data_7PVO # _model_server_result.job_id m3kJYtk_rWsvKG1m2MDi-w _model_server_result.datetime_utc '2024-10-14 00:30:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pvo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7PVO # _exptl.entry_id 7PVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.417 _cell.angle_gamma 90 _cell.entry_id 7PVO _cell.length_a 69.105 _cell.length_b 61.326 _cell.length_c 119.636 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -69.105 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 173 n n P O2P IMP sing 174 n n P O3P IMP sing 175 n n P O5' IMP sing 176 n n O2P HOP2 IMP sing 177 n n O3P HOP3 IMP sing 178 n n O5' C5' IMP sing 179 n n C5' C4' IMP sing 180 n n C5' "H5'1" IMP sing 181 n n C5' "H5'2" IMP sing 182 n n C4' O4' IMP sing 183 n n C4' C3' IMP sing 184 n n C4' H4' IMP sing 185 n n O4' C1' IMP sing 186 n n C3' O3' IMP sing 187 n n C3' C2' IMP sing 188 n n C3' H3' IMP sing 189 n n O3' HO3' IMP sing 190 n n C2' O2' IMP sing 191 n n C2' C1' IMP sing 192 n n C2' H2' IMP sing 193 n n O2' HO2' IMP sing 194 n n C1' N9 IMP sing 195 n n C1' H1' IMP sing 196 n n N9 C8 IMP sing 197 n y N9 C4 IMP sing 198 n y C8 N7 IMP doub 199 n y C8 H8 IMP sing 200 n n N7 C5 IMP sing 201 n y C5 C6 IMP sing 202 n n C5 C4 IMP doub 203 n y C6 O6 IMP doub 204 n n C6 N1 IMP sing 205 n n N1 C2 IMP sing 206 n n N1 HN1 IMP sing 207 n n C2 N3 IMP doub 208 n n C2 H2 IMP sing 209 n n N3 C4 IMP sing 210 n n # _atom_sites.entry_id 7PVO _atom_sites.fract_transf_matrix[1][1] 0.014471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002141 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 501 501 IMP IMP . C 3 SO4 A 1 502 1 SO4 SO4 . D 3 SO4 A 1 503 2 SO4 SO4 . E 4 HOH A 1 601 66 HOH HOH . E 4 HOH A 2 602 222 HOH HOH . E 4 HOH A 3 603 194 HOH HOH . E 4 HOH A 4 604 96 HOH HOH . E 4 HOH A 5 605 17 HOH HOH . E 4 HOH A 6 606 234 HOH HOH . E 4 HOH A 7 607 21 HOH HOH . E 4 HOH A 8 608 230 HOH HOH . E 4 HOH A 9 609 115 HOH HOH . E 4 HOH A 10 610 146 HOH HOH . E 4 HOH A 11 611 218 HOH HOH . E 4 HOH A 12 612 4 HOH HOH . E 4 HOH A 13 613 87 HOH HOH . E 4 HOH A 14 614 22 HOH HOH . E 4 HOH A 15 615 173 HOH HOH . E 4 HOH A 16 616 216 HOH HOH . E 4 HOH A 17 617 199 HOH HOH . E 4 HOH A 18 618 45 HOH HOH . E 4 HOH A 19 619 178 HOH HOH . E 4 HOH A 20 620 180 HOH HOH . E 4 HOH A 21 621 138 HOH HOH . E 4 HOH A 22 622 91 HOH HOH . E 4 HOH A 23 623 98 HOH HOH . E 4 HOH A 24 624 183 HOH HOH . E 4 HOH A 25 625 158 HOH HOH . E 4 HOH A 26 626 106 HOH HOH . E 4 HOH A 27 627 107 HOH HOH . E 4 HOH A 28 628 97 HOH HOH . E 4 HOH A 29 629 64 HOH HOH . E 4 HOH A 30 630 121 HOH HOH . E 4 HOH A 31 631 241 HOH HOH . E 4 HOH A 32 632 36 HOH HOH . E 4 HOH A 33 633 219 HOH HOH . E 4 HOH A 34 634 58 HOH HOH . E 4 HOH A 35 635 33 HOH HOH . E 4 HOH A 36 636 34 HOH HOH . E 4 HOH A 37 637 240 HOH HOH . E 4 HOH A 38 638 214 HOH HOH . E 4 HOH A 39 639 83 HOH HOH . E 4 HOH A 40 640 59 HOH HOH . E 4 HOH A 41 641 229 HOH HOH . E 4 HOH A 42 642 185 HOH HOH . E 4 HOH A 43 643 26 HOH HOH . E 4 HOH A 44 644 144 HOH HOH . E 4 HOH A 45 645 14 HOH HOH . E 4 HOH A 46 646 38 HOH HOH . E 4 HOH A 47 647 221 HOH HOH . E 4 HOH A 48 648 161 HOH HOH . E 4 HOH A 49 649 20 HOH HOH . E 4 HOH A 50 650 236 HOH HOH . E 4 HOH A 51 651 79 HOH HOH . E 4 HOH A 52 652 39 HOH HOH . E 4 HOH A 53 653 116 HOH HOH . E 4 HOH A 54 654 133 HOH HOH . E 4 HOH A 55 655 57 HOH HOH . E 4 HOH A 56 656 51 HOH HOH . E 4 HOH A 57 657 215 HOH HOH . E 4 HOH A 58 658 239 HOH HOH . E 4 HOH A 59 659 52 HOH HOH . E 4 HOH A 60 660 217 HOH HOH . E 4 HOH A 61 661 8 HOH HOH . E 4 HOH A 62 662 208 HOH HOH . E 4 HOH A 63 663 126 HOH HOH . E 4 HOH A 64 664 7 HOH HOH . E 4 HOH A 65 665 27 HOH HOH . E 4 HOH A 66 666 37 HOH HOH . E 4 HOH A 67 667 41 HOH HOH . E 4 HOH A 68 668 63 HOH HOH . E 4 HOH A 69 669 172 HOH HOH . E 4 HOH A 70 670 177 HOH HOH . E 4 HOH A 71 671 195 HOH HOH . E 4 HOH A 72 672 163 HOH HOH . E 4 HOH A 73 673 101 HOH HOH . E 4 HOH A 74 674 35 HOH HOH . E 4 HOH A 75 675 109 HOH HOH . E 4 HOH A 76 676 48 HOH HOH . E 4 HOH A 77 677 162 HOH HOH . E 4 HOH A 78 678 148 HOH HOH . E 4 HOH A 79 679 155 HOH HOH . E 4 HOH A 80 680 10 HOH HOH . E 4 HOH A 81 681 198 HOH HOH . E 4 HOH A 82 682 68 HOH HOH . E 4 HOH A 83 683 40 HOH HOH . E 4 HOH A 84 684 125 HOH HOH . E 4 HOH A 85 685 69 HOH HOH . E 4 HOH A 86 686 77 HOH HOH . E 4 HOH A 87 687 55 HOH HOH . E 4 HOH A 88 688 86 HOH HOH . E 4 HOH A 89 689 237 HOH HOH . E 4 HOH A 90 690 23 HOH HOH . E 4 HOH A 91 691 44 HOH HOH . E 4 HOH A 92 692 170 HOH HOH . E 4 HOH A 93 693 46 HOH HOH . E 4 HOH A 94 694 89 HOH HOH . E 4 HOH A 95 695 128 HOH HOH . E 4 HOH A 96 696 113 HOH HOH . E 4 HOH A 97 697 5 HOH HOH . E 4 HOH A 98 698 28 HOH HOH . E 4 HOH A 99 699 137 HOH HOH . E 4 HOH A 100 700 16 HOH HOH . E 4 HOH A 101 701 227 HOH HOH . E 4 HOH A 102 702 29 HOH HOH . E 4 HOH A 103 703 157 HOH HOH . E 4 HOH A 104 704 151 HOH HOH . E 4 HOH A 105 705 72 HOH HOH . E 4 HOH A 106 706 104 HOH HOH . E 4 HOH A 107 707 220 HOH HOH . E 4 HOH A 108 708 111 HOH HOH . E 4 HOH A 109 709 188 HOH HOH . E 4 HOH A 110 710 19 HOH HOH . E 4 HOH A 111 711 124 HOH HOH . E 4 HOH A 112 712 204 HOH HOH . E 4 HOH A 113 713 123 HOH HOH . E 4 HOH A 114 714 49 HOH HOH . E 4 HOH A 115 715 245 HOH HOH . E 4 HOH A 116 716 60 HOH HOH . E 4 HOH A 117 717 244 HOH HOH . E 4 HOH A 118 718 85 HOH HOH . E 4 HOH A 119 719 92 HOH HOH . E 4 HOH A 120 720 192 HOH HOH . E 4 HOH A 121 721 31 HOH HOH . E 4 HOH A 122 722 6 HOH HOH . E 4 HOH A 123 723 145 HOH HOH . E 4 HOH A 124 724 53 HOH HOH . E 4 HOH A 125 725 15 HOH HOH . E 4 HOH A 126 726 80 HOH HOH . E 4 HOH A 127 727 103 HOH HOH . E 4 HOH A 128 728 224 HOH HOH . E 4 HOH A 129 729 30 HOH HOH . E 4 HOH A 130 730 11 HOH HOH . E 4 HOH A 131 731 114 HOH HOH . E 4 HOH A 132 732 140 HOH HOH . E 4 HOH A 133 733 249 HOH HOH . E 4 HOH A 134 734 131 HOH HOH . E 4 HOH A 135 735 205 HOH HOH . E 4 HOH A 136 736 18 HOH HOH . E 4 HOH A 137 737 181 HOH HOH . E 4 HOH A 138 738 94 HOH HOH . E 4 HOH A 139 739 67 HOH HOH . E 4 HOH A 140 740 136 HOH HOH . E 4 HOH A 141 741 212 HOH HOH . E 4 HOH A 142 742 226 HOH HOH . E 4 HOH A 143 743 102 HOH HOH . E 4 HOH A 144 744 3 HOH HOH . E 4 HOH A 145 745 13 HOH HOH . E 4 HOH A 146 746 223 HOH HOH . E 4 HOH A 147 747 95 HOH HOH . E 4 HOH A 148 748 43 HOH HOH . E 4 HOH A 149 749 62 HOH HOH . E 4 HOH A 150 750 100 HOH HOH . E 4 HOH A 151 751 56 HOH HOH . E 4 HOH A 152 752 201 HOH HOH . E 4 HOH A 153 753 9 HOH HOH . E 4 HOH A 154 754 42 HOH HOH . E 4 HOH A 155 755 32 HOH HOH . E 4 HOH A 156 756 200 HOH HOH . E 4 HOH A 157 757 75 HOH HOH . E 4 HOH A 158 758 61 HOH HOH . E 4 HOH A 159 759 71 HOH HOH . E 4 HOH A 160 760 233 HOH HOH . E 4 HOH A 161 761 142 HOH HOH . E 4 HOH A 162 762 108 HOH HOH . E 4 HOH A 163 763 1 HOH HOH . E 4 HOH A 164 764 166 HOH HOH . E 4 HOH A 165 765 54 HOH HOH . E 4 HOH A 166 766 141 HOH HOH . E 4 HOH A 167 767 24 HOH HOH . E 4 HOH A 168 768 211 HOH HOH . E 4 HOH A 169 769 127 HOH HOH . E 4 HOH A 170 770 2 HOH HOH . E 4 HOH A 171 771 65 HOH HOH . E 4 HOH A 172 772 118 HOH HOH . E 4 HOH A 173 773 154 HOH HOH . E 4 HOH A 174 774 117 HOH HOH . E 4 HOH A 175 775 76 HOH HOH . E 4 HOH A 176 776 82 HOH HOH . E 4 HOH A 177 777 73 HOH HOH . E 4 HOH A 178 778 207 HOH HOH . E 4 HOH A 179 779 78 HOH HOH . E 4 HOH A 180 780 134 HOH HOH . E 4 HOH A 181 781 197 HOH HOH . E 4 HOH A 182 782 12 HOH HOH . E 4 HOH A 183 783 88 HOH HOH . E 4 HOH A 184 784 167 HOH HOH . E 4 HOH A 185 785 99 HOH HOH . E 4 HOH A 186 786 235 HOH HOH . E 4 HOH A 187 787 25 HOH HOH . E 4 HOH A 188 788 93 HOH HOH . E 4 HOH A 189 789 196 HOH HOH . E 4 HOH A 190 790 90 HOH HOH . E 4 HOH A 191 791 135 HOH HOH . E 4 HOH A 192 792 81 HOH HOH . E 4 HOH A 193 793 164 HOH HOH . E 4 HOH A 194 794 149 HOH HOH . E 4 HOH A 195 795 176 HOH HOH . E 4 HOH A 196 796 132 HOH HOH . E 4 HOH A 197 797 225 HOH HOH . E 4 HOH A 198 798 139 HOH HOH . E 4 HOH A 199 799 122 HOH HOH . E 4 HOH A 200 800 169 HOH HOH . E 4 HOH A 201 801 84 HOH HOH . E 4 HOH A 202 802 186 HOH HOH . E 4 HOH A 203 803 179 HOH HOH . E 4 HOH A 204 804 191 HOH HOH . E 4 HOH A 205 805 184 HOH HOH . E 4 HOH A 206 806 129 HOH HOH . E 4 HOH A 207 807 209 HOH HOH . E 4 HOH A 208 808 165 HOH HOH . E 4 HOH A 209 809 228 HOH HOH . E 4 HOH A 210 810 247 HOH HOH . E 4 HOH A 211 811 248 HOH HOH . E 4 HOH A 212 812 105 HOH HOH . E 4 HOH A 213 813 187 HOH HOH . E 4 HOH A 214 814 246 HOH HOH . E 4 HOH A 215 815 120 HOH HOH . E 4 HOH A 216 816 50 HOH HOH . E 4 HOH A 217 817 242 HOH HOH . E 4 HOH A 218 818 130 HOH HOH . E 4 HOH A 219 819 153 HOH HOH . E 4 HOH A 220 820 112 HOH HOH . E 4 HOH A 221 821 70 HOH HOH . E 4 HOH A 222 822 110 HOH HOH . E 4 HOH A 223 823 206 HOH HOH . E 4 HOH A 224 824 210 HOH HOH . E 4 HOH A 225 825 193 HOH HOH . E 4 HOH A 226 826 174 HOH HOH . E 4 HOH A 227 827 156 HOH HOH . E 4 HOH A 228 828 232 HOH HOH . E 4 HOH A 229 829 47 HOH HOH . E 4 HOH A 230 830 159 HOH HOH . E 4 HOH A 231 831 147 HOH HOH . E 4 HOH A 232 832 168 HOH HOH . E 4 HOH A 233 833 143 HOH HOH . E 4 HOH A 234 834 238 HOH HOH . E 4 HOH A 235 835 175 HOH HOH . E 4 HOH A 236 836 243 HOH HOH . E 4 HOH A 237 837 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . B 2 -23.894 -11.033 -7.44 1 10.1 ? P IMP 501 A 1 HETATM 2 O O1P IMP . . . B 2 -25.188 -11.736 -7.106 1 8.38 ? O1P IMP 501 A 1 HETATM 3 O O2P IMP . . . B 2 -22.608 -11.759 -7.103 1 11.31 ? O2P IMP 501 A 1 HETATM 4 O O3P IMP . . . B 2 -23.87 -9.652 -6.826 1 10.2 ? O3P IMP 501 A 1 HETATM 5 O O5' IMP . . . B 2 -23.919 -10.847 -9.022 1 9.9 ? O5' IMP 501 A 1 HETATM 6 C C5' IMP . . . B 2 -25.105 -10.388 -9.682 1 9.94 ? C5' IMP 501 A 1 HETATM 7 C C4' IMP . . . B 2 -24.784 -9.549 -10.902 1 9.83 ? C4' IMP 501 A 1 HETATM 8 O O4' IMP . . . B 2 -24.149 -8.316 -10.468 1 9.9 ? O4' IMP 501 A 1 HETATM 9 C C3' IMP . . . B 2 -23.804 -10.187 -11.892 1 10.51 ? C3' IMP 501 A 1 HETATM 10 O O3' IMP . . . B 2 -24.03 -9.652 -13.194 1 11.73 ? O3' IMP 501 A 1 HETATM 11 C C2' IMP . . . B 2 -22.474 -9.663 -11.39 1 10.79 ? C2' IMP 501 A 1 HETATM 12 O O2' IMP . . . B 2 -21.415 -9.734 -12.325 1 12.29 ? O2' IMP 501 A 1 HETATM 13 C C1' IMP . . . B 2 -22.859 -8.229 -11.046 1 10.56 ? C1' IMP 501 A 1 HETATM 14 N N9 IMP . . . B 2 -21.977 -7.596 -10.077 1 9.92 ? N9 IMP 501 A 1 HETATM 15 C C8 IMP . . . B 2 -21.952 -7.779 -8.717 1 9 ? C8 IMP 501 A 1 HETATM 16 N N7 IMP . . . B 2 -20.981 -6.973 -8.222 1 9.8 ? N7 IMP 501 A 1 HETATM 17 C C5 IMP . . . B 2 -20.419 -6.293 -9.253 1 10.07 ? C5 IMP 501 A 1 HETATM 18 C C6 IMP . . . B 2 -19.41 -5.35 -9.328 1 10.7 ? C6 IMP 501 A 1 HETATM 19 O O6 IMP . . . B 2 -18.955 -4.856 -8.304 1 14.43 ? O6 IMP 501 A 1 HETATM 20 N N1 IMP . . . B 2 -19.048 -4.834 -10.558 1 11.58 ? N1 IMP 501 A 1 HETATM 21 C C2 IMP . . . B 2 -19.688 -5.24 -11.707 1 8.89 ? C2 IMP 501 A 1 HETATM 22 N N3 IMP . . . B 2 -20.696 -6.171 -11.632 1 9.12 ? N3 IMP 501 A 1 HETATM 23 C C4 IMP . . . B 2 -21.043 -6.679 -10.425 1 9.25 ? C4 IMP 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #