data_7PXC # _model_server_result.job_id qMxM1SNSguXX5xrmTvz29Q _model_server_result.datetime_utc '2024-11-14 15:41:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pxc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":701}' # _entry.id 7PXC # _exptl.entry_id 7PXC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PXC _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PXC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 36-meric _pdbx_struct_assembly.oligomeric_count 36 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 KA N N ? 5 MA N N ? 5 OA N N ? 5 RA N N ? 5 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G OG1 THR 300 A THR 300 1_555 LA MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc2 KA O1G ATP . A ATP 701 1_555 LA MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc3 KA O2G ATP . A ATP 701 1_555 LA MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc4 KA O1B ATP . A ATP 701 1_555 LA MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc5 H OG1 THR 300 B THR 300 1_555 NA MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc6 MA O1G ATP . B ATP 701 1_555 NA MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc7 MA O1B ATP . B ATP 701 1_555 NA MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc8 MA O2B ATP . B ATP 701 1_555 NA MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc9 I OG1 THR 300 C THR 300 1_555 PA MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc10 OA O1B ATP . C ATP 701 1_555 PA MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc11 OA O2B ATP . C ATP 701 1_555 PA MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc12 K OG1 THR 300 E THR 300 1_555 SA MG MG . E MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc13 RA O1G ATP . E ATP 701 1_555 SA MG MG . E MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc14 RA O2B ATP . E ATP 701 1_555 SA MG MG . E MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc15 L OG1 THR 300 F THR 300 1_555 UA MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc16 TA O1B ATP . F ATP 701 1_555 UA MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7PXC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code KA 5 ATP A 1 701 858 ATP ATP . LA 6 MG A 1 702 859 MG MG . MA 5 ATP B 1 701 858 ATP ATP . NA 6 MG B 1 702 859 MG MG . OA 5 ATP C 1 701 858 ATP ATP . PA 6 MG C 1 702 859 MG MG . QA 7 ADP D 1 701 701 ADP ADP . RA 5 ATP E 1 701 858 ATP ATP . SA 6 MG E 1 702 859 MG MG . TA 5 ATP F 1 701 858 ATP ATP . UA 6 MG F 1 702 859 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . KA 5 210.3 183.486 129.238 1 67.38 ? PG ATP 701 A 1 HETATM 2 O O1G ATP . . . KA 5 208.939 183.924 128.758 1 67.38 ? O1G ATP 701 A 1 HETATM 3 O O2G ATP . . . KA 5 211.3 183.234 128.136 1 67.38 -1 O2G ATP 701 A 1 HETATM 4 O O3G ATP . . . KA 5 210.839 184.284 130.396 1 67.38 ? O3G ATP 701 A 1 HETATM 5 P PB ATP . . . KA 5 209.162 180.965 129.02 1 67.38 ? PB ATP 701 A 1 HETATM 6 O O1B ATP . . . KA 5 209.655 180.964 127.594 1 67.38 -1 O1B ATP 701 A 1 HETATM 7 O O2B ATP . . . KA 5 207.709 181.245 129.308 1 67.38 ? O2B ATP 701 A 1 HETATM 8 O O3B ATP . . . KA 5 210.03 182.027 129.857 1 67.38 ? O3B ATP 701 A 1 HETATM 9 P PA ATP . . . KA 5 209.535 178.204 128.845 1 67.38 ? PA ATP 701 A 1 HETATM 10 O O1A ATP . . . KA 5 208.104 177.851 128.521 1 67.38 -1 O1A ATP 701 A 1 HETATM 11 O O2A ATP . . . KA 5 210.525 178.368 127.719 1 67.38 ? O2A ATP 701 A 1 HETATM 12 O O3A ATP . . . KA 5 209.524 179.559 129.713 1 67.38 ? O3A ATP 701 A 1 HETATM 13 O O5' ATP . . . KA 5 210.114 177.112 129.876 1 67.38 ? O5' ATP 701 A 1 HETATM 14 C C5' ATP . . . KA 5 211.291 177.387 130.629 1 67.38 ? C5' ATP 701 A 1 HETATM 15 C C4' ATP . . . KA 5 211.883 176.084 131.156 1 67.38 ? C4' ATP 701 A 1 HETATM 16 O O4' ATP . . . KA 5 211.148 175.573 132.272 1 67.38 ? O4' ATP 701 A 1 HETATM 17 C C3' ATP . . . KA 5 211.877 174.992 130.098 1 67.38 ? C3' ATP 701 A 1 HETATM 18 O O3' ATP . . . KA 5 213.198 174.797 129.588 1 67.38 ? O3' ATP 701 A 1 HETATM 19 C C2' ATP . . . KA 5 211.415 173.739 130.812 1 67.38 ? C2' ATP 701 A 1 HETATM 20 O O2' ATP . . . KA 5 212.399 172.711 130.691 1 67.38 ? O2' ATP 701 A 1 HETATM 21 C C1' ATP . . . KA 5 211.254 174.147 132.267 1 67.38 ? C1' ATP 701 A 1 HETATM 22 N N9 ATP . . . KA 5 210.071 173.481 132.869 1 67.38 ? N9 ATP 701 A 1 HETATM 23 C C8 ATP . . . KA 5 209.992 172.172 133.163 1 67.38 ? C8 ATP 701 A 1 HETATM 24 N N7 ATP . . . KA 5 208.794 171.852 133.709 1 67.38 ? N7 ATP 701 A 1 HETATM 25 C C5 ATP . . . KA 5 208.076 172.986 133.774 1 67.38 ? C5 ATP 701 A 1 HETATM 26 C C6 ATP . . . KA 5 206.724 173.357 134.246 1 67.38 ? C6 ATP 701 A 1 HETATM 27 N N6 ATP . . . KA 5 205.884 172.434 134.768 1 67.38 ? N6 ATP 701 A 1 HETATM 28 N N1 ATP . . . KA 5 206.356 174.65 134.137 1 67.38 ? N1 ATP 701 A 1 HETATM 29 C C2 ATP . . . KA 5 207.185 175.575 133.621 1 67.38 ? C2 ATP 701 A 1 HETATM 30 N N3 ATP . . . KA 5 208.424 175.311 133.174 1 67.38 ? N3 ATP 701 A 1 HETATM 31 C C4 ATP . . . KA 5 208.921 174.056 133.223 1 67.38 ? C4 ATP 701 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 105 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #