data_7PUT # _model_server_result.job_id snS4jA2SvSymplyXHis6pw _model_server_result.datetime_utc '2024-11-22 04:58:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7put # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":603}' # _entry.id 7PUT # _exptl.entry_id 7PUT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PUT _cell.length_a 147.39 _cell.length_b 260.287 _cell.length_c 130.333 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PUT _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,L,M,O,P 1 1 C,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -147.39 0 -65.1665 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 K N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 153 A CYS 153 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? disulf ? disulf2 B SG CYS 153 B CYS 153 1_555 B SG CYS 158 B CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf3 C SG CYS 153 C CYS 153 1_555 C SG CYS 158 C CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? covale ? covale1 A C GLN 344 A GLN 344 1_555 A N 2CO 345 A 2CO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C 2CO 345 A 2CO 345 1_555 A N VAL 346 A VAL 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 B C GLN 344 B GLN 344 1_555 B N 2CO 345 B 2CO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B C 2CO 345 B 2CO 345 1_555 B N VAL 346 B VAL 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 392 n n C1 H11 MPD sing 393 n n C1 H12 MPD sing 394 n n C1 H13 MPD sing 395 n n C2 O2 MPD sing 396 n n C2 CM MPD sing 397 n n C2 C3 MPD sing 398 n n O2 HO2 MPD sing 399 n n CM HM1 MPD sing 400 n n CM HM2 MPD sing 401 n n CM HM3 MPD sing 402 n n C3 C4 MPD sing 403 n n C3 H31 MPD sing 404 n n C3 H32 MPD sing 405 n n C4 O4 MPD sing 406 n n C4 C5 MPD sing 407 n n C4 H4 MPD sing 408 n n O4 HO4 MPD sing 409 n n C5 H51 MPD sing 410 n n C5 H52 MPD sing 411 n n C5 H53 MPD sing 412 n n # _atom_sites.entry_id 7PUT _atom_sites.fract_transf_matrix[1][1] 0.006785 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 FAD A 1 601 699 FAD FAD . E 4 MPD A 1 602 1 MPD MPD . F 4 MPD A 1 603 3 MPD MPD . G 4 MPD A 1 604 4 MPD MPD . H 4 MPD A 1 605 7 MPD MPD . I 5 ATR A 1 606 1 ATR ATR . J 3 FAD B 1 601 699 FAD FAD . K 4 MPD B 1 602 2 MPD MPD . L 4 MPD B 1 603 5 MPD MPD . M 4 MPD B 1 604 6 MPD MPD . N 3 FAD C 1 601 699 FAD FAD . O 6 HOH A 1 701 2 HOH HOH . O 6 HOH A 2 702 210 HOH HOH . O 6 HOH A 3 703 194 HOH HOH . O 6 HOH A 4 704 186 HOH HOH . O 6 HOH A 5 705 188 HOH HOH . O 6 HOH A 6 706 176 HOH HOH . P 6 HOH B 1 701 223 HOH HOH . P 6 HOH B 2 702 39 HOH HOH . P 6 HOH B 3 703 4 HOH HOH . P 6 HOH B 4 704 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . L 4 -22.37 -71.94 0.072 1 117.2 ? C1 MPD 603 B 1 HETATM 2 C C2 MPD . . . L 4 -21.905 -70.53 -0.273 1 113.99 ? C2 MPD 603 B 1 HETATM 3 O O2 MPD . . . L 4 -20.901 -70.176 0.685 1 103.7 ? O2 MPD 603 B 1 HETATM 4 C CM MPD . . . L 4 -23.045 -69.526 -0.143 1 113.7 ? CM MPD 603 B 1 HETATM 5 C C3 MPD . . . L 4 -21.242 -70.454 -1.655 1 104.88 ? C3 MPD 603 B 1 HETATM 6 C C4 MPD . . . L 4 -20.124 -71.453 -1.914 1 117.37 ? C4 MPD 603 B 1 HETATM 7 O O4 MPD . . . L 4 -19.702 -71.286 -3.261 1 118.36 ? O4 MPD 603 B 1 HETATM 8 C C5 MPD . . . L 4 -18.899 -71.399 -1.036 1 117.18 ? C5 MPD 603 B 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #