data_7PYB # _model_server_result.job_id Glr1rAB1k5XKr8nmvkcnpA _model_server_result.datetime_utc '2024-11-08 13:44:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 7PYB # _exptl.entry_id 7PYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 95.099 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1~{H}-pyridin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PYB _cell.length_a 50.279 _cell.length_b 69.229 _cell.length_c 117.781 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -50.279 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H5 N O' _chem_comp.formula_weight 95.099 _chem_comp.id HRZ _chem_comp.mon_nstd_flag . _chem_comp.name 1~{H}-pyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 HRZ doub 161 n n C2 C3 HRZ sing 162 n n C2 N7 HRZ sing 163 n n C3 C4 HRZ doub 164 n n N7 C6 HRZ sing 165 n n C4 C5 HRZ sing 166 n n C6 C5 HRZ doub 167 n n C3 H8 HRZ sing 168 n n C5 H10 HRZ sing 169 n n C6 H11 HRZ sing 170 n n C4 H9 HRZ sing 171 n n N7 H12 HRZ sing 172 n n # _atom_sites.entry_id 7PYB _atom_sites.fract_transf_matrix[1][1] 0.019889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GZ6 A 1 801 801 GZ6 GZ6 . C 3 HRZ A 1 802 1 HRZ HRZ . D 4 HOH A 1 901 14 HOH HOH . D 4 HOH A 2 902 32 HOH HOH . D 4 HOH A 3 903 3 HOH HOH . D 4 HOH A 4 904 19 HOH HOH . D 4 HOH A 5 905 5 HOH HOH . D 4 HOH A 6 906 27 HOH HOH . D 4 HOH A 7 907 4 HOH HOH . D 4 HOH A 8 908 2 HOH HOH . D 4 HOH A 9 909 16 HOH HOH . D 4 HOH A 10 910 18 HOH HOH . D 4 HOH A 11 911 10 HOH HOH . D 4 HOH A 12 912 13 HOH HOH . D 4 HOH A 13 913 9 HOH HOH . D 4 HOH A 14 914 6 HOH HOH . D 4 HOH A 15 915 22 HOH HOH . D 4 HOH A 16 916 20 HOH HOH . D 4 HOH A 17 917 11 HOH HOH . D 4 HOH A 18 918 17 HOH HOH . D 4 HOH A 19 919 42 HOH HOH . D 4 HOH A 20 920 39 HOH HOH . D 4 HOH A 21 921 8 HOH HOH . D 4 HOH A 22 922 26 HOH HOH . D 4 HOH A 23 923 44 HOH HOH . D 4 HOH A 24 924 36 HOH HOH . D 4 HOH A 25 925 23 HOH HOH . D 4 HOH A 26 926 37 HOH HOH . D 4 HOH A 27 927 24 HOH HOH . D 4 HOH A 28 928 43 HOH HOH . D 4 HOH A 29 929 35 HOH HOH . D 4 HOH A 30 930 21 HOH HOH . D 4 HOH A 31 931 28 HOH HOH . D 4 HOH A 32 932 25 HOH HOH . D 4 HOH A 33 933 40 HOH HOH . D 4 HOH A 34 934 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 HRZ . . . C 3 -18.754 -17.744 -16.434 1 67.58 ? C2 HRZ 802 A 1 HETATM 2 C C3 HRZ . . . C 3 -19.262 -19.027 -16.122 1 66.5 ? C3 HRZ 802 A 1 HETATM 3 C C5 HRZ . . . C 3 -19.331 -19.44 -18.482 1 62.5 ? C5 HRZ 802 A 1 HETATM 4 C C6 HRZ . . . C 3 -18.809 -18.155 -18.678 1 61.23 ? C6 HRZ 802 A 1 HETATM 5 O O1 HRZ . . . C 3 -18.493 -16.93 -15.362 1 66.79 ? O1 HRZ 802 A 1 HETATM 6 C C4 HRZ . . . C 3 -19.55 -19.878 -17.178 1 61.49 ? C4 HRZ 802 A 1 HETATM 7 N N7 HRZ . . . C 3 -18.511 -17.275 -17.695 1 65.3 ? N7 HRZ 802 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 7 #