data_7PW5 # _model_server_result.job_id kQI_xjcY4riejDiImIk6XA _model_server_result.datetime_utc '2025-07-30 19:02:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pw5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 7PW5 # _exptl.entry_id 7PW5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PW5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PW5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 1613 A LYS 1617 1_555 D O34 IHP . A IHP 3701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? metalc ? metalc1 C OG SER 218 C SER 218 1_555 G MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc2 C OG1 THR 253 C THR 253 1_555 G MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc3 F O1G ATP . C ATP 601 1_555 G MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 F O3B ATP . C ATP 601 1_555 G MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 140 n n PG O2G ATP sing 141 n n PG O3G ATP sing 142 n n PG O3B ATP sing 143 n n O2G HOG2 ATP sing 144 n n O3G HOG3 ATP sing 145 n n PB O1B ATP doub 146 n n PB O2B ATP sing 147 n n PB O3B ATP sing 148 n n PB O3A ATP sing 149 n n O2B HOB2 ATP sing 150 n n PA O1A ATP doub 151 n n PA O2A ATP sing 152 n n PA O3A ATP sing 153 n n PA O5' ATP sing 154 n n O2A HOA2 ATP sing 155 n n O5' C5' ATP sing 156 n n C5' C4' ATP sing 157 n n C5' "H5'1" ATP sing 158 n n C5' "H5'2" ATP sing 159 n n C4' O4' ATP sing 160 n n C4' C3' ATP sing 161 n n C4' H4' ATP sing 162 n n O4' C1' ATP sing 163 n n C3' O3' ATP sing 164 n n C3' C2' ATP sing 165 n n C3' H3' ATP sing 166 n n O3' HO3' ATP sing 167 n n C2' O2' ATP sing 168 n n C2' C1' ATP sing 169 n n C2' H2' ATP sing 170 n n O2' HO2' ATP sing 171 n n C1' N9 ATP sing 172 n n C1' H1' ATP sing 173 n n N9 C8 ATP sing 174 n y N9 C4 ATP sing 175 n y C8 N7 ATP doub 176 n y C8 H8 ATP sing 177 n n N7 C5 ATP sing 178 n y C5 C6 ATP sing 179 n y C5 C4 ATP doub 180 n y C6 N6 ATP sing 181 n n C6 N1 ATP doub 182 n y N6 HN61 ATP sing 183 n n N6 HN62 ATP sing 184 n n N1 C2 ATP sing 185 n y C2 N3 ATP doub 186 n y C2 H2 ATP sing 187 n n N3 C4 ATP sing 188 n y # _atom_sites.entry_id 7PW5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 IHP A 1 3701 3702 IHP IHP . E 5 88C A 1 3702 3701 88C LIG . F 6 ATP C 1 601 601 ATP ATP . G 7 MG C 1 602 602 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 6 152.023 176.583 120.937 1 51.92 ? PG ATP 601 C 1 HETATM 2 O O1G ATP . . . F 6 150.637 177.122 121.011 1 51.92 ? O1G ATP 601 C 1 HETATM 3 O O2G ATP . . . F 6 152.387 176.026 119.56 1 51.92 -1 O2G ATP 601 C 1 HETATM 4 O O3G ATP . . . F 6 153.094 177.582 121.379 1 51.92 ? O3G ATP 601 C 1 HETATM 5 P PB ATP . . . F 6 153.245 174.76 122.966 1 51.92 ? PB ATP 601 C 1 HETATM 6 O O1B ATP . . . F 6 154.375 174.084 122.305 1 51.92 -1 O1B ATP 601 C 1 HETATM 7 O O2B ATP . . . F 6 153.617 175.892 123.919 1 51.92 ? O2B ATP 601 C 1 HETATM 8 O O3B ATP . . . F 6 152.197 175.345 121.93 1 51.92 ? O3B ATP 601 C 1 HETATM 9 P PA ATP . . . F 6 152.013 172.179 123.709 1 51.92 ? PA ATP 601 C 1 HETATM 10 O O1A ATP . . . F 6 150.581 171.961 123.427 1 51.92 -1 O1A ATP 601 C 1 HETATM 11 O O2A ATP . . . F 6 152.532 171.54 124.996 1 51.92 ? O2A ATP 601 C 1 HETATM 12 O O3A ATP . . . F 6 152.353 173.727 123.784 1 51.92 ? O3A ATP 601 C 1 HETATM 13 O O5' ATP . . . F 6 152.898 171.661 122.51 1 51.92 ? O5' ATP 601 C 1 HETATM 14 C C5' ATP . . . F 6 154.038 170.805 122.736 1 51.92 ? C5' ATP 601 C 1 HETATM 15 C C4' ATP . . . F 6 153.761 169.437 122.166 1 51.92 ? C4' ATP 601 C 1 HETATM 16 O O4' ATP . . . F 6 154.727 168.5 122.683 1 51.92 ? O4' ATP 601 C 1 HETATM 17 C C3' ATP . . . F 6 152.413 168.836 122.539 1 51.92 ? C3' ATP 601 C 1 HETATM 18 O O3' ATP . . . F 6 152.007 167.858 121.59 1 51.92 ? O3' ATP 601 C 1 HETATM 19 C C2' ATP . . . F 6 152.703 168.214 123.907 1 51.92 ? C2' ATP 601 C 1 HETATM 20 O O2' ATP . . . F 6 151.866 167.091 124.162 1 51.92 ? O2' ATP 601 C 1 HETATM 21 C C1' ATP . . . F 6 154.164 167.769 123.761 1 51.92 ? C1' ATP 601 C 1 HETATM 22 N N9 ATP . . . F 6 154.974 168.012 124.949 1 51.92 ? N9 ATP 601 C 1 HETATM 23 C C8 ATP . . . F 6 155.104 169.194 125.631 1 51.92 ? C8 ATP 601 C 1 HETATM 24 N N7 ATP . . . F 6 155.9 169.129 126.67 1 51.92 ? N7 ATP 601 C 1 HETATM 25 C C5 ATP . . . F 6 156.326 167.809 126.673 1 51.92 ? C5 ATP 601 C 1 HETATM 26 C C6 ATP . . . F 6 157.19 167.092 127.523 1 51.92 ? C6 ATP 601 C 1 HETATM 27 N N6 ATP . . . F 6 157.808 167.628 128.58 1 51.92 ? N6 ATP 601 C 1 HETATM 28 N N1 ATP . . . F 6 157.402 165.787 127.246 1 51.92 ? N1 ATP 601 C 1 HETATM 29 C C2 ATP . . . F 6 156.79 165.247 126.19 1 51.92 ? C2 ATP 601 C 1 HETATM 30 N N3 ATP . . . F 6 155.955 165.821 125.322 1 51.92 ? N3 ATP 601 C 1 HETATM 31 C C4 ATP . . . F 6 155.763 167.109 125.618 1 51.92 ? C4 ATP 601 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #