data_7PU6 # _model_server_result.job_id VydfxfF1uTmgMbCOOseQQA _model_server_result.datetime_utc '2025-01-18 19:16:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":501}' # _entry.id 7PU6 # _exptl.entry_id 7PU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.368 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'hexyl(octoxy)phosphinic acid' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PU6 _cell.length_a 149.541 _cell.length_b 149.541 _cell.length_c 321.718 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 95 A SER 76 1_555 I P01 P8K . A P8K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.642 ? covale ? covale2 B OG SER 95 B SER 76 1_555 K P01 P8K . B P8K 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.648 ? covale ? covale3 C OG SER 95 C SER 76 1_555 L P01 P8K . C P8K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.642 ? covale ? covale4 D OG SER 95 D SER 76 1_555 M P01 P8K . D P8K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? covale ? covale5 E OG SER 95 E SER 76 1_555 N P01 P8K . E P8K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? covale ? covale6 F OG SER 95 F SER 76 1_555 O P01 P8K . F P8K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.638 ? covale ? covale7 G OG SER 95 G SER 76 1_555 P P01 P8K . G P8K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.649 ? covale ? covale8 H OG SER 95 H SER 76 1_555 Q P01 P8K . H P8K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? # _chem_comp.formula 'C14 H31 O3 P' _chem_comp.formula_weight 278.368 _chem_comp.id P8K _chem_comp.mon_nstd_flag . _chem_comp.name 'hexyl(octoxy)phosphinic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C14 P8K sing 250 n n C13 C12 P8K sing 251 n n C11 C12 P8K sing 252 n n C11 C03 P8K sing 253 n n C03 C02 P8K sing 254 n n C02 P01 P8K sing 255 n n O01 P01 P8K doub 256 n n P01 O02 P8K sing 257 n n O02 C05 P8K sing 258 n n C05 C01 P8K sing 259 n n C01 C04 P8K sing 260 n n C04 C06 P8K sing 261 n n C06 C07 P8K sing 262 n n C07 C08 P8K sing 263 n n C08 C09 P8K sing 264 n n C10 C09 P8K sing 265 n n C10 H1 P8K sing 266 n n C10 H2 P8K sing 267 n n C10 H3 P8K sing 268 n n C13 H4 P8K sing 269 n n C13 H5 P8K sing 270 n n C01 H6 P8K sing 271 n n C01 H7 P8K sing 272 n n C02 H9 P8K sing 273 n n C02 H10 P8K sing 274 n n C03 H11 P8K sing 275 n n C03 H12 P8K sing 276 n n C04 H13 P8K sing 277 n n C04 H14 P8K sing 278 n n C05 H15 P8K sing 279 n n C05 H16 P8K sing 280 n n C06 H17 P8K sing 281 n n C06 H18 P8K sing 282 n n C07 H19 P8K sing 283 n n C07 H20 P8K sing 284 n n C08 H21 P8K sing 285 n n C08 H22 P8K sing 286 n n C09 H23 P8K sing 287 n n C09 H24 P8K sing 288 n n C11 H25 P8K sing 289 n n C11 H26 P8K sing 290 n n C12 H27 P8K sing 291 n n C12 H28 P8K sing 292 n n C14 H29 P8K sing 293 n n C14 H30 P8K sing 294 n n C14 H31 P8K sing 295 n n P01 O1 P8K sing 296 n n O1 H8 P8K sing 297 n n # _atom_sites.entry_id 7PU6 _atom_sites.fract_transf_matrix[1][1] 0.006687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 P8K A 1 501 76 P8K 174 . J 3 GOL B 1 501 501 GOL GOL . K 2 P8K B 1 502 76 P8K 174 . L 2 P8K C 1 501 76 P8K 174 . M 2 P8K D 1 501 76 P8K 174 . N 2 P8K E 1 501 76 P8K 174 . O 2 P8K F 1 501 76 P8K 174 . P 2 P8K G 1 501 76 P8K 174 . Q 2 P8K H 1 501 76 P8K 174 . R 4 HOH A 1 601 9 HOH HOH . R 4 HOH A 2 602 7 HOH HOH . R 4 HOH A 3 603 8 HOH HOH . R 4 HOH A 4 604 1 HOH HOH . R 4 HOH A 5 605 3 HOH HOH . R 4 HOH A 6 606 4 HOH HOH . R 4 HOH A 7 607 83 HOH HOH . S 4 HOH B 1 601 19 HOH HOH . S 4 HOH B 2 602 16 HOH HOH . S 4 HOH B 3 603 13 HOH HOH . S 4 HOH B 4 604 17 HOH HOH . S 4 HOH B 5 605 10 HOH HOH . S 4 HOH B 6 606 78 HOH HOH . S 4 HOH B 7 607 20 HOH HOH . S 4 HOH B 8 608 6 HOH HOH . S 4 HOH B 9 609 18 HOH HOH . S 4 HOH B 10 610 15 HOH HOH . S 4 HOH B 11 611 5 HOH HOH . S 4 HOH B 12 612 12 HOH HOH . S 4 HOH B 13 613 14 HOH HOH . S 4 HOH B 14 614 11 HOH HOH . T 4 HOH C 1 601 32 HOH HOH . T 4 HOH C 2 602 29 HOH HOH . T 4 HOH C 3 603 31 HOH HOH . T 4 HOH C 4 604 30 HOH HOH . T 4 HOH C 5 605 21 HOH HOH . T 4 HOH C 6 606 26 HOH HOH . T 4 HOH C 7 607 33 HOH HOH . T 4 HOH C 8 608 27 HOH HOH . T 4 HOH C 9 609 24 HOH HOH . T 4 HOH C 10 610 25 HOH HOH . T 4 HOH C 11 611 23 HOH HOH . T 4 HOH C 12 612 22 HOH HOH . U 4 HOH D 1 601 37 HOH HOH . U 4 HOH D 2 602 44 HOH HOH . U 4 HOH D 3 603 45 HOH HOH . U 4 HOH D 4 604 41 HOH HOH . U 4 HOH D 5 605 38 HOH HOH . U 4 HOH D 6 606 71 HOH HOH . U 4 HOH D 7 607 47 HOH HOH . U 4 HOH D 8 608 46 HOH HOH . U 4 HOH D 9 609 35 HOH HOH . U 4 HOH D 10 610 40 HOH HOH . U 4 HOH D 11 611 82 HOH HOH . U 4 HOH D 12 612 36 HOH HOH . U 4 HOH D 13 613 34 HOH HOH . U 4 HOH D 14 614 39 HOH HOH . V 4 HOH E 1 601 53 HOH HOH . V 4 HOH E 2 602 68 HOH HOH . V 4 HOH E 3 603 54 HOH HOH . V 4 HOH E 4 604 57 HOH HOH . V 4 HOH E 5 605 49 HOH HOH . V 4 HOH E 6 606 50 HOH HOH . V 4 HOH E 7 607 51 HOH HOH . V 4 HOH E 8 608 56 HOH HOH . V 4 HOH E 9 609 55 HOH HOH . V 4 HOH E 10 610 48 HOH HOH . V 4 HOH E 11 611 58 HOH HOH . W 4 HOH F 1 601 2 HOH HOH . W 4 HOH F 2 602 63 HOH HOH . W 4 HOH F 3 603 66 HOH HOH . W 4 HOH F 4 604 60 HOH HOH . W 4 HOH F 5 605 64 HOH HOH . W 4 HOH F 6 606 52 HOH HOH . W 4 HOH F 7 607 59 HOH HOH . W 4 HOH F 8 608 42 HOH HOH . W 4 HOH F 9 609 65 HOH HOH . W 4 HOH F 10 610 43 HOH HOH . W 4 HOH F 11 611 67 HOH HOH . X 4 HOH G 1 601 80 HOH HOH . X 4 HOH G 2 602 69 HOH HOH . X 4 HOH G 3 603 72 HOH HOH . X 4 HOH G 4 604 70 HOH HOH . Y 4 HOH H 1 601 77 HOH HOH . Y 4 HOH H 2 602 28 HOH HOH . Y 4 HOH H 3 603 62 HOH HOH . Y 4 HOH H 4 604 79 HOH HOH . Y 4 HOH H 5 605 81 HOH HOH . Y 4 HOH H 6 606 61 HOH HOH . Y 4 HOH H 7 607 73 HOH HOH . Y 4 HOH H 8 608 76 HOH HOH . Y 4 HOH H 9 609 74 HOH HOH . Y 4 HOH H 10 610 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 P8K . . . L 2 42.304 10.962 22.601 1 62.8 ? C10 P8K 501 C 1 HETATM 2 C C13 P8K . . . L 2 56.011 15.438 23.895 1 51.45 ? C13 P8K 501 C 1 HETATM 3 P P01 P8K . . . L 2 50.602 13.744 21.139 1 41.77 ? P01 P8K 501 C 1 HETATM 4 C C01 P8K . . . L 2 48.454 10.338 21.399 1 64.8 ? C01 P8K 501 C 1 HETATM 5 O O01 P8K . . . L 2 49.742 14.513 22.074 1 36.26 ? O01 P8K 501 C 1 HETATM 6 C C02 P8K . . . L 2 52.357 13.884 21.737 1 44.87 ? C02 P8K 501 C 1 HETATM 7 O O02 P8K . . . L 2 50.131 12.169 21.014 1 53.38 ? O02 P8K 501 C 1 HETATM 8 C C03 P8K . . . L 2 52.758 15.353 21.787 1 46.28 ? C03 P8K 501 C 1 HETATM 9 C C04 P8K . . . L 2 46.947 10.587 21.242 1 60.8 ? C04 P8K 501 C 1 HETATM 10 C C05 P8K . . . L 2 49.158 11.652 21.912 1 71.14 ? C05 P8K 501 C 1 HETATM 11 C C06 P8K . . . L 2 46.431 10.095 19.862 1 68.34 ? C06 P8K 501 C 1 HETATM 12 C C07 P8K . . . L 2 44.898 9.757 19.924 1 70.25 ? C07 P8K 501 C 1 HETATM 13 C C08 P8K . . . L 2 44.347 9.853 21.387 1 69.17 ? C08 P8K 501 C 1 HETATM 14 C C09 P8K . . . L 2 42.802 9.963 21.47 1 70.18 ? C09 P8K 501 C 1 HETATM 15 C C11 P8K . . . L 2 54.252 15.5 22.054 1 47.87 ? C11 P8K 501 C 1 HETATM 16 C C12 P8K . . . L 2 54.536 15.231 23.54 1 48.15 ? C12 P8K 501 C 1 HETATM 17 C C14 P8K . . . L 2 56.183 14.992 25.388 1 55.08 ? C14 P8K 501 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 17 #