SG CYS 68 D CYS 391 1_555 G SG CYS 202 D CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf20 G SG CYS 157 D CYS 480 1_555 G SG CYS 165 D CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf21 H SG CYS 23 F CYS 23 1_555 H SG CYS 93 F CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf22 H SG CYS 141 F CYS 141 1_555 H SG CYS 201 F CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf23 I SG CYS 22 G CYS 22 1_555 I SG CYS 96 G CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf24 I SG CYS 156 G CYS 156 1_555 I SG CYS 212 G CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A ND2 ASN 20 E ASN 343 1_555 J C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 D ND2 ASN 20 A ASN 343 1_555 R C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale3 G ND2 ASN 20 D ASN 343 1_555 U C1 NAG . D NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 248 n n 
C1 O1 NAG sing 249 n n 
C1 O5 NAG sing 250 n n 
C1 H1 NAG sing 251 n n 
C2 C3 NAG sing 252 n n 
C2 N2 NAG sing 253 n n 
C2 H2 NAG sing 254 n n 
C3 C4 NAG sing 255 n n 
C3 O3 NAG sing 256 n n 
C3 H3 NAG sing 257 n n 
C4 C5 NAG sing 258 n n 
C4 O4 NAG sing 259 n n 
C4 H4 NAG sing 260 n n 
C5 C6 NAG sing 261 n n 
C5 O5 NAG sing 262 n n 
C5 H5 NAG sing 263 n n 
C6 O6 NAG sing 264 n n 
C6 H61 NAG sing 265 n n 
C6 H62 NAG sing 266 n n 
C7 C8 NAG sing 267 n n 
C7 N2 NAG sing 268 n n 
C7 O7 NAG doub 269 n n 
C8 H81 NAG sing 270 n n 
C8 H82 NAG sing 271 n n 
C8 H83 NAG sing 272 n n 
N2 HN2 NAG sing 273 n n 
O1 HO1 NAG sing 274 n n 
O3 HO3 NAG sing 275 n n 
O4 HO4 NAG sing 276 n n 
O6 HO6 NAG sing 277 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7PR0 
_atom_sites.fract_transf_matrix[1][1]    0.004323 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001052 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006846 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013098 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 4 NAG E 1 601 601 NAG NAG . 
K 5 SO4 E 1 602 3 SO4 SO4 . 
L 6 NO3 L 1 301 301 NO3 NO3 . 
M 5 SO4 L 1 302 2 SO4 SO4 . 
N 7 CL L 1 303 3 CL CL . 
O 6 NO3 H 1 401 401 NO3 NO3 . 
P 5 SO4 H 1 402 4 SO4 SO4 . 
Q 7 CL H 1 403 1 CL CL . 
R 4 NAG A 1 601 601 NAG NAG . 
S 8 GOL B 1 301 301 GOL GOL . 
T 6 NO3 C 1 301 301 NO3 NO3 . 
U 4 NAG D 1 601 601 NAG NAG . 
V 8 GOL F 1 301 301 GOL GOL . 
W 7 CL G 1 301 2 CL CL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . U 4 -96.099 36.644 -10.258 1 161.14 ? C1 NAG 601 D 1 
HETATM 2 C C2 NAG . . . U 4 -95.686 36.632 -11.738 1 167.29 ? C2 NAG 601 D 1 
HETATM 3 C C3 NAG . . . U 4 -96.808 36.057 -12.601 1 179.72 ? C3 NAG 601 D 1 
HETATM 4 C C4 NAG . . . U 4 -97.243 34.695 -12.078 1 179.86 ? C4 NAG 601 D 1 
HETATM 5 C C5 NAG . . . U 4 -97.617 34.795 -10.603 1 171.99 ? C5 NAG 601 D 1 
HETATM 6 C C6 NAG . . . U 4 -97.944 33.455 -9.987 1 172.02 ? C6 NAG 601 D 1 
HETATM 7 C C7 NAG . . . U 4 -94.415 38.205 -13.138 1 147.73 ? C7 NAG 601 D 1 
HETATM 8 C C8 NAG . . . U 4 -94.181 39.647 -13.477 1 126.14 ? C8 NAG 601 D 1 
HETATM 9 N N2 NAG . . . U 4 -95.329 37.968 -12.19 1 161.18 ? N2 NAG 601 D 1 
HETATM 10 O O3 NAG . . . U 4 -96.359 35.937 -13.946 1 190.21 ? O3 NAG 601 D 1 
HETATM 11 O O4 NAG . . . U 4 -98.363 34.221 -12.817 1 180.67 ? O4 NAG 601 D 1 
HETATM 12 O O5 NAG . . . U 4 -96.513 35.328 -9.859 1 165.33 ? O5 NAG 601 D 1 
HETATM 13 O O6 NAG . . . U 4 -96.768 32.692 -9.753 1 165.9 ? O6 NAG 601 D 1 
HETATM 14 O O7 NAG . . . U 4 -93.805 37.298 -13.696 1 144.91 ? O7 NAG 601 D 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#