data_7PSP
#
_model_server_result.job_id            J7pYMD-_xqdbISyIheRWPw 
_model_server_result.datetime_utc      '2024-11-14 04:40:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7psp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    7PSP 
#
_exptl.entry_id    7PSP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              377.264 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R,4R)-1-(2-chloranylethanoyl)-N-(3-chlorophenyl)-4-phenyl-pyrrolidine-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7PSP 
_cell.length_a            109.54 
_cell.length_b            109.54 
_cell.length_c            89.87 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PSP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    'P 64 2 (x,y,z+1/6)' 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 104 A CYS 81 1_555 C C1 85Q . A 85Q 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale2 B SG CYS 104 B CYS 81 1_555 F C1 85Q . B 85Q 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
metalc ? metalc1 A O SER 43 A SER 20 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc2 A O GLU 46 A GLU 23 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc3 A O ASP 48 A ASP 25 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc4 A O LYS 51 A LYS 28 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc5 A OE1 GLU 56 A GLU 33 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc6 A OE2 GLU 56 A GLU 33 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc7 A OD2 ASP 86 A ASP 63 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc8 A OD1 ASN 88 A ASN 65 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc9 A OD1 ASP 90 A ASP 67 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc10 A O GLU 92 A GLU 69 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc11 A OE1 GLU 97 A GLU 74 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc12 A OE2 GLU 97 A GLU 74 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc13 D CA CA . A CA 202 1_555 I O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc14 E CA CA . A CA 203 1_555 I O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc15 B O SER 43 B SER 20 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc16 B O GLU 46 B GLU 23 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc17 B O ASP 48 B ASP 25 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc18 B O LYS 51 B LYS 28 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc19 B OE1 GLU 56 B GLU 33 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc20 B OE2 GLU 56 B GLU 33 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc21 B OD1 ASP 86 B ASP 63 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? 
metalc ? metalc22 B OD1 ASN 88 B ASN 65 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc23 B OD1 ASP 90 B ASP 67 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc24 B O GLU 92 B GLU 69 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc25 B OE1 GLU 97 B GLU 74 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc26 B OE2 GLU 97 B GLU 74 1_555 H CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
#
_chem_comp.formula           'C19 H18 Cl2 N2 O2' 
_chem_comp.formula_weight    377.264 
_chem_comp.id                85Q 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R,4R)-1-(2-chloranylethanoyl)-N-(3-chlorophenyl)-4-phenyl-pyrrolidine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 85Q doub 1 n n 
C2 C1 85Q sing 2 n n 
C2 N1 85Q sing 3 n n 
C15 C16 85Q doub 4 n y 
C15 C14 85Q sing 5 n y 
C16 C17 85Q sing 6 n y 
N2 C14 85Q sing 7 n n 
N2 C13 85Q sing 8 n n 
N1 C12 85Q sing 9 n n 
N1 C3 85Q sing 10 n n 
C12 C13 85Q sing 11 n n 
C12 C11 85Q sing 12 n n 
C14 C19 85Q doub 13 n y 
C17 C18 85Q doub 14 n y 
C13 O2 85Q doub 15 n n 
C11 C4 85Q sing 16 n n 
C3 C4 85Q sing 17 n n 
C19 C18 85Q sing 18 n y 
C18 CL1 85Q sing 19 n n 
C4 C5 85Q sing 20 n n 
C10 C5 85Q doub 21 n y 
C10 C9 85Q sing 22 n y 
C5 C6 85Q sing 23 n y 
C9 C8 85Q doub 24 n y 
C6 C7 85Q doub 25 n y 
C8 C7 85Q sing 26 n y 
C4 H1 85Q sing 27 n n 
C6 H2 85Q sing 28 n n 
C11 H3 85Q sing 29 n n 
C11 H4 85Q sing 30 n n 
C7 H5 85Q sing 31 n n 
C8 H6 85Q sing 32 n n 
C9 H7 85Q sing 33 n n 
C10 H8 85Q sing 34 n n 
C12 H9 85Q sing 35 n n 
N2 H10 85Q sing 36 n n 
C3 H11 85Q sing 37 n n 
C3 H12 85Q sing 38 n n 
C1 H13 85Q sing 39 n n 
C1 H14 85Q sing 40 n n 
C15 H16 85Q sing 41 n n 
C16 H17 85Q sing 42 n n 
C17 H18 85Q sing 43 n n 
C19 H19 85Q sing 44 n n 
C1 CL 85Q sing 45 n n 
#
_atom_sites.entry_id                     7PSP 
_atom_sites.fract_transf_matrix[1][1]    0.009129 
_atom_sites.fract_transf_matrix[1][2]    0.005271 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010541 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011127 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 85Q A 1 201 101 85Q DRG . 
D 3 CA A 1 202 1 CA CA . 
E 3 CA A 1 203 2 CA CA . 
F 2 85Q B 1 201 101 85Q DRG . 
G 3 CA B 1 202 3 CA CA . 
H 3 CA B 1 203 4 CA CA . 
I 4 HOH A 1 301 1 HOH HOH . 
I 4 HOH A 2 302 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 85Q . . . F 2 17.398 -43.622 -3.067 1 84.26 ? C4 85Q 201 B 1 
HETATM 2 C C14 85Q . . . F 2 13.601 -45.548 0.082 1 106.8 ? C14 85Q 201 B 1 
HETATM 3 C C5 85Q . . . F 2 17.648 -42.674 -4.218 1 101.01 ? C5 85Q 201 B 1 
HETATM 4 C C6 85Q . . . F 2 17.817 -41.315 -3.999 1 103.16 ? C6 85Q 201 B 1 
HETATM 5 C C11 85Q . . . F 2 16.509 -44.837 -3.361 1 99.03 ? C11 85Q 201 B 1 
HETATM 6 C C7 85Q . . . F 2 18.051 -40.449 -5.055 1 117.75 ? C7 85Q 201 B 1 
HETATM 7 C C8 85Q . . . F 2 18.121 -40.93 -6.342 1 120.8 ? C8 85Q 201 B 1 
HETATM 8 C C9 85Q . . . F 2 17.96 -42.274 -6.577 1 118.91 ? C9 85Q 201 B 1 
HETATM 9 C C10 85Q . . . F 2 17.728 -43.141 -5.521 1 95.6 ? C10 85Q 201 B 1 
HETATM 10 C C12 85Q . . . F 2 16.72 -45.673 -2.095 1 100.98 ? C12 85Q 201 B 1 
HETATM 11 C C13 85Q . . . F 2 15.856 -45.181 -0.938 1 99.09 ? C13 85Q 201 B 1 
HETATM 12 N N1 85Q . . . F 2 18.143 -45.462 -1.829 1 88.34 ? N1 85Q 201 B 1 
HETATM 13 N N2 85Q . . . F 2 14.652 -45.794 -0.837 1 110.48 ? N2 85Q 201 B 1 
HETATM 14 C C3 85Q . . . F 2 18.67 -44.26 -2.489 1 89.54 ? C3 85Q 201 B 1 
HETATM 15 C C1 85Q . . . F 2 20.236 -45.918 -0.682 1 79.5 ? C1 85Q 201 B 1 
HETATM 16 C C15 85Q . . . F 2 12.496 -46.386 0.045 1 97.69 ? C15 85Q 201 B 1 
HETATM 17 C C16 85Q . . . F 2 11.447 -46.183 0.921 1 102.82 ? C16 85Q 201 B 1 
HETATM 18 C C17 85Q . . . F 2 11.477 -45.153 1.834 1 97.51 ? C17 85Q 201 B 1 
HETATM 19 C C18 85Q . . . F 2 12.577 -44.327 1.858 1 90.1 ? C18 85Q 201 B 1 
HETATM 20 C C19 85Q . . . F 2 13.644 -44.502 0.997 1 80.97 ? C19 85Q 201 B 1 
HETATM 21 C C2 85Q . . . F 2 18.837 -46.308 -1.049 1 86.84 ? C2 85Q 201 B 1 
HETATM 22 O O1 85Q . . . F 2 18.328 -47.361 -0.679 1 81.77 ? O1 85Q 201 B 1 
HETATM 23 O O2 85Q . . . F 2 16.253 -44.311 -0.184 1 96.88 ? O2 85Q 201 B 1 
HETATM 24 CL CL1 85Q . . . F 2 12.634 -43.02 3.005 1 89.24 ? CL1 85Q 201 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           24 
#