data_7PU8 # _model_server_result.job_id onvqAx1S-8u_K5HK0KSn-A _model_server_result.datetime_utc '2024-12-01 23:31:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pu8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":502}' # _entry.id 7PU8 # _exptl.entry_id 7PU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PU8 _cell.length_a 75.207 _cell.length_b 98.812 _cell.length_c 208.401 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 169 n n C1 C2 EDO sing 170 n n C1 H11 EDO sing 171 n n C1 H12 EDO sing 172 n n O1 HO1 EDO sing 173 n n C2 O2 EDO sing 174 n n C2 H21 EDO sing 175 n n C2 H22 EDO sing 176 n n O2 HO2 EDO sing 177 n n # _atom_sites.entry_id 7PU8 _atom_sites.fract_transf_matrix[1][1] 0.013297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 4R7 A 1 501 501 4R7 980 . F 3 EDO A 1 502 502 EDO EDO . G 3 EDO A 1 503 503 EDO EDO . H 2 4R7 B 1 501 501 4R7 980 . I 2 4R7 C 1 501 501 4R7 980 . J 3 EDO C 1 502 502 EDO EDO . K 2 4R7 D 1 501 501 4R7 980 . L 3 EDO D 1 502 502 EDO EDO . M 4 HOH A 1 601 208 HOH HOH . M 4 HOH A 2 602 195 HOH HOH . M 4 HOH A 3 603 246 HOH HOH . M 4 HOH A 4 604 19 HOH HOH . M 4 HOH A 5 605 192 HOH HOH . M 4 HOH A 6 606 39 HOH HOH . M 4 HOH A 7 607 30 HOH HOH . M 4 HOH A 8 608 67 HOH HOH . M 4 HOH A 9 609 196 HOH HOH . M 4 HOH A 10 610 253 HOH HOH . M 4 HOH A 11 611 49 HOH HOH . M 4 HOH A 12 612 66 HOH HOH . M 4 HOH A 13 613 230 HOH HOH . M 4 HOH A 14 614 15 HOH HOH . M 4 HOH A 15 615 14 HOH HOH . M 4 HOH A 16 616 128 HOH HOH . M 4 HOH A 17 617 201 HOH HOH . M 4 HOH A 18 618 147 HOH HOH . M 4 HOH A 19 619 22 HOH HOH . M 4 HOH A 20 620 153 HOH HOH . M 4 HOH A 21 621 101 HOH HOH . M 4 HOH A 22 622 38 HOH HOH . M 4 HOH A 23 623 199 HOH HOH . M 4 HOH A 24 624 44 HOH HOH . M 4 HOH A 25 625 214 HOH HOH . M 4 HOH A 26 626 127 HOH HOH . M 4 HOH A 27 627 52 HOH HOH . M 4 HOH A 28 628 11 HOH HOH . M 4 HOH A 29 629 62 HOH HOH . M 4 HOH A 30 630 26 HOH HOH . M 4 HOH A 31 631 241 HOH HOH . M 4 HOH A 32 632 106 HOH HOH . M 4 HOH A 33 633 121 HOH HOH . M 4 HOH A 34 634 42 HOH HOH . M 4 HOH A 35 635 86 HOH HOH . M 4 HOH A 36 636 8 HOH HOH . M 4 HOH A 37 637 125 HOH HOH . M 4 HOH A 38 638 139 HOH HOH . M 4 HOH A 39 639 85 HOH HOH . M 4 HOH A 40 640 122 HOH HOH . M 4 HOH A 41 641 12 HOH HOH . M 4 HOH A 42 642 140 HOH HOH . M 4 HOH A 43 643 89 HOH HOH . M 4 HOH A 44 644 28 HOH HOH . M 4 HOH A 45 645 173 HOH HOH . M 4 HOH A 46 646 82 HOH HOH . M 4 HOH A 47 647 129 HOH HOH . M 4 HOH A 48 648 5 HOH HOH . M 4 HOH A 49 649 41 HOH HOH . M 4 HOH A 50 650 17 HOH HOH . M 4 HOH A 51 651 142 HOH HOH . M 4 HOH A 52 652 9 HOH HOH . M 4 HOH A 53 653 240 HOH HOH . M 4 HOH A 54 654 76 HOH HOH . M 4 HOH A 55 655 163 HOH HOH . M 4 HOH A 56 656 207 HOH HOH . M 4 HOH A 57 657 72 HOH HOH . M 4 HOH A 58 658 134 HOH HOH . M 4 HOH A 59 659 95 HOH HOH . M 4 HOH A 60 660 260 HOH HOH . M 4 HOH A 61 661 58 HOH HOH . M 4 HOH A 62 662 186 HOH HOH . M 4 HOH A 63 663 107 HOH HOH . M 4 HOH A 64 664 242 HOH HOH . M 4 HOH A 65 665 45 HOH HOH . M 4 HOH A 66 666 115 HOH HOH . M 4 HOH A 67 667 105 HOH HOH . M 4 HOH A 68 668 178 HOH HOH . M 4 HOH A 69 669 112 HOH HOH . M 4 HOH A 70 670 179 HOH HOH . M 4 HOH A 71 671 271 HOH HOH . M 4 HOH A 72 672 73 HOH HOH . M 4 HOH A 73 673 149 HOH HOH . M 4 HOH A 74 674 47 HOH HOH . M 4 HOH A 75 675 71 HOH HOH . M 4 HOH A 76 676 188 HOH HOH . M 4 HOH A 77 677 81 HOH HOH . M 4 HOH A 78 678 103 HOH HOH . M 4 HOH A 79 679 255 HOH HOH . M 4 HOH A 80 680 109 HOH HOH . M 4 HOH A 81 681 54 HOH HOH . M 4 HOH A 82 682 218 HOH HOH . M 4 HOH A 83 683 145 HOH HOH . M 4 HOH A 84 684 265 HOH HOH . M 4 HOH A 85 685 221 HOH HOH . M 4 HOH A 86 686 80 HOH HOH . M 4 HOH A 87 687 251 HOH HOH . M 4 HOH A 88 688 117 HOH HOH . M 4 HOH A 89 689 226 HOH HOH . M 4 HOH A 90 690 266 HOH HOH . M 4 HOH A 91 691 275 HOH HOH . M 4 HOH A 92 692 87 HOH HOH . M 4 HOH A 93 693 77 HOH HOH . N 4 HOH B 1 601 231 HOH HOH . N 4 HOH B 2 602 23 HOH HOH . N 4 HOH B 3 603 193 HOH HOH . N 4 HOH B 4 604 120 HOH HOH . N 4 HOH B 5 605 157 HOH HOH . N 4 HOH B 6 606 200 HOH HOH . N 4 HOH B 7 607 83 HOH HOH . N 4 HOH B 8 608 16 HOH HOH . N 4 HOH B 9 609 152 HOH HOH . N 4 HOH B 10 610 46 HOH HOH . N 4 HOH B 11 611 263 HOH HOH . N 4 HOH B 12 612 10 HOH HOH . N 4 HOH B 13 613 124 HOH HOH . N 4 HOH B 14 614 172 HOH HOH . N 4 HOH B 15 615 7 HOH HOH . N 4 HOH B 16 616 189 HOH HOH . N 4 HOH B 17 617 118 HOH HOH . N 4 HOH B 18 618 29 HOH HOH . N 4 HOH B 19 619 88 HOH HOH . N 4 HOH B 20 620 285 HOH HOH . N 4 HOH B 21 621 161 HOH HOH . N 4 HOH B 22 622 216 HOH HOH . N 4 HOH B 23 623 130 HOH HOH . N 4 HOH B 24 624 154 HOH HOH . N 4 HOH B 25 625 169 HOH HOH . N 4 HOH B 26 626 91 HOH HOH . N 4 HOH B 27 627 1 HOH HOH . N 4 HOH B 28 628 261 HOH HOH . N 4 HOH B 29 629 37 HOH HOH . N 4 HOH B 30 630 164 HOH HOH . N 4 HOH B 31 631 131 HOH HOH . N 4 HOH B 32 632 170 HOH HOH . N 4 HOH B 33 633 166 HOH HOH . N 4 HOH B 34 634 96 HOH HOH . N 4 HOH B 35 635 40 HOH HOH . N 4 HOH B 36 636 13 HOH HOH . N 4 HOH B 37 637 138 HOH HOH . N 4 HOH B 38 638 4 HOH HOH . N 4 HOH B 39 639 177 HOH HOH . N 4 HOH B 40 640 79 HOH HOH . N 4 HOH B 41 641 252 HOH HOH . N 4 HOH B 42 642 48 HOH HOH . N 4 HOH B 43 643 175 HOH HOH . N 4 HOH B 44 644 215 HOH HOH . N 4 HOH B 45 645 270 HOH HOH . N 4 HOH B 46 646 176 HOH HOH . N 4 HOH B 47 647 167 HOH HOH . N 4 HOH B 48 648 220 HOH HOH . N 4 HOH B 49 649 248 HOH HOH . N 4 HOH B 50 650 227 HOH HOH . N 4 HOH B 51 651 150 HOH HOH . N 4 HOH B 52 652 274 HOH HOH . N 4 HOH B 53 653 262 HOH HOH . N 4 HOH B 54 654 57 HOH HOH . N 4 HOH B 55 655 55 HOH HOH . N 4 HOH B 56 656 141 HOH HOH . N 4 HOH B 57 657 279 HOH HOH . N 4 HOH B 58 658 99 HOH HOH . N 4 HOH B 59 659 50 HOH HOH . N 4 HOH B 60 660 259 HOH HOH . N 4 HOH B 61 661 94 HOH HOH . N 4 HOH B 62 662 104 HOH HOH . N 4 HOH B 63 663 278 HOH HOH . N 4 HOH B 64 664 61 HOH HOH . N 4 HOH B 65 665 102 HOH HOH . N 4 HOH B 66 666 217 HOH HOH . N 4 HOH B 67 667 243 HOH HOH . N 4 HOH B 68 668 280 HOH HOH . N 4 HOH B 69 669 137 HOH HOH . N 4 HOH B 70 670 111 HOH HOH . N 4 HOH B 71 671 65 HOH HOH . N 4 HOH B 72 672 281 HOH HOH . O 4 HOH C 1 601 198 HOH HOH . O 4 HOH C 2 602 206 HOH HOH . O 4 HOH C 3 603 203 HOH HOH . O 4 HOH C 4 604 98 HOH HOH . O 4 HOH C 5 605 219 HOH HOH . O 4 HOH C 6 606 194 HOH HOH . O 4 HOH C 7 607 68 HOH HOH . O 4 HOH C 8 608 18 HOH HOH . O 4 HOH C 9 609 202 HOH HOH . O 4 HOH C 10 610 53 HOH HOH . O 4 HOH C 11 611 268 HOH HOH . O 4 HOH C 12 612 235 HOH HOH . O 4 HOH C 13 613 33 HOH HOH . O 4 HOH C 14 614 286 HOH HOH . O 4 HOH C 15 615 34 HOH HOH . O 4 HOH C 16 616 276 HOH HOH . O 4 HOH C 17 617 70 HOH HOH . O 4 HOH C 18 618 184 HOH HOH . O 4 HOH C 19 619 237 HOH HOH . O 4 HOH C 20 620 155 HOH HOH . O 4 HOH C 21 621 59 HOH HOH . O 4 HOH C 22 622 165 HOH HOH . O 4 HOH C 23 623 27 HOH HOH . O 4 HOH C 24 624 119 HOH HOH . O 4 HOH C 25 625 21 HOH HOH . O 4 HOH C 26 626 256 HOH HOH . O 4 HOH C 27 627 171 HOH HOH . O 4 HOH C 28 628 20 HOH HOH . O 4 HOH C 29 629 51 HOH HOH . O 4 HOH C 30 630 113 HOH HOH . O 4 HOH C 31 631 69 HOH HOH . O 4 HOH C 32 632 74 HOH HOH . O 4 HOH C 33 633 32 HOH HOH . O 4 HOH C 34 634 156 HOH HOH . O 4 HOH C 35 635 148 HOH HOH . O 4 HOH C 36 636 249 HOH HOH . O 4 HOH C 37 637 24 HOH HOH . O 4 HOH C 38 638 209 HOH HOH . O 4 HOH C 39 639 116 HOH HOH . O 4 HOH C 40 640 168 HOH HOH . O 4 HOH C 41 641 25 HOH HOH . O 4 HOH C 42 642 238 HOH HOH . O 4 HOH C 43 643 236 HOH HOH . O 4 HOH C 44 644 43 HOH HOH . O 4 HOH C 45 645 108 HOH HOH . O 4 HOH C 46 646 234 HOH HOH . O 4 HOH C 47 647 283 HOH HOH . O 4 HOH C 48 648 144 HOH HOH . O 4 HOH C 49 649 56 HOH HOH . O 4 HOH C 50 650 222 HOH HOH . O 4 HOH C 51 651 159 HOH HOH . O 4 HOH C 52 652 75 HOH HOH . O 4 HOH C 53 653 272 HOH HOH . O 4 HOH C 54 654 180 HOH HOH . O 4 HOH C 55 655 182 HOH HOH . O 4 HOH C 56 656 146 HOH HOH . O 4 HOH C 57 657 64 HOH HOH . O 4 HOH C 58 658 284 HOH HOH . O 4 HOH C 59 659 174 HOH HOH . O 4 HOH C 60 660 93 HOH HOH . O 4 HOH C 61 661 269 HOH HOH . O 4 HOH C 62 662 224 HOH HOH . O 4 HOH C 63 663 245 HOH HOH . O 4 HOH C 64 664 187 HOH HOH . O 4 HOH C 65 665 254 HOH HOH . O 4 HOH C 66 666 229 HOH HOH . O 4 HOH C 67 667 277 HOH HOH . O 4 HOH C 68 668 257 HOH HOH . O 4 HOH C 69 669 136 HOH HOH . O 4 HOH C 70 670 126 HOH HOH . O 4 HOH C 71 671 133 HOH HOH . O 4 HOH C 72 672 247 HOH HOH . O 4 HOH C 73 673 244 HOH HOH . P 4 HOH D 1 601 223 HOH HOH . P 4 HOH D 2 602 6 HOH HOH . P 4 HOH D 3 603 63 HOH HOH . P 4 HOH D 4 604 35 HOH HOH . P 4 HOH D 5 605 97 HOH HOH . P 4 HOH D 6 606 114 HOH HOH . P 4 HOH D 7 607 135 HOH HOH . P 4 HOH D 8 608 225 HOH HOH . P 4 HOH D 9 609 2 HOH HOH . P 4 HOH D 10 610 191 HOH HOH . P 4 HOH D 11 611 232 HOH HOH . P 4 HOH D 12 612 158 HOH HOH . P 4 HOH D 13 613 92 HOH HOH . P 4 HOH D 14 614 151 HOH HOH . P 4 HOH D 15 615 205 HOH HOH . P 4 HOH D 16 616 60 HOH HOH . P 4 HOH D 17 617 123 HOH HOH . P 4 HOH D 18 618 160 HOH HOH . P 4 HOH D 19 619 204 HOH HOH . P 4 HOH D 20 620 197 HOH HOH . P 4 HOH D 21 621 132 HOH HOH . P 4 HOH D 22 622 84 HOH HOH . P 4 HOH D 23 623 162 HOH HOH . P 4 HOH D 24 624 36 HOH HOH . P 4 HOH D 25 625 3 HOH HOH . P 4 HOH D 26 626 228 HOH HOH . P 4 HOH D 27 627 31 HOH HOH . P 4 HOH D 28 628 181 HOH HOH . P 4 HOH D 29 629 267 HOH HOH . P 4 HOH D 30 630 250 HOH HOH . P 4 HOH D 31 631 78 HOH HOH . P 4 HOH D 32 632 183 HOH HOH . P 4 HOH D 33 633 273 HOH HOH . P 4 HOH D 34 634 233 HOH HOH . P 4 HOH D 35 635 264 HOH HOH . P 4 HOH D 36 636 100 HOH HOH . P 4 HOH D 37 637 143 HOH HOH . P 4 HOH D 38 638 185 HOH HOH . P 4 HOH D 39 639 90 HOH HOH . P 4 HOH D 40 640 110 HOH HOH . P 4 HOH D 41 641 210 HOH HOH . P 4 HOH D 42 642 213 HOH HOH . P 4 HOH D 43 643 212 HOH HOH . P 4 HOH D 44 644 282 HOH HOH . P 4 HOH D 45 645 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 3 44.036 25.86 188.066 1 70.99 ? C1 EDO 502 D 1 HETATM 2 O O1 EDO . . . L 3 44.567 24.786 187.225 1 73.14 ? O1 EDO 502 D 1 HETATM 3 C C2 EDO . . . L 3 42.666 26.334 187.524 1 73.84 ? C2 EDO 502 D 1 HETATM 4 O O2 EDO . . . L 3 41.641 25.322 187.459 1 72.99 ? O2 EDO 502 D 1 HETATM 5 H H11 EDO . . . L 3 44.736 26.698 188.077 1 85.49 ? H11 EDO 502 D 1 HETATM 6 H H12 EDO . . . L 3 43.921 25.501 189.091 1 85.49 ? H12 EDO 502 D 1 HETATM 7 H HO1 EDO . . . L 3 45.422 24.498 187.572 1 88.08 ? HO1 EDO 502 D 1 HETATM 8 H H21 EDO . . . L 3 42.812 26.744 186.522 1 88.92 ? H21 EDO 502 D 1 HETATM 9 H H22 EDO . . . L 3 42.308 27.15 188.154 1 88.92 ? H22 EDO 502 D 1 HETATM 10 H HO2 EDO . . . L 3 40.827 25.71 187.11 1 87.9 ? HO2 EDO 502 D 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #