data_7PVF # _model_server_result.job_id QORBdYCGAUdXnNQmxabOZA _model_server_result.datetime_utc '2024-11-29 06:15:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 7PVF # _exptl.entry_id 7PVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Guanidinium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PVF _cell.length_a 50.68 _cell.length_b 69.279 _cell.length_c 118.081 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -50.68 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C H6 N3 1' _chem_comp.formula_weight 60.078 _chem_comp.id GZ6 _chem_comp.mon_nstd_flag . _chem_comp.name Guanidinium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C GZ6 doub 129 n n C N3 GZ6 sing 130 n n C N2 GZ6 sing 131 n n N1 H1 GZ6 sing 132 n n N2 H2 GZ6 sing 133 n n N2 H3 GZ6 sing 134 n n N3 H4 GZ6 sing 135 n n N3 H5 GZ6 sing 136 n n N1 H6 GZ6 sing 137 n n # _atom_sites.entry_id 7PVF _atom_sites.fract_transf_matrix[1][1] 0.019732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HV2 A 1 801 1 HV2 HV2 . C 2 HV2 A 1 802 2 HV2 HV2 . D 3 GZ6 A 1 803 1 GZ6 GAI . E 4 HOH A 1 901 14 HOH HOH . E 4 HOH A 2 902 8 HOH HOH . E 4 HOH A 3 903 7 HOH HOH . E 4 HOH A 4 904 13 HOH HOH . E 4 HOH A 5 905 24 HOH HOH . E 4 HOH A 6 906 23 HOH HOH . E 4 HOH A 7 907 3 HOH HOH . E 4 HOH A 8 908 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C GZ6 . . . D 3 -3.655 -17.938 -26.954 1 61.38 ? C GZ6 803 A 1 HETATM 2 N N1 GZ6 . . . D 3 -4.23 -18.636 -27.978 1 63.06 ? N1 GZ6 803 A 1 HETATM 3 N N2 GZ6 . . . D 3 -2.321 -17.827 -27.064 1 63.54 ? N2 GZ6 803 A 1 HETATM 4 N N3 GZ6 . . . D 3 -4.294 -17.393 -25.964 1 68.63 ? N3 GZ6 803 A 1 HETATM 5 H H1 GZ6 . . . D 3 -5.225 -18.82 -28.063 1 76.11 ? H1 GZ6 803 A 1 HETATM 6 H H2 GZ6 . . . D 3 -1.801 -17.325 -26.351 1 76.68 ? H2 GZ6 803 A 1 HETATM 7 H H3 GZ6 . . . D 3 -1.848 -18.246 -27.858 1 76.68 ? H3 GZ6 803 A 1 HETATM 8 H H4 GZ6 . . . D 3 -5.301 -17.517 -25.948 1 81.16 ? H4 GZ6 803 A 1 HETATM 9 H H6 GZ6 . . . D 3 -3.721 -19.041 -28.757 1 76.11 ? H6 GZ6 803 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #