data_7PV1 # _model_server_result.job_id IZVKE8Dh0kJayRpZPF_DBg _model_server_result.datetime_utc '2024-12-26 16:39:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 7PV1 # _exptl.entry_id 7PV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.72 _cell.angle_gamma 90 _cell.entry_id 7PV1 _cell.length_a 58.197 _cell.length_b 85.371 _cell.length_c 61.497 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,H,I 1 1 C,D,G,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 117 A CYS 117 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 117 B CYS 117 1_555 B SG CYS 128 B CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 117 C CYS 117 1_555 C SG CYS 128 C CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 D SG CYS 117 D CYS 117 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 237 n n O1 HO1 PG4 sing 238 n n C1 C2 PG4 sing 239 n n C1 H11 PG4 sing 240 n n C1 H12 PG4 sing 241 n n C2 O2 PG4 sing 242 n n C2 H21 PG4 sing 243 n n C2 H22 PG4 sing 244 n n O2 C3 PG4 sing 245 n n C3 C4 PG4 sing 246 n n C3 H31 PG4 sing 247 n n C3 H32 PG4 sing 248 n n C4 O3 PG4 sing 249 n n C4 H41 PG4 sing 250 n n C4 H42 PG4 sing 251 n n O3 C5 PG4 sing 252 n n C5 C6 PG4 sing 253 n n C5 H51 PG4 sing 254 n n C5 H52 PG4 sing 255 n n C6 O4 PG4 sing 256 n n C6 H61 PG4 sing 257 n n C6 H62 PG4 sing 258 n n O4 C7 PG4 sing 259 n n C7 C8 PG4 sing 260 n n C7 H71 PG4 sing 261 n n C7 H72 PG4 sing 262 n n C8 O5 PG4 sing 263 n n C8 H81 PG4 sing 264 n n C8 H82 PG4 sing 265 n n O5 HO5 PG4 sing 266 n n # _atom_sites.entry_id 7PV1 _atom_sites.fract_transf_matrix[1][1] 0.017183 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003565 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PG4 A 1 201 2 PG4 PG4 . F 2 PG4 B 1 201 1 PG4 PG4 . G 2 PG4 D 1 201 3 PG4 PG4 . H 3 HOH A 1 301 2 HOH HOH . I 3 HOH B 1 301 6 HOH HOH . I 3 HOH B 2 302 4 HOH HOH . I 3 HOH B 3 303 8 HOH HOH . J 3 HOH C 1 201 7 HOH HOH . J 3 HOH C 2 202 1 HOH HOH . J 3 HOH C 3 203 5 HOH HOH . J 3 HOH C 4 204 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . G 2 36.185 75.454 66.488 1 85.06 ? O1 PG4 201 D 1 HETATM 2 C C1 PG4 . . . G 2 35.413 74.598 65.692 1 85.95 ? C1 PG4 201 D 1 HETATM 3 C C2 PG4 . . . G 2 35.223 75.237 64.32 1 86.43 ? C2 PG4 201 D 1 HETATM 4 O O2 PG4 . . . G 2 36.47 75.602 63.804 1 87.5 ? O2 PG4 201 D 1 HETATM 5 C C3 PG4 . . . G 2 36.968 74.704 62.856 1 91.11 ? C3 PG4 201 D 1 HETATM 6 C C4 PG4 . . . G 2 37.564 75.48 61.687 1 94.37 ? C4 PG4 201 D 1 HETATM 7 O O3 PG4 . . . G 2 38.91 75.136 61.54 1 97.64 ? O3 PG4 201 D 1 HETATM 8 C C5 PG4 . . . G 2 39.604 76.044 60.735 1 101.78 ? C5 PG4 201 D 1 HETATM 9 C C6 PG4 . . . G 2 40.798 75.353 60.083 1 104.96 ? C6 PG4 201 D 1 HETATM 10 O O4 PG4 . . . G 2 40.486 74.012 59.829 1 104.56 ? O4 PG4 201 D 1 HETATM 11 C C7 PG4 . . . G 2 41.369 73.394 58.937 1 101.11 ? C7 PG4 201 D 1 HETATM 12 C C8 PG4 . . . G 2 41.581 71.944 59.362 1 95.94 ? C8 PG4 201 D 1 HETATM 13 O O5 PG4 . . . G 2 42.297 71.27 58.364 1 91.74 ? O5 PG4 201 D 1 HETATM 14 H HO1 PG4 . . . G 2 36.236 75.139 67.276 1 102.09 ? HO1 PG4 201 D 1 HETATM 15 H H11 PG4 . . . G 2 35.868 73.747 65.595 1 103.16 ? H11 PG4 201 D 1 HETATM 16 H H12 PG4 . . . G 2 34.549 74.458 66.109 1 103.16 ? H12 PG4 201 D 1 HETATM 17 H H21 PG4 . . . G 2 34.799 74.601 63.722 1 103.74 ? H21 PG4 201 D 1 HETATM 18 H H22 PG4 . . . G 2 34.664 76.025 64.403 1 103.74 ? H22 PG4 201 D 1 HETATM 19 H H31 PG4 . . . G 2 37.655 74.153 63.263 1 109.36 ? H31 PG4 201 D 1 HETATM 20 H H32 PG4 . . . G 2 36.248 74.139 62.536 1 109.36 ? H32 PG4 201 D 1 HETATM 21 H H41 PG4 . . . G 2 37.083 75.259 60.873 1 113.26 ? H41 PG4 201 D 1 HETATM 22 H H42 PG4 . . . G 2 37.489 76.431 61.858 1 113.26 ? H42 PG4 201 D 1 HETATM 23 H H51 PG4 . . . G 2 39.011 76.381 60.046 1 122.16 ? H51 PG4 201 D 1 HETATM 24 H H52 PG4 . . . G 2 39.918 76.783 61.28 1 122.16 ? H52 PG4 201 D 1 HETATM 25 H H61 PG4 . . . G 2 41.011 75.798 59.247 1 125.97 ? H61 PG4 201 D 1 HETATM 26 H H62 PG4 . . . G 2 41.562 75.399 60.678 1 125.97 ? H62 PG4 201 D 1 HETATM 27 H H71 PG4 . . . G 2 40.995 73.418 58.042 1 121.35 ? H71 PG4 201 D 1 HETATM 28 H H72 PG4 . . . G 2 42.218 73.862 58.945 1 121.35 ? H72 PG4 201 D 1 HETATM 29 H H81 PG4 . . . G 2 42.082 71.92 60.192 1 115.15 ? H81 PG4 201 D 1 HETATM 30 H H82 PG4 . . . G 2 40.721 71.515 59.49 1 115.15 ? H82 PG4 201 D 1 HETATM 31 H HO5 PG4 . . . G 2 42.322 70.44 58.546 1 110.11 ? HO5 PG4 201 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #