data_7PV6 # _model_server_result.job_id -AdgkWzsfJnfDU6DF03ymw _model_server_result.datetime_utc '2024-11-29 19:28:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":504}' # _entry.id 7PV6 # _exptl.entry_id 7PV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PV6 _cell.length_a 75 _cell.length_b 99.519 _cell.length_c 208.46 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,V,W 1 1 A,B,E,F,G,H,I,J,K,L,M,N,O,V,W 1 2 C,D,P,Q,R,S,T,U,X,Y 2 1 C,D,P,Q,R,S,T,U,X,Y 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 75 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 Q N N ? 3 R N N ? 3 S N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7PV6 _atom_sites.fract_transf_matrix[1][1] 0.013333 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LRZ A 1 501 1 LRZ GCD . F 3 EDO A 1 502 3 EDO EDO . G 3 EDO A 1 503 8 EDO EDO . H 3 EDO A 1 504 9 EDO EDO . I 3 EDO A 1 505 12 EDO EDO . J 3 EDO A 1 506 14 EDO EDO . K 3 EDO A 1 507 15 EDO EDO . L 2 LRZ B 1 501 2 LRZ GCD . M 3 EDO B 1 502 4 EDO EDO . N 3 EDO B 1 503 10 EDO EDO . O 3 EDO B 1 504 13 EDO EDO . P 2 LRZ C 1 501 3 LRZ GCD . Q 3 EDO C 1 502 2 EDO EDO . R 3 EDO C 1 503 6 EDO EDO . S 3 EDO C 1 504 7 EDO EDO . T 4 PG4 C 1 505 1 PG4 PG4 . U 2 LRZ D 1 501 4 LRZ GCD . V 5 HOH A 1 601 160 HOH HOH . V 5 HOH A 2 602 12 HOH HOH . V 5 HOH A 3 603 9 HOH HOH . V 5 HOH A 4 604 97 HOH HOH . V 5 HOH A 5 605 32 HOH HOH . V 5 HOH A 6 606 121 HOH HOH . V 5 HOH A 7 607 91 HOH HOH . V 5 HOH A 8 608 1 HOH HOH . V 5 HOH A 9 609 44 HOH HOH . V 5 HOH A 10 610 102 HOH HOH . V 5 HOH A 11 611 34 HOH HOH . V 5 HOH A 12 612 80 HOH HOH . V 5 HOH A 13 613 145 HOH HOH . V 5 HOH A 14 614 65 HOH HOH . V 5 HOH A 15 615 26 HOH HOH . V 5 HOH A 16 616 140 HOH HOH . V 5 HOH A 17 617 164 HOH HOH . V 5 HOH A 18 618 36 HOH HOH . V 5 HOH A 19 619 3 HOH HOH . V 5 HOH A 20 620 8 HOH HOH . V 5 HOH A 21 621 99 HOH HOH . V 5 HOH A 22 622 103 HOH HOH . V 5 HOH A 23 623 124 HOH HOH . V 5 HOH A 24 624 155 HOH HOH . V 5 HOH A 25 625 37 HOH HOH . V 5 HOH A 26 626 68 HOH HOH . V 5 HOH A 27 627 152 HOH HOH . V 5 HOH A 28 628 57 HOH HOH . V 5 HOH A 29 629 107 HOH HOH . V 5 HOH A 30 630 143 HOH HOH . V 5 HOH A 31 631 75 HOH HOH . V 5 HOH A 32 632 13 HOH HOH . V 5 HOH A 33 633 69 HOH HOH . V 5 HOH A 34 634 104 HOH HOH . V 5 HOH A 35 635 14 HOH HOH . V 5 HOH A 36 636 50 HOH HOH . V 5 HOH A 37 637 125 HOH HOH . V 5 HOH A 38 638 87 HOH HOH . V 5 HOH A 39 639 173 HOH HOH . V 5 HOH A 40 640 30 HOH HOH . V 5 HOH A 41 641 110 HOH HOH . V 5 HOH A 42 642 55 HOH HOH . V 5 HOH A 43 643 79 HOH HOH . V 5 HOH A 44 644 172 HOH HOH . V 5 HOH A 45 645 176 HOH HOH . V 5 HOH A 46 646 146 HOH HOH . V 5 HOH A 47 647 139 HOH HOH . V 5 HOH A 48 648 63 HOH HOH . V 5 HOH A 49 649 62 HOH HOH . V 5 HOH A 50 650 46 HOH HOH . W 5 HOH B 1 601 133 HOH HOH . W 5 HOH B 2 602 123 HOH HOH . W 5 HOH B 3 603 7 HOH HOH . W 5 HOH B 4 604 106 HOH HOH . W 5 HOH B 5 605 156 HOH HOH . W 5 HOH B 6 606 59 HOH HOH . W 5 HOH B 7 607 128 HOH HOH . W 5 HOH B 8 608 22 HOH HOH . W 5 HOH B 9 609 90 HOH HOH . W 5 HOH B 10 610 48 HOH HOH . W 5 HOH B 11 611 158 HOH HOH . W 5 HOH B 12 612 61 HOH HOH . W 5 HOH B 13 613 70 HOH HOH . W 5 HOH B 14 614 17 HOH HOH . W 5 HOH B 15 615 6 HOH HOH . W 5 HOH B 16 616 41 HOH HOH . W 5 HOH B 17 617 2 HOH HOH . W 5 HOH B 18 618 135 HOH HOH . W 5 HOH B 19 619 67 HOH HOH . W 5 HOH B 20 620 137 HOH HOH . W 5 HOH B 21 621 138 HOH HOH . W 5 HOH B 22 622 96 HOH HOH . W 5 HOH B 23 623 169 HOH HOH . W 5 HOH B 24 624 82 HOH HOH . W 5 HOH B 25 625 109 HOH HOH . W 5 HOH B 26 626 51 HOH HOH . W 5 HOH B 27 627 129 HOH HOH . W 5 HOH B 28 628 60 HOH HOH . W 5 HOH B 29 629 39 HOH HOH . W 5 HOH B 30 630 27 HOH HOH . W 5 HOH B 31 631 131 HOH HOH . W 5 HOH B 32 632 40 HOH HOH . W 5 HOH B 33 633 83 HOH HOH . W 5 HOH B 34 634 175 HOH HOH . W 5 HOH B 35 635 64 HOH HOH . W 5 HOH B 36 636 120 HOH HOH . W 5 HOH B 37 637 42 HOH HOH . W 5 HOH B 38 638 54 HOH HOH . W 5 HOH B 39 639 20 HOH HOH . W 5 HOH B 40 640 53 HOH HOH . W 5 HOH B 41 641 171 HOH HOH . W 5 HOH B 42 642 127 HOH HOH . X 5 HOH C 1 601 93 HOH HOH . X 5 HOH C 2 602 141 HOH HOH . X 5 HOH C 3 603 18 HOH HOH . X 5 HOH C 4 604 24 HOH HOH . X 5 HOH C 5 605 10 HOH HOH . X 5 HOH C 6 606 94 HOH HOH . X 5 HOH C 7 607 11 HOH HOH . X 5 HOH C 8 608 25 HOH HOH . X 5 HOH C 9 609 16 HOH HOH . X 5 HOH C 10 610 147 HOH HOH . X 5 HOH C 11 611 23 HOH HOH . X 5 HOH C 12 612 21 HOH HOH . X 5 HOH C 13 613 98 HOH HOH . X 5 HOH C 14 614 84 HOH HOH . X 5 HOH C 15 615 126 HOH HOH . X 5 HOH C 16 616 105 HOH HOH . X 5 HOH C 17 617 35 HOH HOH . X 5 HOH C 18 618 15 HOH HOH . X 5 HOH C 19 619 114 HOH HOH . X 5 HOH C 20 620 58 HOH HOH . X 5 HOH C 21 621 49 HOH HOH . X 5 HOH C 22 622 111 HOH HOH . X 5 HOH C 23 623 71 HOH HOH . X 5 HOH C 24 624 28 HOH HOH . X 5 HOH C 25 625 149 HOH HOH . X 5 HOH C 26 626 113 HOH HOH . X 5 HOH C 27 627 108 HOH HOH . X 5 HOH C 28 628 174 HOH HOH . X 5 HOH C 29 629 43 HOH HOH . X 5 HOH C 30 630 132 HOH HOH . X 5 HOH C 31 631 76 HOH HOH . X 5 HOH C 32 632 117 HOH HOH . X 5 HOH C 33 633 162 HOH HOH . X 5 HOH C 34 634 86 HOH HOH . X 5 HOH C 35 635 118 HOH HOH . X 5 HOH C 36 636 134 HOH HOH . Y 5 HOH D 1 601 153 HOH HOH . Y 5 HOH D 2 602 5 HOH HOH . Y 5 HOH D 3 603 78 HOH HOH . Y 5 HOH D 4 604 115 HOH HOH . Y 5 HOH D 5 605 157 HOH HOH . Y 5 HOH D 6 606 4 HOH HOH . Y 5 HOH D 7 607 100 HOH HOH . Y 5 HOH D 8 608 31 HOH HOH . Y 5 HOH D 9 609 116 HOH HOH . Y 5 HOH D 10 610 74 HOH HOH . Y 5 HOH D 11 611 45 HOH HOH . Y 5 HOH D 12 612 89 HOH HOH . Y 5 HOH D 13 613 177 HOH HOH . Y 5 HOH D 14 614 47 HOH HOH . Y 5 HOH D 15 615 81 HOH HOH . Y 5 HOH D 16 616 33 HOH HOH . Y 5 HOH D 17 617 101 HOH HOH . Y 5 HOH D 18 618 19 HOH HOH . Y 5 HOH D 19 619 95 HOH HOH . Y 5 HOH D 20 620 119 HOH HOH . Y 5 HOH D 21 621 73 HOH HOH . Y 5 HOH D 22 622 112 HOH HOH . Y 5 HOH D 23 623 77 HOH HOH . Y 5 HOH D 24 624 148 HOH HOH . Y 5 HOH D 25 625 29 HOH HOH . Y 5 HOH D 26 626 166 HOH HOH . Y 5 HOH D 27 627 130 HOH HOH . Y 5 HOH D 28 628 150 HOH HOH . Y 5 HOH D 29 629 144 HOH HOH . Y 5 HOH D 30 630 38 HOH HOH . Y 5 HOH D 31 631 56 HOH HOH . Y 5 HOH D 32 632 85 HOH HOH . Y 5 HOH D 33 633 168 HOH HOH . Y 5 HOH D 34 634 52 HOH HOH . Y 5 HOH D 35 635 66 HOH HOH . Y 5 HOH D 36 636 72 HOH HOH . Y 5 HOH D 37 637 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . S 3 17.308 17.714 169.565 1 57.92 ? C1 EDO 504 C 1 HETATM 2 O O1 EDO . . . S 3 16.011 17.587 168.955 1 61.43 ? O1 EDO 504 C 1 HETATM 3 C C2 EDO . . . S 3 17.761 19.176 169.533 1 70.37 ? C2 EDO 504 C 1 HETATM 4 O O2 EDO . . . S 3 16.627 20.049 169.698 1 56.54 ? O2 EDO 504 C 1 HETATM 5 H H11 EDO . . . S 3 18.028 17.096 169.025 1 69.51 ? H11 EDO 504 C 1 HETATM 6 H H12 EDO . . . S 3 17.267 17.361 170.597 1 69.51 ? H12 EDO 504 C 1 HETATM 7 H HO1 EDO . . . S 3 15.733 16.661 168.979 1 73.71 ? HO1 EDO 504 C 1 HETATM 8 H H21 EDO . . . S 3 18.252 19.388 168.581 1 84.45 ? H21 EDO 504 C 1 HETATM 9 H H22 EDO . . . S 3 18.482 19.355 170.334 1 84.45 ? H22 EDO 504 C 1 HETATM 10 H HO2 EDO . . . S 3 16.923 20.969 169.676 1 67.84 ? HO2 EDO 504 C 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 50 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #