data_7PSM
#
_model_server_result.job_id            nZoyy_sLM9cJUixMITRgrw 
_model_server_result.datetime_utc      '2024-10-15 11:21:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7psm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":703}' 
#
_entry.id    7PSM 
#
_exptl.entry_id    7PSM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              661.89 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PSM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PSM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 426 A GLN 517 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc2 C O1G ANP . A ANP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc3 C O3G ANP . A ANP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc4 C O1B ANP . A ANP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc5 C O2B ANP . A ANP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc6 B OE1 GLN 426 B GLN 517 1_555 G MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc7 F O1G ANP . B ANP 701 1_555 G MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc8 F O3G ANP . B ANP 701 1_555 G MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc9 F O1B ANP . B ANP 701 1_555 G MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc10 F O2B ANP . B ANP 701 1_555 G MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
#
_chem_comp.formula           'C35 H68 N O8 P' 
_chem_comp.formula_weight    661.89 
_chem_comp.id                LOP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LAURYL OLEYL PHOSPHATIDYL ETHANOLAMINE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 LOP sing 242 n n 
N1 HN11 LOP sing 243 n n 
N1 HN12 LOP sing 244 n n 
C1 C2 LOP sing 245 n n 
C1 H11 LOP sing 246 n n 
C1 H12 LOP sing 247 n n 
C2 O1 LOP sing 248 n n 
C2 H21 LOP sing 249 n n 
C2 H22 LOP sing 250 n n 
O1 P1 LOP sing 251 n n 
P1 O2 LOP sing 252 n n 
P1 O3 LOP sing 253 n n 
P1 O4 LOP doub 254 n n 
O2 C3 LOP sing 255 n n 
O3 HO3 LOP sing 256 n n 
C3 C4 LOP sing 257 n n 
C3 H31 LOP sing 258 n n 
C3 H32 LOP sing 259 n n 
C4 C5 LOP sing 260 n n 
C4 O5 LOP sing 261 n n 
C4 H4 LOP sing 262 n n 
C5 O6 LOP sing 263 n n 
C5 H51 LOP sing 264 n n 
C5 H52 LOP sing 265 n n 
O5 C6 LOP sing 266 n n 
O6 C24 LOP sing 267 n n 
C6 O7 LOP doub 268 n n 
C6 C7 LOP sing 269 n n 
C7 C8 LOP sing 270 n n 
C7 H71 LOP sing 271 n n 
C7 H72 LOP sing 272 n n 
C8 C9 LOP sing 273 n n 
C8 H81 LOP sing 274 n n 
C8 H82 LOP sing 275 n n 
C9 C10 LOP sing 276 n n 
C9 H91 LOP sing 277 n n 
C9 H92 LOP sing 278 n n 
C10 C11 LOP sing 279 n n 
C10 H101 LOP sing 280 n n 
C10 H102 LOP sing 281 n n 
C11 C12 LOP sing 282 n n 
C11 H111 LOP sing 283 n n 
C11 H112 LOP sing 284 n n 
C12 C13 LOP sing 285 n n 
C12 H121 LOP sing 286 n n 
C12 H122 LOP sing 287 n n 
C13 C14 LOP sing 288 n n 
C13 H131 LOP sing 289 n n 
C13 H132 LOP sing 290 n n 
C14 C15 LOP doub 291 z n 
C14 H14 LOP sing 292 n n 
C15 C16 LOP sing 293 n n 
C15 H15 LOP sing 294 n n 
C16 C17 LOP sing 295 n n 
C16 H161 LOP sing 296 n n 
C16 H162 LOP sing 297 n n 
C17 C18 LOP sing 298 n n 
C17 H171 LOP sing 299 n n 
C17 H172 LOP sing 300 n n 
C18 C19 LOP sing 301 n n 
C18 H181 LOP sing 302 n n 
C18 H182 LOP sing 303 n n 
C19 C20 LOP sing 304 n n 
C19 H191 LOP sing 305 n n 
C19 H192 LOP sing 306 n n 
C20 C21 LOP sing 307 n n 
C20 H201 LOP sing 308 n n 
C20 H202 LOP sing 309 n n 
C21 C22 LOP sing 310 n n 
C21 H211 LOP sing 311 n n 
C21 H212 LOP sing 312 n n 
C22 C23 LOP sing 313 n n 
C22 H221 LOP sing 314 n n 
C22 H222 LOP sing 315 n n 
C23 H231 LOP sing 316 n n 
C23 H232 LOP sing 317 n n 
C23 H233 LOP sing 318 n n 
C24 O8 LOP doub 319 n n 
C24 C25 LOP sing 320 n n 
C25 C26 LOP sing 321 n n 
C25 H251 LOP sing 322 n n 
C25 H252 LOP sing 323 n n 
C26 C27 LOP sing 324 n n 
C26 H261 LOP sing 325 n n 
C26 H262 LOP sing 326 n n 
C27 C28 LOP sing 327 n n 
C27 H271 LOP sing 328 n n 
C27 H272 LOP sing 329 n n 
C28 C29 LOP sing 330 n n 
C28 H281 LOP sing 331 n n 
C28 H282 LOP sing 332 n n 
C29 C30 LOP sing 333 n n 
C29 H291 LOP sing 334 n n 
C29 H292 LOP sing 335 n n 
C30 C31 LOP sing 336 n n 
C30 H301 LOP sing 337 n n 
C30 H302 LOP sing 338 n n 
C31 C32 LOP sing 339 n n 
C31 H311 LOP sing 340 n n 
C31 H312 LOP sing 341 n n 
C32 C33 LOP sing 342 n n 
C32 H321 LOP sing 343 n n 
C32 H322 LOP sing 344 n n 
C33 C34 LOP sing 345 n n 
C33 H331 LOP sing 346 n n 
C33 H332 LOP sing 347 n n 
C34 C35 LOP sing 348 n n 
C34 H341 LOP sing 349 n n 
C34 H342 LOP sing 350 n n 
C35 H351 LOP sing 351 n n 
C35 H352 LOP sing 352 n n 
C35 H353 LOP sing 353 n n 
#
_atom_sites.entry_id                     7PSM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ANP A 1 701 701 ANP ANP . 
D 3 MG A 1 702 702 MG MG . 
E 4 LOP A 1 703 801 LOP LOP . 
F 2 ANP B 1 701 703 ANP ANP . 
G 3 MG B 1 702 704 MG MG . 
H 4 LOP B 1 703 802 LOP LOP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LOP . . . H 4 116.61 146.862 98.581 1 120.97 ? N1 LOP 703 B 1 
HETATM 2 C C1 LOP . . . H 4 116.147 146.389 97.291 1 120.97 ? C1 LOP 703 B 1 
HETATM 3 C C2 LOP . . . H 4 116.677 144.98 97.049 1 120.97 ? C2 LOP 703 B 1 
HETATM 4 O O1 LOP . . . H 4 117.963 144.866 97.582 1 120.97 ? O1 LOP 703 B 1 
HETATM 5 P P1 LOP . . . H 4 118.839 143.53 97.211 1 120.97 ? P1 LOP 703 B 1 
HETATM 6 O O2 LOP . . . H 4 119.837 143.187 98.455 1 120.97 ? O2 LOP 703 B 1 
HETATM 7 O O3 LOP . . . H 4 119.628 143.759 95.953 1 120.97 ? O3 LOP 703 B 1 
HETATM 8 O O4 LOP . . . H 4 117.922 142.368 96.987 1 120.97 ? O4 LOP 703 B 1 
HETATM 9 C C3 LOP . . . H 4 119.875 144.069 99.528 1 120.97 ? C3 LOP 703 B 1 
HETATM 10 C C4 LOP . . . H 4 119.173 143.36 100.667 1 120.97 ? C4 LOP 703 B 1 
HETATM 11 C C5 LOP . . . H 4 119.734 143.853 101.989 1 120.97 ? C5 LOP 703 B 1 
HETATM 12 O O5 LOP . . . H 4 117.832 143.698 100.607 1 120.97 ? O5 LOP 703 B 1 
HETATM 13 O O6 LOP . . . H 4 118.984 143.249 102.991 1 120.97 ? O6 LOP 703 B 1 
HETATM 14 C C6 LOP . . . H 4 116.973 142.632 100.379 1 120.97 ? C6 LOP 703 B 1 
HETATM 15 O O7 LOP . . . H 4 117.393 141.665 99.867 1 120.97 ? O7 LOP 703 B 1 
HETATM 16 C C7 LOP . . . H 4 115.505 142.722 100.776 1 120.97 ? C7 LOP 703 B 1 
HETATM 17 C C8 LOP . . . H 4 115.338 142.475 102.267 1 120.97 ? C8 LOP 703 B 1 
HETATM 18 C C9 LOP . . . H 4 114.16 141.538 102.493 1 120.97 ? C9 LOP 703 B 1 
HETATM 19 C C10 LOP . . . H 4 114.481 140.611 103.653 1 120.97 ? C10 LOP 703 B 1 
HETATM 20 C C11 LOP . . . H 4 113.5 140.819 104.791 1 120.97 ? C11 LOP 703 B 1 
HETATM 21 C C12 LOP . . . H 4 114.314 140.936 106.065 1 120.97 ? C12 LOP 703 B 1 
HETATM 22 C C13 LOP . . . H 4 113.387 140.848 107.264 1 120.97 ? C13 LOP 703 B 1 
HETATM 23 C C14 LOP . . . H 4 113.901 139.722 108.14 1 120.97 ? C14 LOP 703 B 1 
HETATM 24 C C15 LOP . . . H 4 113.546 139.597 109.396 1 120.97 ? C15 LOP 703 B 1 
HETATM 25 C C16 LOP . . . H 4 112.591 140.574 110.056 1 120.97 ? C16 LOP 703 B 1 
HETATM 26 C C17 LOP . . . H 4 112.25 140.014 111.43 1 120.97 ? C17 LOP 703 B 1 
HETATM 27 C C18 LOP . . . H 4 113.297 140.489 112.427 1 120.97 ? C18 LOP 703 B 1 
HETATM 28 C C19 LOP . . . H 4 113.023 139.881 113.797 1 120.97 ? C19 LOP 703 B 1 
HETATM 29 C C20 LOP . . . H 4 112.571 140.968 114.763 1 120.97 ? C20 LOP 703 B 1 
HETATM 30 C C21 LOP . . . H 4 113.286 140.82 116.104 1 120.97 ? C21 LOP 703 B 1 
HETATM 31 C C22 LOP . . . H 4 113.388 139.352 116.509 1 120.97 ? C22 LOP 703 B 1 
HETATM 32 C C23 LOP . . . H 4 114.096 139.257 117.861 1 120.97 ? C23 LOP 703 B 1 
HETATM 33 C C24 LOP . . . H 4 119.269 143.688 104.268 1 120.97 ? C24 LOP 703 B 1 
HETATM 34 O O8 LOP . . . H 4 120.027 144.56 104.422 1 120.97 ? O8 LOP 703 B 1 
HETATM 35 C C25 LOP . . . H 4 118.604 143.047 105.463 1 120.97 ? C25 LOP 703 B 1 
HETATM 36 C C26 LOP . . . H 4 117.297 143.756 105.738 1 120.97 ? C26 LOP 703 B 1 
HETATM 37 C C27 LOP . . . H 4 117.314 144.189 107.19 1 120.97 ? C27 LOP 703 B 1 
HETATM 38 C C28 LOP . . . H 4 116.009 144.904 107.502 1 120.97 ? C28 LOP 703 B 1 
HETATM 39 C C29 LOP . . . H 4 115.23 144.082 108.521 1 120.97 ? C29 LOP 703 B 1 
HETATM 40 C C30 LOP . . . H 4 115.881 144.194 109.891 1 120.97 ? C30 LOP 703 B 1 
HETATM 41 C C31 LOP . . . H 4 114.782 144.472 110.906 1 120.97 ? C31 LOP 703 B 1 
HETATM 42 C C32 LOP . . . H 4 114.564 145.976 111.012 1 120.97 ? C32 LOP 703 B 1 
HETATM 43 C C33 LOP . . . H 4 113.846 146.3 112.317 1 120.97 ? C33 LOP 703 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#