data_7PSE # _model_server_result.job_id 4gAOvj0MtczqxAaDG9RPOA _model_server_result.datetime_utc '2024-10-12 00:12:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pse # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7PSE # _exptl.entry_id 7PSE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-5,5-dimethyl-2-[(1R)-1-{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}-2-oxoethyl]-1,3-thiazolidine-4-carb oxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PSE _cell.length_a 44.83 _cell.length_b 105.48 _cell.length_c 124.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PSE _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 65 AAA SER 70 1_555 C C 1S6 . AAA 1S6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C PHE 67 AAA PHE 72 1_555 A N ALY 68 AAA ALY 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 A C ALY 68 AAA ALY 73 1_555 A N ILE 69 AAA ILE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 B OG SER 65 BBB SER 70 1_555 G C 1S6 . BBB 1S6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 B C PHE 67 BBB PHE 72 1_555 B N ALY 68 BBB ALY 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale6 B C ALY 68 BBB ALY 73 1_555 B N ILE 69 BBB ILE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'C19 H21 N3 O5 S' _chem_comp.formula_weight 403.452 _chem_comp.id 1S6 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-5,5-dimethyl-2-[(1R)-1-{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}-2-oxoethyl]-1,3-thiazolidine-4-carb oxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Oxacillin, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAV 1S6 sing 15 n n OAQ CAV 1S6 sing 16 n y OAQ NAN 1S6 sing 17 n y CAV CAY 1S6 doub 18 n y NAN CAX 1S6 doub 19 n y OAF CAU 1S6 doub 20 n n CAY CAU 1S6 sing 21 n n CAY CAX 1S6 sing 22 n y CAU N 1S6 sing 23 n n CAX CAW 1S6 sing 24 n n CAM CAW 1S6 doub 25 n y CAM CAK 1S6 sing 26 n y N CA 1S6 sing 27 n n CAW CAL 1S6 sing 28 n y CA C 1S6 sing 29 n n CA CB 1S6 sing 30 n n CAK CAI 1S6 doub 31 n y C OXT 1S6 doub 32 n n CAL CAJ 1S6 doub 33 n y CB SAR 1S6 sing 34 n n CB NAP 1S6 sing 35 n n SAR CBC 1S6 sing 36 n n CAI CAJ 1S6 sing 37 n y NAP CBB 1S6 sing 38 n n CBC CBB 1S6 sing 39 n n CBC CAB 1S6 sing 40 n n CBC CAC 1S6 sing 41 n n CBB CAT 1S6 sing 42 n n CAT OAE 1S6 doub 43 n n CAT OAH 1S6 sing 44 n n C H1 1S6 sing 45 n n N H2 1S6 sing 46 n n CA H3 1S6 sing 47 n n CB H4 1S6 sing 48 n n CAA H5 1S6 sing 49 n n CAA H6 1S6 sing 50 n n CAA H7 1S6 sing 51 n n CAB H8 1S6 sing 52 n n CAB H9 1S6 sing 53 n n CAB H10 1S6 sing 54 n n CAC H11 1S6 sing 55 n n CAC H12 1S6 sing 56 n n CAC H13 1S6 sing 57 n n OAH H14 1S6 sing 58 n n CAI H15 1S6 sing 59 n n CAJ H16 1S6 sing 60 n n CAK H17 1S6 sing 61 n n CAL H18 1S6 sing 62 n n CAM H19 1S6 sing 63 n n NAP H20 1S6 sing 64 n n CBB H22 1S6 sing 65 n n # _atom_sites.entry_id 7PSE _atom_sites.fract_transf_matrix[1][1] 0.022306 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1S6 AAA 1 301 301 1S6 1S6 . D 3 1BO AAA 1 302 401 1BO 1BO . E 3 1BO AAA 1 303 501 1BO 1BO . F 4 CL AAA 1 304 1 CL CL . G 2 1S6 BBB 1 301 301 1S6 1S6 . H 3 1BO BBB 1 302 401 1BO 1BO . I 3 1BO BBB 1 303 501 1BO 1BO . J 5 HOH AAA 1 401 39 HOH HOH . J 5 HOH AAA 2 402 19 HOH HOH . J 5 HOH AAA 3 403 13 HOH HOH . J 5 HOH AAA 4 404 66 HOH HOH . J 5 HOH AAA 5 405 35 HOH HOH . J 5 HOH AAA 6 406 62 HOH HOH . J 5 HOH AAA 7 407 36 HOH HOH . J 5 HOH AAA 8 408 65 HOH HOH . J 5 HOH AAA 9 409 4 HOH HOH . J 5 HOH AAA 10 410 3 HOH HOH . J 5 HOH AAA 11 411 31 HOH HOH . J 5 HOH AAA 12 412 50 HOH HOH . J 5 HOH AAA 13 413 34 HOH HOH . J 5 HOH AAA 14 414 43 HOH HOH . J 5 HOH AAA 15 415 6 HOH HOH . J 5 HOH AAA 16 416 18 HOH HOH . J 5 HOH AAA 17 417 16 HOH HOH . J 5 HOH AAA 18 418 48 HOH HOH . J 5 HOH AAA 19 419 52 HOH HOH . J 5 HOH AAA 20 420 23 HOH HOH . J 5 HOH AAA 21 421 27 HOH HOH . J 5 HOH AAA 22 422 73 HOH HOH . J 5 HOH AAA 23 423 5 HOH HOH . J 5 HOH AAA 24 424 70 HOH HOH . J 5 HOH AAA 25 425 72 HOH HOH . J 5 HOH AAA 26 426 63 HOH HOH . J 5 HOH AAA 27 427 24 HOH HOH . J 5 HOH AAA 28 428 21 HOH HOH . J 5 HOH AAA 29 429 61 HOH HOH . J 5 HOH AAA 30 430 56 HOH HOH . K 5 HOH BBB 1 401 37 HOH HOH . K 5 HOH BBB 2 402 7 HOH HOH . K 5 HOH BBB 3 403 67 HOH HOH . K 5 HOH BBB 4 404 54 HOH HOH . K 5 HOH BBB 5 405 71 HOH HOH . K 5 HOH BBB 6 406 15 HOH HOH . K 5 HOH BBB 7 407 44 HOH HOH . K 5 HOH BBB 8 408 14 HOH HOH . K 5 HOH BBB 9 409 64 HOH HOH . K 5 HOH BBB 10 410 28 HOH HOH . K 5 HOH BBB 11 411 8 HOH HOH . K 5 HOH BBB 12 412 9 HOH HOH . K 5 HOH BBB 13 413 46 HOH HOH . K 5 HOH BBB 14 414 75 HOH HOH . K 5 HOH BBB 15 415 40 HOH HOH . K 5 HOH BBB 16 416 30 HOH HOH . K 5 HOH BBB 17 417 45 HOH HOH . K 5 HOH BBB 18 418 47 HOH HOH . K 5 HOH BBB 19 419 41 HOH HOH . K 5 HOH BBB 20 420 53 HOH HOH . K 5 HOH BBB 21 421 1 HOH HOH . K 5 HOH BBB 22 422 20 HOH HOH . K 5 HOH BBB 23 423 38 HOH HOH . K 5 HOH BBB 24 424 11 HOH HOH . K 5 HOH BBB 25 425 25 HOH HOH . K 5 HOH BBB 26 426 51 HOH HOH . K 5 HOH BBB 27 427 17 HOH HOH . K 5 HOH BBB 28 428 49 HOH HOH . K 5 HOH BBB 29 429 69 HOH HOH . K 5 HOH BBB 30 430 59 HOH HOH . K 5 HOH BBB 31 431 55 HOH HOH . K 5 HOH BBB 32 432 29 HOH HOH . K 5 HOH BBB 33 433 74 HOH HOH . K 5 HOH BBB 34 434 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 1S6 . . . C 2 17.674 42.206 3.612 0.9 34.12 0 C 1S6 301 AAA 1 HETATM 2 N N 1S6 . . . C 2 16.671 44.39 3.397 0.9 35.88 0 N 1S6 301 AAA 1 HETATM 3 C CA 1S6 . . . C 2 17.022 43.349 4.338 0.9 35.2 0 CA 1S6 301 AAA 1 HETATM 4 C CB 1S6 . . . C 2 15.816 42.822 5.046 0.9 33.48 0 CB 1S6 301 AAA 1 HETATM 5 C CAA 1S6 . . . C 2 18.886 45.326 -0.374 0.9 40.02 0 CAA 1S6 301 AAA 1 HETATM 6 C CAB 1S6 . . . C 2 12.526 44.212 6.643 0.9 33.83 0 CAB 1S6 301 AAA 1 HETATM 7 C CAC 1S6 . . . C 2 13.778 42.127 7.109 0.9 34.02 0 CAC 1S6 301 AAA 1 HETATM 8 O OAE 1S6 . . . C 2 12.944 40.503 4.478 0.9 38.37 0 OAE 1S6 301 AAA 1 HETATM 9 O OAF 1S6 . . . C 2 18.799 44.694 2.693 0.9 36.5 0 OAF 1S6 301 AAA 1 HETATM 10 O OAH 1S6 . . . C 2 11.282 41.846 5.062 0.9 41.22 0 OAH 1S6 301 AAA 1 HETATM 11 C CAI 1S6 . . . C 2 12.625 47.321 4.028 0.9 40.04 0 CAI 1S6 301 AAA 1 HETATM 12 C CAJ 1S6 . . . C 2 12.35 46.495 2.968 0.9 41.03 0 CAJ 1S6 301 AAA 1 HETATM 13 C CAK 1S6 . . . C 2 13.909 47.782 4.205 0.9 41.53 0 CAK 1S6 301 AAA 1 HETATM 14 C CAL 1S6 . . . C 2 13.357 46.132 2.082 0.9 43.22 0 CAL 1S6 301 AAA 1 HETATM 15 C CAM 1S6 . . . C 2 14.915 47.422 3.322 0.9 41.05 0 CAM 1S6 301 AAA 1 HETATM 16 N NAN 1S6 . . . C 2 15.581 46.741 0.094 0.9 40.16 0 NAN 1S6 301 AAA 1 HETATM 17 N NAP 1S6 . . . C 2 14.712 42.523 4.136 0.9 33.05 0 NAP 1S6 301 AAA 1 HETATM 18 O OAQ 1S6 . . . C 2 16.759 46.421 -0.614 0.9 43.03 0 OAQ 1S6 301 AAA 1 HETATM 19 S SAR 1S6 . . . C 2 15.255 44.184 6.087 0.9 33.1 0 SAR 1S6 301 AAA 1 HETATM 20 C CAT 1S6 . . . C 2 12.446 41.617 4.72 0.9 39.09 0 CAT 1S6 301 AAA 1 HETATM 21 C CAU 1S6 . . . C 2 17.583 44.91 2.587 0.9 37.87 0 CAU 1S6 301 AAA 1 HETATM 22 C CAV 1S6 . . . C 2 17.593 45.76 0.21 0.9 41.17 0 CAV 1S6 301 AAA 1 HETATM 23 C CAW 1S6 . . . C 2 14.663 46.546 2.273 0.9 39.74 0 CAW 1S6 301 AAA 1 HETATM 24 C CAX 1S6 . . . C 2 15.725 46.242 1.299 0.9 39.15 0 CAX 1S6 301 AAA 1 HETATM 25 C CAY 1S6 . . . C 2 17.015 45.64 1.431 0.9 39.35 0 CAY 1S6 301 AAA 1 HETATM 26 C CBB 1S6 . . . C 2 13.382 42.835 4.685 0.9 34.48 0 CBB 1S6 301 AAA 1 HETATM 27 C CBC 1S6 . . . C 2 13.631 43.29 6.145 0.9 34.75 0 CBC 1S6 301 AAA 1 HETATM 28 O OXT 1S6 . . . C 2 17.232 41.72 2.614 0.9 40.44 0 OXT 1S6 301 AAA 1 HETATM 29 H H2 1S6 . . . C 2 15.852 44.682 3.372 0.9 36.19 0 H2 1S6 301 AAA 1 HETATM 30 H H3 1S6 . . . C 2 17.664 43.717 4.995 0.9 34.78 0 H3 1S6 301 AAA 1 HETATM 31 H H4 1S6 . . . C 2 16.07 42.025 5.563 0.9 33.67 0 H4 1S6 301 AAA 1 HETATM 32 H H5 1S6 . . . C 2 19.462 44.982 0.327 0.9 40.38 0 H5 1S6 301 AAA 1 HETATM 33 H H6 1S6 . . . C 2 19.317 46.081 -0.805 0.9 40.44 0 H6 1S6 301 AAA 1 HETATM 34 H H7 1S6 . . . C 2 18.726 44.629 -1.031 0.9 40.38 0 H7 1S6 301 AAA 1 HETATM 35 H H8 1S6 . . . C 2 12.88 45.109 6.751 0.9 34.14 0 H8 1S6 301 AAA 1 HETATM 36 H H9 1S6 . . . C 2 12.192 43.893 7.496 0.9 34.11 0 H9 1S6 301 AAA 1 HETATM 37 H H10 1S6 . . . C 2 11.801 44.228 5.998 0.9 34.13 0 H10 1S6 301 AAA 1 HETATM 38 H H11 1S6 . . . C 2 14.37 42.387 7.839 0.9 34.26 0 H11 1S6 301 AAA 1 HETATM 39 H H12 1S6 . . . C 2 14.159 41.361 6.642 0.9 34.26 0 H12 1S6 301 AAA 1 HETATM 40 H H13 1S6 . . . C 2 12.904 41.887 7.469 0.9 34.25 0 H13 1S6 301 AAA 1 HETATM 41 H H15 1S6 . . . C 2 11.943 47.561 4.634 0.9 40.67 0 H15 1S6 301 AAA 1 HETATM 42 H H16 1S6 . . . C 2 11.476 46.168 2.84 0.9 41.24 0 H16 1S6 301 AAA 1 HETATM 43 H H17 1S6 . . . C 2 14.108 48.345 4.935 0.9 41.07 0 H17 1S6 301 AAA 1 HETATM 44 H H18 1S6 . . . C 2 13.156 45.568 1.358 0.9 41.77 0 H18 1S6 301 AAA 1 HETATM 45 H H19 1S6 . . . C 2 15.788 47.745 3.456 0.9 40.86 0 H19 1S6 301 AAA 1 HETATM 46 H H20 1S6 . . . C 2 14.715 41.695 3.809 0.9 33.49 0 H20 1S6 301 AAA 1 HETATM 47 H H22 1S6 . . . C 2 12.971 43.564 4.156 0.9 35.08 0 H22 1S6 301 AAA 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 47 #