data_7PS6
#
_model_server_result.job_id            vFczLej8Zt5PDadgXedm2A 
_model_server_result.datetime_utc      '2024-11-21 09:06:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ps6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":501}' 
#
_entry.id    7PS6 
#
_exptl.entry_id    7PS6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PS6 
_cell.length_a            129.377 
_cell.length_b            112.567 
_cell.length_c            99.854 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PS6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 I N N 
? 9 J N N 
#
_pdbx_entity_branch.entity_id    6 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   6 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   FUC 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O6 
_pdbx_entity_branch_link.leaving_atom_id_2           HO6 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
6 n F NAG 1 A 1 NAG E 601 NAG 
6 n F FUC 2 A 2 FUC E 600 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 97 H CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 153 H CYS 153 1_555 A SG CYS 209 H CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 229 H CYS 229 1_555 B SG CYS 214 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf5 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 C SG CYS 18 E CYS 336 1_555 C SG CYS 43 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 C SG CYS 61 E CYS 379 1_555 C SG CYS 114 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 C SG CYS 162 E CYS 480 1_555 C SG CYS 170 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 D SG CYS 22 C CYS 22 1_555 D SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf10 D SG CYS 146 C CYS 146 1_555 D SG CYS 202 C CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf11 E SG CYS 22 D CYS 22 1_555 E SG CYS 90 D CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf12 E SG CYS 138 D CYS 138 1_555 E SG CYS 197 D CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 C ND2 ASN 25 E ASN 343 1_555 F C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 F O6 NAG . A NAG 1 1_555 F C1 FUC . A FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 303 n n 
C1 C2 PEG sing 304 n n 
C1 H11 PEG sing 305 n n 
C1 H12 PEG sing 306 n n 
O1 HO1 PEG sing 307 n n 
C2 O2 PEG sing 308 n n 
C2 H21 PEG sing 309 n n 
C2 H22 PEG sing 310 n n 
O2 C3 PEG sing 311 n n 
C3 C4 PEG sing 312 n n 
C3 H31 PEG sing 313 n n 
C3 H32 PEG sing 314 n n 
C4 O4 PEG sing 315 n n 
C4 H41 PEG sing 316 n n 
C4 H42 PEG sing 317 n n 
O4 HO4 PEG sing 318 n n 
#
_atom_sites.entry_id                     7PS6 
_atom_sites.fract_transf_matrix[1][1]    0.007729 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008884 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 PG0 H 1 301 301 PG0 PG0 . 
H 8 GOL E 1 701 701 GOL GOL . 
I 9 PEG C 1 501 501 PEG PEG . 
J 9 PEG C 1 502 601 PEG PEG . 
K 10 CL C 1 503 1 CL CL . 
L 8 GOL D 1 301 301 GOL GOL . 
M 11 HOH H 1 401 52 HOH HOH . 
M 11 HOH H 2 402 3 HOH HOH . 
M 11 HOH H 3 403 18 HOH HOH . 
M 11 HOH H 4 404 31 HOH HOH . 
M 11 HOH H 5 405 2 HOH HOH . 
M 11 HOH H 6 406 20 HOH HOH . 
M 11 HOH H 7 407 6 HOH HOH . 
M 11 HOH H 8 408 17 HOH HOH . 
M 11 HOH H 9 409 49 HOH HOH . 
M 11 HOH H 10 410 26 HOH HOH . 
M 11 HOH H 11 411 53 HOH HOH . 
M 11 HOH H 12 412 51 HOH HOH . 
M 11 HOH H 13 413 30 HOH HOH . 
N 11 HOH L 1 301 42 HOH HOH . 
N 11 HOH L 2 302 44 HOH HOH . 
N 11 HOH L 3 303 7 HOH HOH . 
N 11 HOH L 4 304 15 HOH HOH . 
N 11 HOH L 5 305 11 HOH HOH . 
N 11 HOH L 6 306 16 HOH HOH . 
N 11 HOH L 7 307 14 HOH HOH . 
N 11 HOH L 8 308 45 HOH HOH . 
N 11 HOH L 9 309 40 HOH HOH . 
O 11 HOH E 1 801 5 HOH HOH . 
O 11 HOH E 2 802 36 HOH HOH . 
O 11 HOH E 3 803 39 HOH HOH . 
O 11 HOH E 4 804 43 HOH HOH . 
O 11 HOH E 5 805 38 HOH HOH . 
O 11 HOH E 6 806 47 HOH HOH . 
O 11 HOH E 7 807 50 HOH HOH . 
O 11 HOH E 8 808 8 HOH HOH . 
O 11 HOH E 9 809 10 HOH HOH . 
O 11 HOH E 10 810 4 HOH HOH . 
O 11 HOH E 11 811 32 HOH HOH . 
P 11 HOH C 1 601 35 HOH HOH . 
P 11 HOH C 2 602 19 HOH HOH . 
P 11 HOH C 3 603 41 HOH HOH . 
P 11 HOH C 4 604 23 HOH HOH . 
P 11 HOH C 5 605 48 HOH HOH . 
P 11 HOH C 6 606 12 HOH HOH . 
P 11 HOH C 7 607 22 HOH HOH . 
P 11 HOH C 8 608 28 HOH HOH . 
P 11 HOH C 9 609 9 HOH HOH . 
P 11 HOH C 10 610 34 HOH HOH . 
Q 11 HOH D 1 401 1 HOH HOH . 
Q 11 HOH D 2 402 29 HOH HOH . 
Q 11 HOH D 3 403 33 HOH HOH . 
Q 11 HOH D 4 404 13 HOH HOH . 
Q 11 HOH D 5 405 27 HOH HOH . 
Q 11 HOH D 6 406 46 HOH HOH . 
Q 11 HOH D 7 407 24 HOH HOH . 
Q 11 HOH D 8 408 21 HOH HOH . 
Q 11 HOH D 9 409 25 HOH HOH . 
Q 11 HOH D 10 410 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . I 9 -76.686 28.446 -130.626 1 91.28 ? C1 PEG 501 C 1 
HETATM 2 O O1 PEG . . . I 9 -77.618 29.144 -131.425 1 83.24 ? O1 PEG 501 C 1 
HETATM 3 C C2 PEG . . . I 9 -77.274 27.176 -130.116 1 91.73 ? C2 PEG 501 C 1 
HETATM 4 O O2 PEG . . . I 9 -78.519 27.459 -129.5 1 88.25 ? O2 PEG 501 C 1 
HETATM 5 C C3 PEG . . . I 9 -78.672 26.812 -128.247 1 89.36 ? C3 PEG 501 C 1 
HETATM 6 C C4 PEG . . . I 9 -77.631 27.316 -127.296 1 82.42 ? C4 PEG 501 C 1 
HETATM 7 O O4 PEG . . . I 9 -77.783 26.736 -126.012 1 84.4 ? O4 PEG 501 C 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           7 
#