data_7PXD # _model_server_result.job_id ImqU4Catrs0N0Ngs808-3Q _model_server_result.datetime_utc '2024-10-10 14:21:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RA","auth_seq_id":702}' # _entry.id 7PXD # _exptl.entry_id 7PXD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PXD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 36-meric _pdbx_struct_assembly.oligomeric_count 36 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 LA N N ? 6 NA N N ? 6 PA N N ? 6 RA N N ? 6 TA N N ? 6 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G OG1 THR 300 A THR 300 1_555 LA MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc2 KA O1G ATP . A ATP 701 1_555 LA MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 KA O1B ATP . A ATP 701 1_555 LA MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc4 H OG1 THR 300 B THR 300 1_555 NA MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc5 MA O1G ATP . B ATP 701 1_555 NA MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc6 MA O1B ATP . B ATP 701 1_555 NA MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc7 I OG1 THR 300 C THR 300 1_555 PA MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc8 OA O1G ATP . C ATP 701 1_555 PA MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc9 OA O1B ATP . C ATP 701 1_555 PA MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc10 J OG1 THR 300 D THR 300 1_555 RA MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc11 J OD1 ASP 371 D ASP 371 1_555 RA MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc12 QA O1G ATP . D ATP 701 1_555 RA MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc13 QA O1B ATP . D ATP 701 1_555 RA MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc14 QA O2B ATP . D ATP 701 1_555 RA MG MG . D MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc15 K OG1 THR 300 E THR 300 1_555 TA MG MG . E MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc16 SA O1G ATP . E ATP 701 1_555 TA MG MG . E MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc17 SA O1B ATP . E ATP 701 1_555 TA MG MG . E MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc18 L OG1 THR 300 F THR 300 1_555 VA MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc19 UA O1G ATP . F ATP 701 1_555 VA MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc20 UA O1B ATP . F ATP 701 1_555 VA MG MG . F MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7PXD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code KA 5 ATP A 1 701 858 ATP ATP . LA 6 MG A 1 702 859 MG MG . MA 5 ATP B 1 701 858 ATP ATP . NA 6 MG B 1 702 859 MG MG . OA 5 ATP C 1 701 858 ATP ATP . PA 6 MG C 1 702 859 MG MG . QA 5 ATP D 1 701 858 ATP ATP . RA 6 MG D 1 702 859 MG MG . SA 5 ATP E 1 701 858 ATP ATP . TA 6 MG E 1 702 859 MG MG . UA 5 ATP F 1 701 858 ATP ATP . VA 6 MG F 1 702 859 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id RA _atom_site.label_entity_id 6 _atom_site.Cartn_x 183.064 _atom_site.Cartn_y 203.596 _atom_site.Cartn_z 126.063 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 145.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 702 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 86 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #