data_7PW8 # _model_server_result.job_id WvjZJu_x7DDBHSNIPxhGGA _model_server_result.datetime_utc '2024-11-22 23:26:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pw8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3702}' # _entry.id 7PW8 # _exptl.entry_id 7PW8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PW8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PW8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OG SER 218 C SER 218 1_555 G MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc2 C OG1 THR 253 C THR 253 1_555 G MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc3 F O1G ATP . C ATP 601 1_555 G MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc4 F O3B ATP . C ATP 601 1_555 G MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7PW8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 IHP A 1 3701 3702 IHP IHP . E 5 ANP A 1 3702 3701 ANP ANP . F 6 ATP C 1 601 601 ATP ATP . G 7 MG C 1 602 602 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 5 166.032 134.65 118.993 1 22.48 ? PG ANP 3702 A 1 HETATM 2 O O1G ANP . . . E 5 167.518 134.55 118.847 1 22.48 ? O1G ANP 3702 A 1 HETATM 3 O O2G ANP . . . E 5 165.684 135.713 120.105 1 22.48 ? O2G ANP 3702 A 1 HETATM 4 O O3G ANP . . . E 5 165.4 135.1 117.615 1 22.48 ? O3G ANP 3702 A 1 HETATM 5 P PB ANP . . . E 5 166.419 132.379 120.518 1 22.48 ? PB ANP 3702 A 1 HETATM 6 O O1B ANP . . . E 5 166.427 130.911 120.247 1 22.48 ? O1B ANP 3702 A 1 HETATM 7 O O2B ANP . . . E 5 167.862 132.941 120.365 1 22.48 ? O2B ANP 3702 A 1 HETATM 8 N N3B ANP . . . E 5 165.396 133.145 119.432 1 22.48 ? N3B ANP 3702 A 1 HETATM 9 P PA ANP . . . E 5 166.336 133.965 122.722 1 22.48 ? PA ANP 3702 A 1 HETATM 10 O O1A ANP . . . E 5 167.729 134.347 122.397 1 22.48 ? O1A ANP 3702 A 1 HETATM 11 O O2A ANP . . . E 5 165.287 135.024 122.374 1 22.48 ? O2A ANP 3702 A 1 HETATM 12 O O3A ANP . . . E 5 165.92 132.631 121.972 1 22.48 ? O3A ANP 3702 A 1 HETATM 13 O O5' ANP . . . E 5 166.295 133.577 124.255 1 22.48 ? O5' ANP 3702 A 1 HETATM 14 C C5' ANP . . . E 5 165.437 134.267 125.177 1 22.48 ? C5' ANP 3702 A 1 HETATM 15 C C4' ANP . . . E 5 164.508 133.268 125.818 1 22.48 ? C4' ANP 3702 A 1 HETATM 16 O O4' ANP . . . E 5 163.561 133.965 126.649 1 22.48 ? O4' ANP 3702 A 1 HETATM 17 C C3' ANP . . . E 5 163.649 132.467 124.851 1 22.48 ? C3' ANP 3702 A 1 HETATM 18 O O3' ANP . . . E 5 163.234 131.238 125.435 1 22.48 ? O3' ANP 3702 A 1 HETATM 19 C C2' ANP . . . E 5 162.468 133.408 124.606 1 22.48 ? C2' ANP 3702 A 1 HETATM 20 O O2' ANP . . . E 5 161.274 132.686 124.328 1 22.48 ? O2' ANP 3702 A 1 HETATM 21 C C1' ANP . . . E 5 162.347 134.152 125.944 1 22.48 ? C1' ANP 3702 A 1 HETATM 22 N N9 ANP . . . E 5 162.125 135.588 125.8 1 22.48 ? N9 ANP 3702 A 1 HETATM 23 C C8 ANP . . . E 5 162.7 136.423 124.879 1 22.48 ? C8 ANP 3702 A 1 HETATM 24 N N7 ANP . . . E 5 162.322 137.674 124.983 1 22.48 ? N7 ANP 3702 A 1 HETATM 25 C C5 ANP . . . E 5 161.44 137.662 126.052 1 22.48 ? C5 ANP 3702 A 1 HETATM 26 C C6 ANP . . . E 5 160.69 138.679 126.675 1 22.48 ? C6 ANP 3702 A 1 HETATM 27 N N6 ANP . . . E 5 160.711 139.957 126.291 1 22.48 ? N6 ANP 3702 A 1 HETATM 28 N N1 ANP . . . E 5 159.907 138.33 127.72 1 22.48 ? N1 ANP 3702 A 1 HETATM 29 C C2 ANP . . . E 5 159.883 137.052 128.108 1 22.48 ? C2 ANP 3702 A 1 HETATM 30 N N3 ANP . . . E 5 160.543 136.009 127.598 1 22.48 ? N3 ANP 3702 A 1 HETATM 31 C C4 ANP . . . E 5 161.311 136.383 126.568 1 22.48 ? C4 ANP 3702 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #