data_7PXS
#
_model_server_result.job_id            TSLQCv4tXIgy-RnJl0bAqw 
_model_server_result.datetime_utc      '2024-11-15 05:45:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pxs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    7PXS 
#
_exptl.entry_id    7PXS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PXS 
_cell.length_a            126.63 
_cell.length_b            126.63 
_cell.length_c            126.63 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PXS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        213 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 A CYS 41 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
covale ? covale1 A C HIC 1 A HIC 1 1_555 A N THR 2 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A ND2 ASN 33 A ASN 33 1_555 C C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
metalc ? metalc1 A N HIC 1 A HIC 1 1_555 B CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc2 A ND1 HIC 1 A HIC 1 1_555 B CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? 
metalc ? metalc3 A NE2 HIS 78 A HIS 78 1_555 B CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc4 B CU CU . A CU 301 1_555 D O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc5 B CU CU . A CU 301 1_555 D O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 260 n n 
C1 O1 NAG sing 261 n n 
C1 O5 NAG sing 262 n n 
C1 H1 NAG sing 263 n n 
C2 C3 NAG sing 264 n n 
C2 N2 NAG sing 265 n n 
C2 H2 NAG sing 266 n n 
C3 C4 NAG sing 267 n n 
C3 O3 NAG sing 268 n n 
C3 H3 NAG sing 269 n n 
C4 C5 NAG sing 270 n n 
C4 O4 NAG sing 271 n n 
C4 H4 NAG sing 272 n n 
C5 C6 NAG sing 273 n n 
C5 O5 NAG sing 274 n n 
C5 H5 NAG sing 275 n n 
C6 O6 NAG sing 276 n n 
C6 H61 NAG sing 277 n n 
C6 H62 NAG sing 278 n n 
C7 C8 NAG sing 279 n n 
C7 N2 NAG sing 280 n n 
C7 O7 NAG doub 281 n n 
C8 H81 NAG sing 282 n n 
C8 H82 NAG sing 283 n n 
C8 H83 NAG sing 284 n n 
N2 HN2 NAG sing 285 n n 
O1 HO1 NAG sing 286 n n 
O3 HO3 NAG sing 287 n n 
O4 HO4 NAG sing 288 n n 
O6 HO6 NAG sing 289 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7PXS 
_atom_sites.fract_transf_matrix[1][1]    0.007897 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007897 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007897 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 301 301 CU CU . 
C 3 NAG A 1 302 401 NAG NAG . 
D 4 HOH A 1 401 95 HOH HOH . 
D 4 HOH A 2 402 82 HOH HOH . 
D 4 HOH A 3 403 124 HOH HOH . 
D 4 HOH A 4 404 56 HOH HOH . 
D 4 HOH A 5 405 115 HOH HOH . 
D 4 HOH A 6 406 118 HOH HOH . 
D 4 HOH A 7 407 87 HOH HOH . 
D 4 HOH A 8 408 29 HOH HOH . 
D 4 HOH A 9 409 90 HOH HOH . 
D 4 HOH A 10 410 122 HOH HOH . 
D 4 HOH A 11 411 52 HOH HOH . 
D 4 HOH A 12 412 111 HOH HOH . 
D 4 HOH A 13 413 57 HOH HOH . 
D 4 HOH A 14 414 21 HOH HOH . 
D 4 HOH A 15 415 60 HOH HOH . 
D 4 HOH A 16 416 61 HOH HOH . 
D 4 HOH A 17 417 108 HOH HOH . 
D 4 HOH A 18 418 104 HOH HOH . 
D 4 HOH A 19 419 46 HOH HOH . 
D 4 HOH A 20 420 50 HOH HOH . 
D 4 HOH A 21 421 28 HOH HOH . 
D 4 HOH A 22 422 120 HOH HOH . 
D 4 HOH A 23 423 11 HOH HOH . 
D 4 HOH A 24 424 25 HOH HOH . 
D 4 HOH A 25 425 65 HOH HOH . 
D 4 HOH A 26 426 127 HOH HOH . 
D 4 HOH A 27 427 13 HOH HOH . 
D 4 HOH A 28 428 77 HOH HOH . 
D 4 HOH A 29 429 58 HOH HOH . 
D 4 HOH A 30 430 94 HOH HOH . 
D 4 HOH A 31 431 80 HOH HOH . 
D 4 HOH A 32 432 51 HOH HOH . 
D 4 HOH A 33 433 126 HOH HOH . 
D 4 HOH A 34 434 128 HOH HOH . 
D 4 HOH A 35 435 6 HOH HOH . 
D 4 HOH A 36 436 34 HOH HOH . 
D 4 HOH A 37 437 133 HOH HOH . 
D 4 HOH A 38 438 84 HOH HOH . 
D 4 HOH A 39 439 92 HOH HOH . 
D 4 HOH A 40 440 86 HOH HOH . 
D 4 HOH A 41 441 44 HOH HOH . 
D 4 HOH A 42 442 24 HOH HOH . 
D 4 HOH A 43 443 93 HOH HOH . 
D 4 HOH A 44 444 33 HOH HOH . 
D 4 HOH A 45 445 18 HOH HOH . 
D 4 HOH A 46 446 10 HOH HOH . 
D 4 HOH A 47 447 7 HOH HOH . 
D 4 HOH A 48 448 45 HOH HOH . 
D 4 HOH A 49 449 98 HOH HOH . 
D 4 HOH A 50 450 134 HOH HOH . 
D 4 HOH A 51 451 71 HOH HOH . 
D 4 HOH A 52 452 38 HOH HOH . 
D 4 HOH A 53 453 30 HOH HOH . 
D 4 HOH A 54 454 36 HOH HOH . 
D 4 HOH A 55 455 19 HOH HOH . 
D 4 HOH A 56 456 42 HOH HOH . 
D 4 HOH A 57 457 54 HOH HOH . 
D 4 HOH A 58 458 3 HOH HOH . 
D 4 HOH A 59 459 23 HOH HOH . 
D 4 HOH A 60 460 76 HOH HOH . 
D 4 HOH A 61 461 26 HOH HOH . 
D 4 HOH A 62 462 85 HOH HOH . 
D 4 HOH A 63 463 20 HOH HOH . 
D 4 HOH A 64 464 112 HOH HOH . 
D 4 HOH A 65 465 72 HOH HOH . 
D 4 HOH A 66 466 9 HOH HOH . 
D 4 HOH A 67 467 59 HOH HOH . 
D 4 HOH A 68 468 96 HOH HOH . 
D 4 HOH A 69 469 100 HOH HOH . 
D 4 HOH A 70 470 16 HOH HOH . 
D 4 HOH A 71 471 27 HOH HOH . 
D 4 HOH A 72 472 117 HOH HOH . 
D 4 HOH A 73 473 55 HOH HOH . 
D 4 HOH A 74 474 131 HOH HOH . 
D 4 HOH A 75 475 119 HOH HOH . 
D 4 HOH A 76 476 31 HOH HOH . 
D 4 HOH A 77 477 102 HOH HOH . 
D 4 HOH A 78 478 105 HOH HOH . 
D 4 HOH A 79 479 64 HOH HOH . 
D 4 HOH A 80 480 66 HOH HOH . 
D 4 HOH A 81 481 103 HOH HOH . 
D 4 HOH A 82 482 12 HOH HOH . 
D 4 HOH A 83 483 53 HOH HOH . 
D 4 HOH A 84 484 137 HOH HOH . 
D 4 HOH A 85 485 88 HOH HOH . 
D 4 HOH A 86 486 74 HOH HOH . 
D 4 HOH A 87 487 113 HOH HOH . 
D 4 HOH A 88 488 1 HOH HOH . 
D 4 HOH A 89 489 35 HOH HOH . 
D 4 HOH A 90 490 83 HOH HOH . 
D 4 HOH A 91 491 125 HOH HOH . 
D 4 HOH A 92 492 73 HOH HOH . 
D 4 HOH A 93 493 109 HOH HOH . 
D 4 HOH A 94 494 40 HOH HOH . 
D 4 HOH A 95 495 22 HOH HOH . 
D 4 HOH A 96 496 75 HOH HOH . 
D 4 HOH A 97 497 47 HOH HOH . 
D 4 HOH A 98 498 139 HOH HOH . 
D 4 HOH A 99 499 14 HOH HOH . 
D 4 HOH A 100 500 63 HOH HOH . 
D 4 HOH A 101 501 114 HOH HOH . 
D 4 HOH A 102 502 106 HOH HOH . 
D 4 HOH A 103 503 43 HOH HOH . 
D 4 HOH A 104 504 67 HOH HOH . 
D 4 HOH A 105 505 41 HOH HOH . 
D 4 HOH A 106 506 99 HOH HOH . 
D 4 HOH A 107 507 81 HOH HOH . 
D 4 HOH A 108 508 79 HOH HOH . 
D 4 HOH A 109 509 69 HOH HOH . 
D 4 HOH A 110 510 15 HOH HOH . 
D 4 HOH A 111 511 121 HOH HOH . 
D 4 HOH A 112 512 17 HOH HOH . 
D 4 HOH A 113 513 70 HOH HOH . 
D 4 HOH A 114 514 136 HOH HOH . 
D 4 HOH A 115 515 132 HOH HOH . 
D 4 HOH A 116 516 91 HOH HOH . 
D 4 HOH A 117 517 2 HOH HOH . 
D 4 HOH A 118 518 123 HOH HOH . 
D 4 HOH A 119 519 32 HOH HOH . 
D 4 HOH A 120 520 78 HOH HOH . 
D 4 HOH A 121 521 4 HOH HOH . 
D 4 HOH A 122 522 39 HOH HOH . 
D 4 HOH A 123 523 68 HOH HOH . 
D 4 HOH A 124 524 37 HOH HOH . 
D 4 HOH A 125 525 5 HOH HOH . 
D 4 HOH A 126 526 101 HOH HOH . 
D 4 HOH A 127 527 8 HOH HOH . 
D 4 HOH A 128 528 129 HOH HOH . 
D 4 HOH A 129 529 48 HOH HOH . 
D 4 HOH A 130 530 107 HOH HOH . 
D 4 HOH A 131 531 138 HOH HOH . 
D 4 HOH A 132 532 97 HOH HOH . 
D 4 HOH A 133 533 130 HOH HOH . 
D 4 HOH A 134 534 49 HOH HOH . 
D 4 HOH A 135 535 89 HOH HOH . 
D 4 HOH A 136 536 135 HOH HOH . 
D 4 HOH A 137 537 62 HOH HOH . 
D 4 HOH A 138 538 110 HOH HOH . 
D 4 HOH A 139 539 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 -25.032 -5.817 12.469 1 49.93 ? C1 NAG 302 A 1 
HETATM 2 C C2 NAG . . . C 3 -25.729 -4.484 12.573 1 53.38 ? C2 NAG 302 A 1 
HETATM 3 C C3 NAG . . . C 3 -27.036 -4.576 11.796 1 54.77 ? C3 NAG 302 A 1 
HETATM 4 C C4 NAG . . . C 3 -26.849 -5.311 10.467 1 57.34 ? C4 NAG 302 A 1 
HETATM 5 C C5 NAG . . . C 3 -26.035 -6.605 10.545 1 52.69 ? C5 NAG 302 A 1 
HETATM 6 C C6 NAG . . . C 3 -25.869 -7.366 9.212 1 47.05 ? C6 NAG 302 A 1 
HETATM 7 C C7 NAG . . . C 3 -25.322 -3.087 14.519 1 55.28 ? C7 NAG 302 A 1 
HETATM 8 C C8 NAG . . . C 3 -25.553 -3.002 15.986 1 56.14 ? C8 NAG 302 A 1 
HETATM 9 N N2 NAG . . . C 3 -25.868 -4.192 13.992 1 55.04 ? N2 NAG 302 A 1 
HETATM 10 O O3 NAG . . . C 3 -27.433 -3.276 11.374 1 58.59 ? O3 NAG 302 A 1 
HETATM 11 O O4 NAG . . . C 3 -28.156 -5.652 10.083 1 67.58 ? O4 NAG 302 A 1 
HETATM 12 O O5 NAG . . . C 3 -24.783 -6.189 11.118 1 51.3 ? O5 NAG 302 A 1 
HETATM 13 O O6 NAG . . . C 3 -25.167 -6.577 8.229 1 42.78 ? O6 NAG 302 A 1 
HETATM 14 O O7 NAG . . . C 3 -24.699 -2.221 13.881 1 52.58 ? O7 NAG 302 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           660 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#