data_7PU9 # _model_server_result.job_id UtF18JpW794uL1zwo-Z4Ew _model_server_result.datetime_utc '2024-11-22 00:37:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pu9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7PU9 # _exptl.entry_id 7PU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 652.245 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[bis(4-chlorophenyl)methyl]-3-[(2~{R})-2-(2,4-dichlorophenyl)-2-[(2,4-dichlorophenyl)methoxy]ethyl]imidazole _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7PU9 _cell.length_a 39.351 _cell.length_b 39.351 _cell.length_c 336.92 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 20 A ASP 20 1_555 G CA CA . A CA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc2 A OD1 ASP 22 A ASP 22 1_555 G CA CA . A CA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc3 A OD1 ASP 24 A ASP 24 1_555 G CA CA . A CA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc4 A O THR 26 A THR 26 1_555 G CA CA . A CA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc5 A OE1 GLU 31 A GLU 31 1_555 G CA CA . A CA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc6 A OE2 GLU 31 A GLU 31 1_555 G CA CA . A CA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 A OD1 ASP 56 A ASP 56 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc8 A OD1 ASP 58 A ASP 58 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc9 A OD1 ASN 60 A ASN 60 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc10 A O THR 62 A THR 62 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc11 A OE1 GLU 67 A GLU 67 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc12 A OE2 GLU 67 A GLU 67 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc13 A OD1 ASP 93 A ASP 93 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc14 A OD1 ASP 95 A ASP 95 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc15 A OD1 ASN 97 A ASN 97 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc16 A O TYR 99 A TYR 99 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc17 A OE1 GLU 104 A GLU 104 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc18 A OE2 GLU 104 A GLU 104 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc19 A OD1 ASP 129 A ASP 129 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc20 A OD1 ASP 131 A ASP 131 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc21 A OD1 ASP 133 A ASP 133 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc22 A O GLN 135 A GLN 135 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc23 A OE1 GLU 140 A GLU 140 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc24 A OE2 GLU 140 A GLU 140 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc25 D CA CA . A CA 203 1_555 H O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? # _chem_comp.formula 'C31 H23 Cl6 N2 O 1' _chem_comp.formula_weight 652.245 _chem_comp.id 85H _chem_comp.mon_nstd_flag . _chem_comp.name 1-[bis(4-chlorophenyl)methyl]-3-[(2~{R})-2-(2,4-dichlorophenyl)-2-[(2,4-dichlorophenyl)methoxy]ethyl]imidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL2 C21 85H sing 1 n n C21 C20 85H doub 2 n y C21 C22 85H sing 3 n y C20 C19 85H sing 4 n y C22 C23 85H doub 5 n y C19 C18 85H doub 6 n y C23 C18 85H sing 7 n y C23 CL3 85H sing 8 n n CL C 85H sing 9 n n C18 C17 85H sing 10 n n C1 C 85H doub 11 n y C1 C2 85H sing 12 n y C C5 85H sing 13 n y C2 C3 85H doub 14 n y C17 O 85H sing 15 n n C5 C4 85H doub 16 n y C3 C4 85H sing 17 n y C3 C6 85H sing 18 n n O C16 85H sing 19 n n C6 C7 85H sing 20 n n C6 N 85H sing 21 n n C30 N 85H doub 22 n y C30 N1 85H sing 23 n y C16 C15 85H sing 24 n n C16 C24 85H sing 25 n n C7 C12 85H doub 26 n y C7 C8 85H sing 27 n y N C13 85H sing 28 n y C15 N1 85H sing 29 n n C12 C11 85H sing 30 n y C25 C24 85H doub 31 n y C25 C26 85H sing 32 n y C8 C9 85H doub 33 n y N1 C14 85H sing 34 n y C24 C29 85H sing 35 n y C26 C27 85H doub 36 n y C11 C10 85H doub 37 n y C13 C14 85H doub 38 n y C9 C10 85H sing 39 n y C29 CL5 85H sing 40 n n C29 C28 85H doub 41 n y C10 CL1 85H sing 42 n n C27 C28 85H sing 43 n y C27 CL4 85H sing 44 n n C8 H1 85H sing 45 n n C9 H2 85H sing 46 n n C1 H3 85H sing 47 n n C5 H4 85H sing 48 n n C6 H5 85H sing 49 n n C4 H6 85H sing 50 n n C2 H7 85H sing 51 n n C11 H8 85H sing 52 n n C12 H9 85H sing 53 n n C13 H10 85H sing 54 n n C14 H11 85H sing 55 n n C30 H12 85H sing 56 n n C15 H13 85H sing 57 n n C15 H14 85H sing 58 n n C16 H15 85H sing 59 n n C25 H16 85H sing 60 n n C26 H17 85H sing 61 n n C28 H18 85H sing 62 n n C17 H19 85H sing 63 n n C17 H20 85H sing 64 n n C19 H21 85H sing 65 n n C20 H22 85H sing 66 n n C22 H23 85H sing 67 n n # _atom_sites.entry_id 7PU9 _atom_sites.fract_transf_matrix[1][1] 0.025412 _atom_sites.fract_transf_matrix[1][2] 0.014672 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 85H A 1 201 201 85H XXX . C 2 85H A 1 202 301 85H XXX . D 3 CA A 1 203 3 CA CA . E 3 CA A 1 204 4 CA CA . F 3 CA A 1 205 1 CA CA . G 3 CA A 1 206 6 CA CA . H 4 HOH A 1 301 31 HOH HOH . H 4 HOH A 2 302 2 HOH HOH . H 4 HOH A 3 303 33 HOH HOH . H 4 HOH A 4 304 37 HOH HOH . H 4 HOH A 5 305 3 HOH HOH . H 4 HOH A 6 306 34 HOH HOH . H 4 HOH A 7 307 19 HOH HOH . H 4 HOH A 8 308 8 HOH HOH . H 4 HOH A 9 309 38 HOH HOH . H 4 HOH A 10 310 15 HOH HOH . H 4 HOH A 11 311 6 HOH HOH . H 4 HOH A 12 312 1 HOH HOH . H 4 HOH A 13 313 18 HOH HOH . H 4 HOH A 14 314 22 HOH HOH . H 4 HOH A 15 315 13 HOH HOH . H 4 HOH A 16 316 24 HOH HOH . H 4 HOH A 17 317 5 HOH HOH . H 4 HOH A 18 318 9 HOH HOH . H 4 HOH A 19 319 36 HOH HOH . H 4 HOH A 20 320 4 HOH HOH . H 4 HOH A 21 321 16 HOH HOH . H 4 HOH A 22 322 41 HOH HOH . H 4 HOH A 23 323 14 HOH HOH . H 4 HOH A 24 324 27 HOH HOH . H 4 HOH A 25 325 17 HOH HOH . H 4 HOH A 26 326 7 HOH HOH . H 4 HOH A 27 327 30 HOH HOH . H 4 HOH A 28 328 10 HOH HOH . H 4 HOH A 29 329 32 HOH HOH . H 4 HOH A 30 330 40 HOH HOH . H 4 HOH A 31 331 11 HOH HOH . H 4 HOH A 32 332 29 HOH HOH . H 4 HOH A 33 333 39 HOH HOH . H 4 HOH A 34 334 35 HOH HOH . H 4 HOH A 35 335 12 HOH HOH . H 4 HOH A 36 336 28 HOH HOH . H 4 HOH A 37 337 26 HOH HOH . H 4 HOH A 38 338 21 HOH HOH . H 4 HOH A 39 339 25 HOH HOH . H 4 HOH A 40 340 23 HOH HOH . H 4 HOH A 41 341 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 85H . . . B 2 -5.712 9.445 13.885 1 54.24 ? N1 85H 201 A 1 HETATM 2 C C7 85H . . . B 2 -3.452 13.444 13.358 1 56.08 ? C7 85H 201 A 1 HETATM 3 C C8 85H . . . B 2 -3.956 14.639 13.85 1 56.45 ? C8 85H 201 A 1 HETATM 4 C C9 85H . . . B 2 -3.238 15.394 14.76 1 57.13 ? C9 85H 201 A 1 HETATM 5 C C1 85H . . . B 2 -6.419 14.039 9.796 1 54.85 ? C1 85H 201 A 1 HETATM 6 C C5 85H . . . B 2 -7.817 13.728 11.716 1 55.26 ? C5 85H 201 A 1 HETATM 7 C C6 85H . . . B 2 -4.323 12.48 12.566 1 55.39 ? C6 85H 201 A 1 HETATM 8 C C4 85H . . . B 2 -6.734 13.226 12.413 1 55.31 ? C4 85H 201 A 1 HETATM 9 C C3 85H . . . B 2 -5.483 13.128 11.823 1 55.26 ? C3 85H 201 A 1 HETATM 10 C C2 85H . . . B 2 -5.34 13.547 10.508 1 55.01 ? C2 85H 201 A 1 HETATM 11 CL CL1 85H . . . B 2 -1.234 15.695 16.549 1 58.53 ? CL1 85H 201 A 1 HETATM 12 C C10 85H . . . B 2 -2.004 14.939 15.179 1 57.67 ? C10 85H 201 A 1 HETATM 13 C C11 85H . . . B 2 -1.444 13.806 14.641 1 57.04 ? C11 85H 201 A 1 HETATM 14 C C12 85H . . . B 2 -2.175 13.062 13.735 1 56.49 ? C12 85H 201 A 1 HETATM 15 C C 85H . . . B 2 -7.643 14.139 10.418 1 54.78 ? C 85H 201 A 1 HETATM 16 CL CL 85H . . . B 2 -8.966 14.897 9.584 1 54.45 ? CL 85H 201 A 1 HETATM 17 N N 85H . . . B 2 -4.846 11.368 13.437 1 54.63 ? N 85H 201 A 1 HETATM 18 C C13 85H . . . B 2 -5.235 11.397 14.759 1 54.3 ? C13 85H 201 A 1 HETATM 19 C C14 85H . . . B 2 -5.786 10.2 15.035 1 53.74 ? C14 85H 201 A 1 HETATM 20 C C30 85H . . . B 2 -5.124 10.165 12.943 1 54.41 ? C30 85H 201 A 1 HETATM 21 C C15 85H . . . B 2 -6.197 8.072 13.724 1 54.31 ? C15 85H 201 A 1 HETATM 22 C C16 85H . . . B 2 -7.559 8.062 13.047 1 54.32 ? C16 85H 201 A 1 HETATM 23 C C24 85H . . . B 2 -8.63 8.619 13.956 1 54.55 ? C24 85H 201 A 1 HETATM 24 C C25 85H . . . B 2 -9.089 9.925 13.793 1 54.49 ? C25 85H 201 A 1 HETATM 25 C C26 85H . . . B 2 -10.126 10.433 14.549 1 54.53 ? C26 85H 201 A 1 HETATM 26 C C27 85H . . . B 2 -10.719 9.629 15.486 1 55.04 ? C27 85H 201 A 1 HETATM 27 CL CL4 85H . . . B 2 -12.097 10.222 16.368 1 55.7 ? CL4 85H 201 A 1 HETATM 28 C C28 85H . . . B 2 -10.287 8.338 15.708 1 54.97 ? C28 85H 201 A 1 HETATM 29 C C29 85H . . . B 2 -9.249 7.85 14.938 1 55.28 ? C29 85H 201 A 1 HETATM 30 CL CL5 85H . . . B 2 -8.736 6.213 15.218 1 56.47 ? CL5 85H 201 A 1 HETATM 31 O O 85H . . . B 2 -7.412 8.848 11.858 1 54.26 ? O 85H 201 A 1 HETATM 32 C C17 85H . . . B 2 -8.3 8.464 10.81 1 53.92 ? C17 85H 201 A 1 HETATM 33 C C18 85H . . . B 2 -8.135 9.413 9.652 1 53.48 ? C18 85H 201 A 1 HETATM 34 C C19 85H . . . B 2 -7.14 9.201 8.698 1 53.66 ? C19 85H 201 A 1 HETATM 35 C C20 85H . . . B 2 -6.956 10.07 7.636 1 53.46 ? C20 85H 201 A 1 HETATM 36 C C21 85H . . . B 2 -7.789 11.154 7.511 1 53.41 ? C21 85H 201 A 1 HETATM 37 CL CL2 85H . . . B 2 -7.658 12.176 6.109 1 53.99 ? CL2 85H 201 A 1 HETATM 38 C C22 85H . . . B 2 -8.787 11.404 8.426 1 52.93 ? C22 85H 201 A 1 HETATM 39 C C23 85H . . . B 2 -8.945 10.532 9.483 1 52.94 ? C23 85H 201 A 1 HETATM 40 CL CL3 85H . . . B 2 -10.201 10.876 10.634 1 52.84 ? CL3 85H 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #