data_7PYB # _model_server_result.job_id HL6KDVIn945fVi_eEJHdGw _model_server_result.datetime_utc '2024-12-02 15:52:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 7PYB # _exptl.entry_id 7PYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Guanidinium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PYB _cell.length_a 50.279 _cell.length_b 69.229 _cell.length_c 117.781 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -50.279 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C H6 N3 1' _chem_comp.formula_weight 60.078 _chem_comp.id GZ6 _chem_comp.mon_nstd_flag . _chem_comp.name Guanidinium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C GZ6 doub 129 n n C N3 GZ6 sing 130 n n C N2 GZ6 sing 131 n n N1 H1 GZ6 sing 132 n n N2 H2 GZ6 sing 133 n n N2 H3 GZ6 sing 134 n n N3 H4 GZ6 sing 135 n n N3 H5 GZ6 sing 136 n n N1 H6 GZ6 sing 137 n n # _atom_sites.entry_id 7PYB _atom_sites.fract_transf_matrix[1][1] 0.019889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GZ6 A 1 801 801 GZ6 GZ6 . C 3 HRZ A 1 802 1 HRZ HRZ . D 4 HOH A 1 901 14 HOH HOH . D 4 HOH A 2 902 32 HOH HOH . D 4 HOH A 3 903 3 HOH HOH . D 4 HOH A 4 904 19 HOH HOH . D 4 HOH A 5 905 5 HOH HOH . D 4 HOH A 6 906 27 HOH HOH . D 4 HOH A 7 907 4 HOH HOH . D 4 HOH A 8 908 2 HOH HOH . D 4 HOH A 9 909 16 HOH HOH . D 4 HOH A 10 910 18 HOH HOH . D 4 HOH A 11 911 10 HOH HOH . D 4 HOH A 12 912 13 HOH HOH . D 4 HOH A 13 913 9 HOH HOH . D 4 HOH A 14 914 6 HOH HOH . D 4 HOH A 15 915 22 HOH HOH . D 4 HOH A 16 916 20 HOH HOH . D 4 HOH A 17 917 11 HOH HOH . D 4 HOH A 18 918 17 HOH HOH . D 4 HOH A 19 919 42 HOH HOH . D 4 HOH A 20 920 39 HOH HOH . D 4 HOH A 21 921 8 HOH HOH . D 4 HOH A 22 922 26 HOH HOH . D 4 HOH A 23 923 44 HOH HOH . D 4 HOH A 24 924 36 HOH HOH . D 4 HOH A 25 925 23 HOH HOH . D 4 HOH A 26 926 37 HOH HOH . D 4 HOH A 27 927 24 HOH HOH . D 4 HOH A 28 928 43 HOH HOH . D 4 HOH A 29 929 35 HOH HOH . D 4 HOH A 30 930 21 HOH HOH . D 4 HOH A 31 931 28 HOH HOH . D 4 HOH A 32 932 25 HOH HOH . D 4 HOH A 33 933 40 HOH HOH . D 4 HOH A 34 934 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C GZ6 . . . B 2 -3.187 -17.558 -26.56 1 72.81 ? C GZ6 801 A 1 HETATM 2 N N1 GZ6 . . . B 2 -1.915 -18.065 -26.403 1 65.68 ? N1 GZ6 801 A 1 HETATM 3 N N2 GZ6 . . . B 2 -3.695 -16.759 -25.548 1 73.23 ? N2 GZ6 801 A 1 HETATM 4 N N3 GZ6 . . . B 2 -3.851 -17.843 -27.642 1 67.55 ? N3 GZ6 801 A 1 HETATM 5 H H1 GZ6 . . . B 2 -1.463 -18.659 -27.091 1 78.83 ? H1 GZ6 801 A 1 HETATM 6 H H2 GZ6 . . . B 2 -3.195 -16.52 -24.697 1 87.9 ? H2 GZ6 801 A 1 HETATM 7 H H3 GZ6 . . . B 2 -4.616 -16.333 -25.556 1 87.9 ? H3 GZ6 801 A 1 HETATM 8 H H4 GZ6 . . . B 2 -4.786 -17.456 -27.719 1 80.98 ? H4 GZ6 801 A 1 HETATM 9 H H6 GZ6 . . . B 2 -1.339 -17.882 -25.587 1 78.83 ? H6 GZ6 801 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #