data_7PXD # _model_server_result.job_id kYanuEYmq9S94dhCT-ysYg _model_server_result.datetime_utc '2024-10-10 14:25:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":701}' # _entry.id 7PXD # _exptl.entry_id 7PXD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PXD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 36-meric _pdbx_struct_assembly.oligomeric_count 36 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 KA N N ? 5 MA N N ? 5 OA N N ? 5 QA N N ? 5 SA N N ? 5 UA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G OG1 THR 300 A THR 300 1_555 LA MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc2 KA O1G ATP . A ATP 701 1_555 LA MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 KA O1B ATP . A ATP 701 1_555 LA MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc4 H OG1 THR 300 B THR 300 1_555 NA MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc5 MA O1G ATP . B ATP 701 1_555 NA MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc6 MA O1B ATP . B ATP 701 1_555 NA MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc7 I OG1 THR 300 C THR 300 1_555 PA MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc8 OA O1G ATP . C ATP 701 1_555 PA MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc9 OA O1B ATP . C ATP 701 1_555 PA MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc10 J OG1 THR 300 D THR 300 1_555 RA MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc11 J OD1 ASP 371 D ASP 371 1_555 RA MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc12 QA O1G ATP . D ATP 701 1_555 RA MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc13 QA O1B ATP . D ATP 701 1_555 RA MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc14 QA O2B ATP . D ATP 701 1_555 RA MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc15 K OG1 THR 300 E THR 300 1_555 TA MG MG . E MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc16 SA O1G ATP . E ATP 701 1_555 TA MG MG . E MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc17 SA O1B ATP . E ATP 701 1_555 TA MG MG . E MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc18 L OG1 THR 300 F THR 300 1_555 VA MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc19 UA O1G ATP . F ATP 701 1_555 VA MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc20 UA O1B ATP . F ATP 701 1_555 VA MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7PXD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code KA 5 ATP A 1 701 858 ATP ATP . LA 6 MG A 1 702 859 MG MG . MA 5 ATP B 1 701 858 ATP ATP . NA 6 MG B 1 702 859 MG MG . OA 5 ATP C 1 701 858 ATP ATP . PA 6 MG C 1 702 859 MG MG . QA 5 ATP D 1 701 858 ATP ATP . RA 6 MG D 1 702 859 MG MG . SA 5 ATP E 1 701 858 ATP ATP . TA 6 MG E 1 702 859 MG MG . UA 5 ATP F 1 701 858 ATP ATP . VA 6 MG F 1 702 859 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . KA 5 210.104 183.697 130.619 1 50 ? PG ATP 701 A 1 HETATM 2 O O1G ATP . . . KA 5 209.799 183.777 129.143 1 50 ? O1G ATP 701 A 1 HETATM 3 O O2G ATP . . . KA 5 211.501 184.131 130.984 1 50 -1 O2G ATP 701 A 1 HETATM 4 O O3G ATP . . . KA 5 209.022 184.277 131.491 1 50 ? O3G ATP 701 A 1 HETATM 5 P PB ATP . . . KA 5 208.821 181.185 130.65 1 50 ? PB ATP 701 A 1 HETATM 6 O O1B ATP . . . KA 5 208.653 181.081 129.159 1 50 -1 O1B ATP 701 A 1 HETATM 7 O O2B ATP . . . KA 5 207.658 181.612 131.51 1 50 ? O2B ATP 701 A 1 HETATM 8 O O3B ATP . . . KA 5 210.072 182.133 131.002 1 50 ? O3B ATP 701 A 1 HETATM 9 P PA ATP . . . KA 5 209.501 178.588 130.032 1 50 ? PA ATP 701 A 1 HETATM 10 O O1A ATP . . . KA 5 208.147 178.221 129.481 1 50 -1 O1A ATP 701 A 1 HETATM 11 O O2A ATP . . . KA 5 210.582 179.044 129.081 1 50 ? O2A ATP 701 A 1 HETATM 12 O O3A ATP . . . KA 5 209.301 179.735 131.142 1 50 ? O3A ATP 701 A 1 HETATM 13 O O5' ATP . . . KA 5 210.057 177.346 130.883 1 50 ? O5' ATP 701 A 1 HETATM 14 C C5' ATP . . . KA 5 211.199 177.501 131.716 1 50 ? C5' ATP 701 A 1 HETATM 15 C C4' ATP . . . KA 5 211.748 176.123 132.049 1 50 ? C4' ATP 701 A 1 HETATM 16 O O4' ATP . . . KA 5 211.064 175.539 133.159 1 50 ? O4' ATP 701 A 1 HETATM 17 C C3' ATP . . . KA 5 211.565 175.173 130.877 1 50 ? C3' ATP 701 A 1 HETATM 18 O O3' ATP . . . KA 5 212.812 174.97 130.21 1 50 ? O3' ATP 701 A 1 HETATM 19 C C2' ATP . . . KA 5 211.078 173.875 131.489 1 50 ? C2' ATP 701 A 1 HETATM 20 O O2' ATP . . . KA 5 211.993 172.82 131.18 1 50 ? O2' ATP 701 A 1 HETATM 21 C C1' ATP . . . KA 5 211.053 174.122 132.986 1 50 ? C1' ATP 701 A 1 HETATM 22 N N9 ATP . . . KA 5 209.855 173.499 133.605 1 50 ? N9 ATP 701 A 1 HETATM 23 C C8 ATP . . . KA 5 209.76 172.213 133.987 1 50 ? C8 ATP 701 A 1 HETATM 24 N N7 ATP . . . KA 5 208.547 171.942 134.524 1 50 ? N7 ATP 701 A 1 HETATM 25 C C5 ATP . . . KA 5 207.837 173.081 134.491 1 50 ? C5 ATP 701 A 1 HETATM 26 C C6 ATP . . . KA 5 206.477 173.493 134.902 1 50 ? C6 ATP 701 A 1 HETATM 27 N N6 ATP . . . KA 5 205.619 172.611 135.466 1 50 ? N6 ATP 701 A 1 HETATM 28 N N1 ATP . . . KA 5 206.123 174.778 134.694 1 50 ? N1 ATP 701 A 1 HETATM 29 C C2 ATP . . . KA 5 206.971 175.658 134.136 1 50 ? C2 ATP 701 A 1 HETATM 30 N N3 ATP . . . KA 5 208.219 175.356 133.739 1 50 ? N3 ATP 701 A 1 HETATM 31 C C4 ATP . . . KA 5 208.704 174.103 133.888 1 50 ? C4 ATP 701 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 106 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #