data_7PV6
#
_model_server_result.job_id            n8s9mAXQ-dJkMBePSUNNQQ 
_model_server_result.datetime_utc      '2024-12-01 23:29:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pv6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":505}' 
#
_entry.id    7PV6 
#
_exptl.entry_id    7PV6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PV6 
_cell.length_a            75 
_cell.length_b            99.519 
_cell.length_c            208.46 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PV6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,N,O,V,W 1 1 
A,B,E,F,G,H,I,J,K,L,M,N,O,V,W 1 2 
C,D,P,Q,R,S,T,U,X,Y 2 1 
C,D,P,Q,R,S,T,U,X,Y 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 75 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7PV6 
_atom_sites.fract_transf_matrix[1][1]    0.013333 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010048 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004797 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 LRZ A 1 501 1 LRZ GCD . 
F 3 EDO A 1 502 3 EDO EDO . 
G 3 EDO A 1 503 8 EDO EDO . 
H 3 EDO A 1 504 9 EDO EDO . 
I 3 EDO A 1 505 12 EDO EDO . 
J 3 EDO A 1 506 14 EDO EDO . 
K 3 EDO A 1 507 15 EDO EDO . 
L 2 LRZ B 1 501 2 LRZ GCD . 
M 3 EDO B 1 502 4 EDO EDO . 
N 3 EDO B 1 503 10 EDO EDO . 
O 3 EDO B 1 504 13 EDO EDO . 
P 2 LRZ C 1 501 3 LRZ GCD . 
Q 3 EDO C 1 502 2 EDO EDO . 
R 3 EDO C 1 503 6 EDO EDO . 
S 3 EDO C 1 504 7 EDO EDO . 
T 4 PG4 C 1 505 1 PG4 PG4 . 
U 2 LRZ D 1 501 4 LRZ GCD . 
V 5 HOH A 1 601 160 HOH HOH . 
V 5 HOH A 2 602 12 HOH HOH . 
V 5 HOH A 3 603 9 HOH HOH . 
V 5 HOH A 4 604 97 HOH HOH . 
V 5 HOH A 5 605 32 HOH HOH . 
V 5 HOH A 6 606 121 HOH HOH . 
V 5 HOH A 7 607 91 HOH HOH . 
V 5 HOH A 8 608 1 HOH HOH . 
V 5 HOH A 9 609 44 HOH HOH . 
V 5 HOH A 10 610 102 HOH HOH . 
V 5 HOH A 11 611 34 HOH HOH . 
V 5 HOH A 12 612 80 HOH HOH . 
V 5 HOH A 13 613 145 HOH HOH . 
V 5 HOH A 14 614 65 HOH HOH . 
V 5 HOH A 15 615 26 HOH HOH . 
V 5 HOH A 16 616 140 HOH HOH . 
V 5 HOH A 17 617 164 HOH HOH . 
V 5 HOH A 18 618 36 HOH HOH . 
V 5 HOH A 19 619 3 HOH HOH . 
V 5 HOH A 20 620 8 HOH HOH . 
V 5 HOH A 21 621 99 HOH HOH . 
V 5 HOH A 22 622 103 HOH HOH . 
V 5 HOH A 23 623 124 HOH HOH . 
V 5 HOH A 24 624 155 HOH HOH . 
V 5 HOH A 25 625 37 HOH HOH . 
V 5 HOH A 26 626 68 HOH HOH . 
V 5 HOH A 27 627 152 HOH HOH . 
V 5 HOH A 28 628 57 HOH HOH . 
V 5 HOH A 29 629 107 HOH HOH . 
V 5 HOH A 30 630 143 HOH HOH . 
V 5 HOH A 31 631 75 HOH HOH . 
V 5 HOH A 32 632 13 HOH HOH . 
V 5 HOH A 33 633 69 HOH HOH . 
V 5 HOH A 34 634 104 HOH HOH . 
V 5 HOH A 35 635 14 HOH HOH . 
V 5 HOH A 36 636 50 HOH HOH . 
V 5 HOH A 37 637 125 HOH HOH . 
V 5 HOH A 38 638 87 HOH HOH . 
V 5 HOH A 39 639 173 HOH HOH . 
V 5 HOH A 40 640 30 HOH HOH . 
V 5 HOH A 41 641 110 HOH HOH . 
V 5 HOH A 42 642 55 HOH HOH . 
V 5 HOH A 43 643 79 HOH HOH . 
V 5 HOH A 44 644 172 HOH HOH . 
V 5 HOH A 45 645 176 HOH HOH . 
V 5 HOH A 46 646 146 HOH HOH . 
V 5 HOH A 47 647 139 HOH HOH . 
V 5 HOH A 48 648 63 HOH HOH . 
V 5 HOH A 49 649 62 HOH HOH . 
V 5 HOH A 50 650 46 HOH HOH . 
W 5 HOH B 1 601 133 HOH HOH . 
W 5 HOH B 2 602 123 HOH HOH . 
W 5 HOH B 3 603 7 HOH HOH . 
W 5 HOH B 4 604 106 HOH HOH . 
W 5 HOH B 5 605 156 HOH HOH . 
W 5 HOH B 6 606 59 HOH HOH . 
W 5 HOH B 7 607 128 HOH HOH . 
W 5 HOH B 8 608 22 HOH HOH . 
W 5 HOH B 9 609 90 HOH HOH . 
W 5 HOH B 10 610 48 HOH HOH . 
W 5 HOH B 11 611 158 HOH HOH . 
W 5 HOH B 12 612 61 HOH HOH . 
W 5 HOH B 13 613 70 HOH HOH . 
W 5 HOH B 14 614 17 HOH HOH . 
W 5 HOH B 15 615 6 HOH HOH . 
W 5 HOH B 16 616 41 HOH HOH . 
W 5 HOH B 17 617 2 HOH HOH . 
W 5 HOH B 18 618 135 HOH HOH . 
W 5 HOH B 19 619 67 HOH HOH . 
W 5 HOH B 20 620 137 HOH HOH . 
W 5 HOH B 21 621 138 HOH HOH . 
W 5 HOH B 22 622 96 HOH HOH . 
W 5 HOH B 23 623 169 HOH HOH . 
W 5 HOH B 24 624 82 HOH HOH . 
W 5 HOH B 25 625 109 HOH HOH . 
W 5 HOH B 26 626 51 HOH HOH . 
W 5 HOH B 27 627 129 HOH HOH . 
W 5 HOH B 28 628 60 HOH HOH . 
W 5 HOH B 29 629 39 HOH HOH . 
W 5 HOH B 30 630 27 HOH HOH . 
W 5 HOH B 31 631 131 HOH HOH . 
W 5 HOH B 32 632 40 HOH HOH . 
W 5 HOH B 33 633 83 HOH HOH . 
W 5 HOH B 34 634 175 HOH HOH . 
W 5 HOH B 35 635 64 HOH HOH . 
W 5 HOH B 36 636 120 HOH HOH . 
W 5 HOH B 37 637 42 HOH HOH . 
W 5 HOH B 38 638 54 HOH HOH . 
W 5 HOH B 39 639 20 HOH HOH . 
W 5 HOH B 40 640 53 HOH HOH . 
W 5 HOH B 41 641 171 HOH HOH . 
W 5 HOH B 42 642 127 HOH HOH . 
X 5 HOH C 1 601 93 HOH HOH . 
X 5 HOH C 2 602 141 HOH HOH . 
X 5 HOH C 3 603 18 HOH HOH . 
X 5 HOH C 4 604 24 HOH HOH . 
X 5 HOH C 5 605 10 HOH HOH . 
X 5 HOH C 6 606 94 HOH HOH . 
X 5 HOH C 7 607 11 HOH HOH . 
X 5 HOH C 8 608 25 HOH HOH . 
X 5 HOH C 9 609 16 HOH HOH . 
X 5 HOH C 10 610 147 HOH HOH . 
X 5 HOH C 11 611 23 HOH HOH . 
X 5 HOH C 12 612 21 HOH HOH . 
X 5 HOH C 13 613 98 HOH HOH . 
X 5 HOH C 14 614 84 HOH HOH . 
X 5 HOH C 15 615 126 HOH HOH . 
X 5 HOH C 16 616 105 HOH HOH . 
X 5 HOH C 17 617 35 HOH HOH . 
X 5 HOH C 18 618 15 HOH HOH . 
X 5 HOH C 19 619 114 HOH HOH . 
X 5 HOH C 20 620 58 HOH HOH . 
X 5 HOH C 21 621 49 HOH HOH . 
X 5 HOH C 22 622 111 HOH HOH . 
X 5 HOH C 23 623 71 HOH HOH . 
X 5 HOH C 24 624 28 HOH HOH . 
X 5 HOH C 25 625 149 HOH HOH . 
X 5 HOH C 26 626 113 HOH HOH . 
X 5 HOH C 27 627 108 HOH HOH . 
X 5 HOH C 28 628 174 HOH HOH . 
X 5 HOH C 29 629 43 HOH HOH . 
X 5 HOH C 30 630 132 HOH HOH . 
X 5 HOH C 31 631 76 HOH HOH . 
X 5 HOH C 32 632 117 HOH HOH . 
X 5 HOH C 33 633 162 HOH HOH . 
X 5 HOH C 34 634 86 HOH HOH . 
X 5 HOH C 35 635 118 HOH HOH . 
X 5 HOH C 36 636 134 HOH HOH . 
Y 5 HOH D 1 601 153 HOH HOH . 
Y 5 HOH D 2 602 5 HOH HOH . 
Y 5 HOH D 3 603 78 HOH HOH . 
Y 5 HOH D 4 604 115 HOH HOH . 
Y 5 HOH D 5 605 157 HOH HOH . 
Y 5 HOH D 6 606 4 HOH HOH . 
Y 5 HOH D 7 607 100 HOH HOH . 
Y 5 HOH D 8 608 31 HOH HOH . 
Y 5 HOH D 9 609 116 HOH HOH . 
Y 5 HOH D 10 610 74 HOH HOH . 
Y 5 HOH D 11 611 45 HOH HOH . 
Y 5 HOH D 12 612 89 HOH HOH . 
Y 5 HOH D 13 613 177 HOH HOH . 
Y 5 HOH D 14 614 47 HOH HOH . 
Y 5 HOH D 15 615 81 HOH HOH . 
Y 5 HOH D 16 616 33 HOH HOH . 
Y 5 HOH D 17 617 101 HOH HOH . 
Y 5 HOH D 18 618 19 HOH HOH . 
Y 5 HOH D 19 619 95 HOH HOH . 
Y 5 HOH D 20 620 119 HOH HOH . 
Y 5 HOH D 21 621 73 HOH HOH . 
Y 5 HOH D 22 622 112 HOH HOH . 
Y 5 HOH D 23 623 77 HOH HOH . 
Y 5 HOH D 24 624 148 HOH HOH . 
Y 5 HOH D 25 625 29 HOH HOH . 
Y 5 HOH D 26 626 166 HOH HOH . 
Y 5 HOH D 27 627 130 HOH HOH . 
Y 5 HOH D 28 628 150 HOH HOH . 
Y 5 HOH D 29 629 144 HOH HOH . 
Y 5 HOH D 30 630 38 HOH HOH . 
Y 5 HOH D 31 631 56 HOH HOH . 
Y 5 HOH D 32 632 85 HOH HOH . 
Y 5 HOH D 33 633 168 HOH HOH . 
Y 5 HOH D 34 634 52 HOH HOH . 
Y 5 HOH D 35 635 66 HOH HOH . 
Y 5 HOH D 36 636 72 HOH HOH . 
Y 5 HOH D 37 637 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 3 51.277 6.375 130.846 1 65.1 ? C1 EDO 505 A 1 
HETATM 2 O O1 EDO . . . I 3 50.321 5.832 131.763 1 82.23 ? O1 EDO 505 A 1 
HETATM 3 C C2 EDO . . . I 3 51.757 5.276 129.912 1 76.1 ? C2 EDO 505 A 1 
HETATM 4 O O2 EDO . . . I 3 53.079 4.866 130.284 1 69.4 ? O2 EDO 505 A 1 
HETATM 5 H H11 EDO . . . I 3 50.819 7.179 130.267 1 78.12 ? H11 EDO 505 A 1 
HETATM 6 H H12 EDO . . . I 3 52.124 6.789 131.396 1 78.12 ? H12 EDO 505 A 1 
HETATM 7 H HO1 EDO . . . I 3 50.014 6.529 132.359 1 98.68 ? HO1 EDO 505 A 1 
HETATM 8 H H21 EDO . . . I 3 51.761 5.642 128.883 1 91.33 ? H21 EDO 505 A 1 
HETATM 9 H H22 EDO . . . I 3 51.078 4.423 129.967 1 91.33 ? H22 EDO 505 A 1 
HETATM 10 H HO2 EDO . . . I 3 53.38 4.167 129.687 1 83.28 ? HO2 EDO 505 A 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           348 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           10 
#