data_7PSO # _model_server_result.job_id gQOguM0JPBrYI_LuBSIvdg _model_server_result.datetime_utc '2024-12-02 07:53:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pso # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":202}' # _entry.id 7PSO # _exptl.entry_id 7PSO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.229 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-Thalidomide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PSO _cell.length_a 56.562 _cell.length_b 60.162 _cell.length_c 88.406 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PSO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,M 1 1 B,G,H,I,N 2 1 C,J,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 24 A CYS 24 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 A SG CYS 27 A CYS 27 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc3 A SG CYS 90 A CYS 90 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc4 A SG CYS 93 A CYS 93 1_555 D ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc5 B SG CYS 24 B CYS 24 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc6 B SG CYS 27 B CYS 27 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc7 B SG CYS 90 B CYS 90 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc8 B SG CYS 93 B CYS 93 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc9 C SG CYS 24 C CYS 24 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc10 C SG CYS 27 C CYS 27 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc11 C SG CYS 90 C CYS 90 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc12 C SG CYS 93 C CYS 93 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'C13 H10 N2 O4' _chem_comp.formula_weight 258.229 _chem_comp.id EF2 _chem_comp.mon_nstd_flag . _chem_comp.name S-Thalidomide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 EF2 doub 120 n n C02 N03 EF2 sing 121 n n C02 C08 EF2 sing 122 n n N03 C04 EF2 sing 123 n n C04 O05 EF2 doub 124 n n C04 C06 EF2 sing 125 n n C06 C07 EF2 sing 126 n n C07 C08 EF2 sing 127 n n C08 N09 EF2 sing 128 n n N09 C3 EF2 sing 129 n n N09 C4 EF2 sing 130 n n C11 C12 EF2 sing 131 n y C11 C20 EF2 doub 132 n y C12 C13 EF2 doub 133 n y C13 C14 EF2 sing 134 n y C13 C4 EF2 sing 135 n n C14 C19 EF2 doub 136 n y C14 C3 EF2 sing 137 n n O16 C4 EF2 doub 138 n n O18 C3 EF2 doub 139 n n C19 C20 EF2 sing 140 n y N03 H03 EF2 sing 141 n n C08 H08 EF2 sing 142 n n C06 H061 EF2 sing 143 n n C06 H062 EF2 sing 144 n n C07 H071 EF2 sing 145 n n C07 H072 EF2 sing 146 n n C11 H11 EF2 sing 147 n n C12 H12 EF2 sing 148 n n C20 H20 EF2 sing 149 n n C19 H19 EF2 sing 150 n n # _atom_sites.entry_id 7PSO _atom_sites.fract_transf_matrix[1][1] 0.01768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 201 150 ZN ZN . E 3 EF2 A 1 202 2 EF2 EF2 . F 4 PO4 A 1 203 1 PO4 PO4 . G 2 ZN B 1 201 150 ZN ZN . H 3 EF2 B 1 202 1 EF2 EF2 . I 4 PO4 B 1 203 2 PO4 PO4 . J 2 ZN C 1 201 1 ZN ZN . K 5 835 C 1 202 1 835 cRG . L 4 PO4 C 1 203 3 PO4 PO4 . M 6 HOH A 1 301 88 HOH HOH . M 6 HOH A 2 302 46 HOH HOH . M 6 HOH A 3 303 85 HOH HOH . M 6 HOH A 4 304 173 HOH HOH . M 6 HOH A 5 305 68 HOH HOH . M 6 HOH A 6 306 143 HOH HOH . M 6 HOH A 7 307 28 HOH HOH . M 6 HOH A 8 308 107 HOH HOH . M 6 HOH A 9 309 11 HOH HOH . M 6 HOH A 10 310 159 HOH HOH . M 6 HOH A 11 311 33 HOH HOH . M 6 HOH A 12 312 29 HOH HOH . M 6 HOH A 13 313 84 HOH HOH . M 6 HOH A 14 314 70 HOH HOH . M 6 HOH A 15 315 178 HOH HOH . M 6 HOH A 16 316 23 HOH HOH . M 6 HOH A 17 317 8 HOH HOH . M 6 HOH A 18 318 80 HOH HOH . M 6 HOH A 19 319 24 HOH HOH . M 6 HOH A 20 320 73 HOH HOH . M 6 HOH A 21 321 83 HOH HOH . M 6 HOH A 22 322 63 HOH HOH . M 6 HOH A 23 323 12 HOH HOH . M 6 HOH A 24 324 52 HOH HOH . M 6 HOH A 25 325 22 HOH HOH . M 6 HOH A 26 326 126 HOH HOH . M 6 HOH A 27 327 167 HOH HOH . M 6 HOH A 28 328 82 HOH HOH . M 6 HOH A 29 329 51 HOH HOH . M 6 HOH A 30 330 43 HOH HOH . M 6 HOH A 31 331 47 HOH HOH . M 6 HOH A 32 332 7 HOH HOH . M 6 HOH A 33 333 89 HOH HOH . M 6 HOH A 34 334 15 HOH HOH . M 6 HOH A 35 335 127 HOH HOH . M 6 HOH A 36 336 49 HOH HOH . M 6 HOH A 37 337 48 HOH HOH . M 6 HOH A 38 338 26 HOH HOH . M 6 HOH A 39 339 35 HOH HOH . M 6 HOH A 40 340 64 HOH HOH . M 6 HOH A 41 341 92 HOH HOH . M 6 HOH A 42 342 10 HOH HOH . M 6 HOH A 43 343 20 HOH HOH . M 6 HOH A 44 344 34 HOH HOH . M 6 HOH A 45 345 50 HOH HOH . M 6 HOH A 46 346 93 HOH HOH . M 6 HOH A 47 347 78 HOH HOH . M 6 HOH A 48 348 75 HOH HOH . M 6 HOH A 49 349 16 HOH HOH . M 6 HOH A 50 350 38 HOH HOH . M 6 HOH A 51 351 65 HOH HOH . M 6 HOH A 52 352 69 HOH HOH . M 6 HOH A 53 353 122 HOH HOH . M 6 HOH A 54 354 125 HOH HOH . M 6 HOH A 55 355 56 HOH HOH . M 6 HOH A 56 356 140 HOH HOH . M 6 HOH A 57 357 39 HOH HOH . M 6 HOH A 58 358 175 HOH HOH . M 6 HOH A 59 359 13 HOH HOH . M 6 HOH A 60 360 62 HOH HOH . M 6 HOH A 61 361 42 HOH HOH . M 6 HOH A 62 362 151 HOH HOH . M 6 HOH A 63 363 163 HOH HOH . M 6 HOH A 64 364 174 HOH HOH . M 6 HOH A 65 365 128 HOH HOH . M 6 HOH A 66 366 112 HOH HOH . M 6 HOH A 67 367 72 HOH HOH . M 6 HOH A 68 368 160 HOH HOH . M 6 HOH A 69 369 90 HOH HOH . M 6 HOH A 70 370 150 HOH HOH . M 6 HOH A 71 371 162 HOH HOH . M 6 HOH A 72 372 91 HOH HOH . M 6 HOH A 73 373 161 HOH HOH . N 6 HOH B 1 301 55 HOH HOH . N 6 HOH B 2 302 61 HOH HOH . N 6 HOH B 3 303 103 HOH HOH . N 6 HOH B 4 304 41 HOH HOH . N 6 HOH B 5 305 97 HOH HOH . N 6 HOH B 6 306 105 HOH HOH . N 6 HOH B 7 307 9 HOH HOH . N 6 HOH B 8 308 152 HOH HOH . N 6 HOH B 9 309 131 HOH HOH . N 6 HOH B 10 310 31 HOH HOH . N 6 HOH B 11 311 101 HOH HOH . N 6 HOH B 12 312 25 HOH HOH . N 6 HOH B 13 313 155 HOH HOH . N 6 HOH B 14 314 57 HOH HOH . N 6 HOH B 15 315 96 HOH HOH . N 6 HOH B 16 316 87 HOH HOH . N 6 HOH B 17 317 130 HOH HOH . N 6 HOH B 18 318 21 HOH HOH . N 6 HOH B 19 319 188 HOH HOH . N 6 HOH B 20 320 177 HOH HOH . N 6 HOH B 21 321 111 HOH HOH . N 6 HOH B 22 322 17 HOH HOH . N 6 HOH B 23 323 1 HOH HOH . N 6 HOH B 24 324 27 HOH HOH . N 6 HOH B 25 325 141 HOH HOH . N 6 HOH B 26 326 176 HOH HOH . N 6 HOH B 27 327 124 HOH HOH . N 6 HOH B 28 328 184 HOH HOH . N 6 HOH B 29 329 14 HOH HOH . N 6 HOH B 30 330 2 HOH HOH . N 6 HOH B 31 331 71 HOH HOH . N 6 HOH B 32 332 18 HOH HOH . N 6 HOH B 33 333 3 HOH HOH . N 6 HOH B 34 334 102 HOH HOH . N 6 HOH B 35 335 30 HOH HOH . N 6 HOH B 36 336 110 HOH HOH . N 6 HOH B 37 337 54 HOH HOH . N 6 HOH B 38 338 108 HOH HOH . N 6 HOH B 39 339 106 HOH HOH . N 6 HOH B 40 340 4 HOH HOH . N 6 HOH B 41 341 32 HOH HOH . N 6 HOH B 42 342 19 HOH HOH . N 6 HOH B 43 343 59 HOH HOH . N 6 HOH B 44 344 5 HOH HOH . N 6 HOH B 45 345 123 HOH HOH . N 6 HOH B 46 346 99 HOH HOH . N 6 HOH B 47 347 98 HOH HOH . N 6 HOH B 48 348 129 HOH HOH . N 6 HOH B 49 349 58 HOH HOH . N 6 HOH B 50 350 40 HOH HOH . N 6 HOH B 51 351 6 HOH HOH . N 6 HOH B 52 352 36 HOH HOH . N 6 HOH B 53 353 185 HOH HOH . N 6 HOH B 54 354 156 HOH HOH . N 6 HOH B 55 355 180 HOH HOH . N 6 HOH B 56 356 104 HOH HOH . N 6 HOH B 57 357 154 HOH HOH . N 6 HOH B 58 358 157 HOH HOH . N 6 HOH B 59 359 44 HOH HOH . N 6 HOH B 60 360 53 HOH HOH . N 6 HOH B 61 361 187 HOH HOH . N 6 HOH B 62 362 133 HOH HOH . N 6 HOH B 63 363 100 HOH HOH . N 6 HOH B 64 364 172 HOH HOH . N 6 HOH B 65 365 66 HOH HOH . N 6 HOH B 66 366 158 HOH HOH . N 6 HOH B 67 367 67 HOH HOH . N 6 HOH B 68 368 153 HOH HOH . N 6 HOH B 69 369 109 HOH HOH . N 6 HOH B 70 370 37 HOH HOH . N 6 HOH B 71 371 60 HOH HOH . O 6 HOH C 1 301 116 HOH HOH . O 6 HOH C 2 302 164 HOH HOH . O 6 HOH C 3 303 76 HOH HOH . O 6 HOH C 4 304 148 HOH HOH . O 6 HOH C 5 305 95 HOH HOH . O 6 HOH C 6 306 168 HOH HOH . O 6 HOH C 7 307 137 HOH HOH . O 6 HOH C 8 308 136 HOH HOH . O 6 HOH C 9 309 171 HOH HOH . O 6 HOH C 10 310 77 HOH HOH . O 6 HOH C 11 311 120 HOH HOH . O 6 HOH C 12 312 165 HOH HOH . O 6 HOH C 13 313 135 HOH HOH . O 6 HOH C 14 314 113 HOH HOH . O 6 HOH C 15 315 138 HOH HOH . O 6 HOH C 16 316 45 HOH HOH . O 6 HOH C 17 317 183 HOH HOH . O 6 HOH C 18 318 146 HOH HOH . O 6 HOH C 19 319 139 HOH HOH . O 6 HOH C 20 320 94 HOH HOH . O 6 HOH C 21 321 118 HOH HOH . O 6 HOH C 22 322 132 HOH HOH . O 6 HOH C 23 323 119 HOH HOH . O 6 HOH C 24 324 166 HOH HOH . O 6 HOH C 25 325 147 HOH HOH . O 6 HOH C 26 326 144 HOH HOH . O 6 HOH C 27 327 145 HOH HOH . O 6 HOH C 28 328 182 HOH HOH . O 6 HOH C 29 329 86 HOH HOH . O 6 HOH C 30 330 170 HOH HOH . O 6 HOH C 31 331 149 HOH HOH . O 6 HOH C 32 332 81 HOH HOH . O 6 HOH C 33 333 169 HOH HOH . O 6 HOH C 34 334 114 HOH HOH . O 6 HOH C 35 335 181 HOH HOH . O 6 HOH C 36 336 121 HOH HOH . O 6 HOH C 37 337 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 EF2 . . . H 3 22.258 15.541 25.733 1 20.78 ? O01 EF2 202 B 1 HETATM 2 C C02 EF2 . . . H 3 22.846 14.503 26.143 1 21.2 ? C02 EF2 202 B 1 HETATM 3 N N03 EF2 . . . H 3 22.5 13.294 25.681 1 20.41 ? N03 EF2 202 B 1 HETATM 4 C C04 EF2 . . . H 3 23.235 12.133 25.911 1 19.67 ? C04 EF2 202 B 1 HETATM 5 O O05 EF2 . . . H 3 22.909 11.131 25.304 1 19.64 ? O05 EF2 202 B 1 HETATM 6 C C06 EF2 . . . H 3 24.424 12.198 26.797 1 21.97 ? C06 EF2 202 B 1 HETATM 7 C C07 EF2 . . . H 3 24.273 13.331 27.807 1 22.14 ? C07 EF2 202 B 1 HETATM 8 C C08 EF2 . . . H 3 24.023 14.611 27.041 1 22.05 ? C08 EF2 202 B 1 HETATM 9 N N09 EF2 . . . H 3 23.865 15.74 27.981 1 21.52 ? N09 EF2 202 B 1 HETATM 10 C C11 EF2 . . . H 3 22.635 18.938 31.068 1 38.29 ? C11 EF2 202 B 1 HETATM 11 C C12 EF2 . . . H 3 22.112 17.797 30.479 1 37.82 ? C12 EF2 202 B 1 HETATM 12 C C13 EF2 . . . H 3 22.941 17.16 29.568 1 27.41 ? C13 EF2 202 B 1 HETATM 13 C C14 EF2 . . . H 3 24.252 17.657 29.243 1 29.03 ? C14 EF2 202 B 1 HETATM 14 O O16 EF2 . . . H 3 21.768 15.193 28.693 1 24.56 ? O16 EF2 202 B 1 HETATM 15 O O18 EF2 . . . H 3 25.906 16.821 27.6 1 27.11 ? O18 EF2 202 B 1 HETATM 16 C C19 EF2 . . . H 3 24.744 18.799 29.832 1 40.31 ? C19 EF2 202 B 1 HETATM 17 C C20 EF2 . . . H 3 23.917 19.423 30.763 1 38.36 ? C20 EF2 202 B 1 HETATM 18 C C3 EF2 . . . H 3 24.764 16.683 28.256 1 24.09 ? C3 EF2 202 B 1 HETATM 19 C C4 EF2 . . . H 3 22.813 15.968 28.736 1 25.15 ? C4 EF2 202 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #