data_7PRL
#
_model_server_result.job_id            wlkxvMIrrlpCUV2yMhi5Kw 
_model_server_result.datetime_utc      '2024-10-25 20:22:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7prl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7PRL 
#
_exptl.entry_id    7PRL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PRL 
_cell.length_a            95.9 
_cell.length_b            141.21 
_cell.length_c            68.52 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PRL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 37 A CYS 37 1_555 A SG CYS 169 A CYS 169 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 37 A CYS 37 1_555 A SG CYS 169 A CYS 169 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf3 A SG CYS 59 A CYS 59 1_555 A SG CYS 206 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
disulf ? disulf4 A SG CYS 67 A CYS 67 1_555 A SG CYS 166 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 A SG CYS 218 A CYS 218 1_555 A SG CYS 255 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 A SG CYS 225 A CYS 225 1_555 A SG CYS 250 A CYS 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf7 A SG CYS 237 A CYS 237 1_555 A SG CYS 275 A CYS 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf8 A SG CYS 257 A CYS 257 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf9 A SG CYS 265 A CYS 265 1_555 A SG CYS 291 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
disulf ? disulf10 A SG CYS 295 A CYS 295 1_555 A SG CYS 329 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf11 A SG CYS 308 A CYS 308 1_555 A SG CYS 321 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf12 A SG CYS 312 A CYS 312 1_555 A SG CYS 351 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf13 A SG CYS 331 A CYS 331 1_555 A SG CYS 345 A CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf14 A SG CYS 353 A CYS 353 1_555 A SG CYS 375 A CYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf15 A SG CYS 370 A CYS 370 1_555 A SG CYS 387 A CYS 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
disulf ? disulf16 A SG CYS 373 A CYS 373 1_555 A SG CYS 382 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 A ND2 ASN 163 A ASN 163 1_555 B C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
metalc ? metalc1 A ND1 HIS 34 A HIS 34 1_555 G CU CU . A CU 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc2 A OE2 GLU 156 A GLU 156 1_555 G CU CU . A CU 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc3 A ND1 HIS 277 A HIS 277 1_555 G CU CU . A CU 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc4 A NE2 HIS 324 A HIS 324 1_555 G CU CU . A CU 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7PRL 
_atom_sites.fract_transf_matrix[1][1]    0.010428 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007082 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014594 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 401 388 NAG NAG . 
C 3 GOL A 1 402 401 GOL GOL . 
D 3 GOL A 1 403 501 GOL GOL . 
E 3 GOL A 1 404 601 GOL GOL . 
F 3 GOL A 1 405 701 GOL GOL . 
G 4 CU A 1 406 1 CU CU . 
H 5 HOH A 1 501 74 HOH HOH . 
H 5 HOH A 2 502 82 HOH HOH . 
H 5 HOH A 3 503 1 HOH HOH . 
H 5 HOH A 4 504 53 HOH HOH . 
H 5 HOH A 5 505 41 HOH HOH . 
H 5 HOH A 6 506 3 HOH HOH . 
H 5 HOH A 7 507 5 HOH HOH . 
H 5 HOH A 8 508 79 HOH HOH . 
H 5 HOH A 9 509 49 HOH HOH . 
H 5 HOH A 10 510 58 HOH HOH . 
H 5 HOH A 11 511 7 HOH HOH . 
H 5 HOH A 12 512 18 HOH HOH . 
H 5 HOH A 13 513 50 HOH HOH . 
H 5 HOH A 14 514 68 HOH HOH . 
H 5 HOH A 15 515 69 HOH HOH . 
H 5 HOH A 16 516 60 HOH HOH . 
H 5 HOH A 17 517 24 HOH HOH . 
H 5 HOH A 18 518 80 HOH HOH . 
H 5 HOH A 19 519 42 HOH HOH . 
H 5 HOH A 20 520 26 HOH HOH . 
H 5 HOH A 21 521 52 HOH HOH . 
H 5 HOH A 22 522 78 HOH HOH . 
H 5 HOH A 23 523 59 HOH HOH . 
H 5 HOH A 24 524 71 HOH HOH . 
H 5 HOH A 25 525 4 HOH HOH . 
H 5 HOH A 26 526 43 HOH HOH . 
H 5 HOH A 27 527 56 HOH HOH . 
H 5 HOH A 28 528 62 HOH HOH . 
H 5 HOH A 29 529 12 HOH HOH . 
H 5 HOH A 30 530 57 HOH HOH . 
H 5 HOH A 31 531 25 HOH HOH . 
H 5 HOH A 32 532 38 HOH HOH . 
H 5 HOH A 33 533 9 HOH HOH . 
H 5 HOH A 34 534 51 HOH HOH . 
H 5 HOH A 35 535 63 HOH HOH . 
H 5 HOH A 36 536 47 HOH HOH . 
H 5 HOH A 37 537 11 HOH HOH . 
H 5 HOH A 38 538 44 HOH HOH . 
H 5 HOH A 39 539 45 HOH HOH . 
H 5 HOH A 40 540 34 HOH HOH . 
H 5 HOH A 41 541 70 HOH HOH . 
H 5 HOH A 42 542 66 HOH HOH . 
H 5 HOH A 43 543 40 HOH HOH . 
H 5 HOH A 44 544 72 HOH HOH . 
H 5 HOH A 45 545 55 HOH HOH . 
H 5 HOH A 46 546 13 HOH HOH . 
H 5 HOH A 47 547 28 HOH HOH . 
H 5 HOH A 48 548 30 HOH HOH . 
H 5 HOH A 49 549 46 HOH HOH . 
H 5 HOH A 50 550 16 HOH HOH . 
H 5 HOH A 51 551 81 HOH HOH . 
H 5 HOH A 52 552 76 HOH HOH . 
H 5 HOH A 53 553 48 HOH HOH . 
H 5 HOH A 54 554 20 HOH HOH . 
H 5 HOH A 55 555 29 HOH HOH . 
H 5 HOH A 56 556 2 HOH HOH . 
H 5 HOH A 57 557 33 HOH HOH . 
H 5 HOH A 58 558 19 HOH HOH . 
H 5 HOH A 59 559 75 HOH HOH . 
H 5 HOH A 60 560 14 HOH HOH . 
H 5 HOH A 61 561 15 HOH HOH . 
H 5 HOH A 62 562 17 HOH HOH . 
H 5 HOH A 63 563 73 HOH HOH . 
H 5 HOH A 64 564 6 HOH HOH . 
H 5 HOH A 65 565 27 HOH HOH . 
H 5 HOH A 66 566 35 HOH HOH . 
H 5 HOH A 67 567 54 HOH HOH . 
H 5 HOH A 68 568 61 HOH HOH . 
H 5 HOH A 69 569 64 HOH HOH . 
H 5 HOH A 70 570 77 HOH HOH . 
H 5 HOH A 71 571 37 HOH HOH . 
H 5 HOH A 72 572 39 HOH HOH . 
H 5 HOH A 73 573 36 HOH HOH . 
H 5 HOH A 74 574 21 HOH HOH . 
H 5 HOH A 75 575 32 HOH HOH . 
H 5 HOH A 76 576 22 HOH HOH . 
H 5 HOH A 77 577 65 HOH HOH . 
H 5 HOH A 78 578 31 HOH HOH . 
H 5 HOH A 79 579 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 44.25 12.289 -6.112 1 76.44 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . D 3 45.119 11.175 -6.084 1 74.27 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . D 3 42.784 11.779 -5.864 1 71.65 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . D 3 42.554 11.369 -4.545 1 81.7 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . D 3 41.823 12.93 -6.346 1 69.29 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . D 3 41.866 14.005 -5.434 1 64.1 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#