data_7PYD # _model_server_result.job_id o9NYBm8H8k8pF5aN1czq2Q _model_server_result.datetime_utc '2024-11-15 06:07:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pyd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7PYD # _exptl.entry_id 7PYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PYD _cell.length_a 125.63 _cell.length_b 125.63 _cell.length_c 125.63 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 BGC BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BGC BGC C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BGC BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC B 1 BGC 2 n B BGC 2 B 2 BGC B 402 BGC 2 n B BGC 3 B 3 BGC B 403 BGC 2 n B BGC 4 B 4 BGC B 404 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 41 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A C HIC 1 A HIC 1 1_555 A N THR 2 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A ND2 ASN 33 A ASN 33 1_555 D C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 B O4 BGC . B BGC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale4 B O4 BGC . B BGC 2 1_555 B C1 BGC . B BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale5 B O4 BGC . B BGC 3 1_555 B C1 BGC . B BGC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? metalc ? metalc1 A N HIC 1 A HIC 1 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc2 A ND1 HIC 1 A HIC 1 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc3 A NE2 HIS 78 A HIS 78 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc4 A OH TYR 164 A TYR 164 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc5 C CU CU . A CU 301 1_555 E CL CL . A CL 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7PYD _atom_sites.fract_transf_matrix[1][1] 0.00796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CU A 1 301 301 CU CU . D 4 NAG A 1 302 401 NAG NAG . E 5 CL A 1 303 1 CL CL . F 6 HOH A 1 401 33 HOH HOH . F 6 HOH A 2 402 49 HOH HOH . F 6 HOH A 3 403 136 HOH HOH . F 6 HOH A 4 404 108 HOH HOH . F 6 HOH A 5 405 24 HOH HOH . F 6 HOH A 6 406 122 HOH HOH . F 6 HOH A 7 407 104 HOH HOH . F 6 HOH A 8 408 137 HOH HOH . F 6 HOH A 9 409 57 HOH HOH . F 6 HOH A 10 410 37 HOH HOH . F 6 HOH A 11 411 34 HOH HOH . F 6 HOH A 12 412 19 HOH HOH . F 6 HOH A 13 413 36 HOH HOH . F 6 HOH A 14 414 4 HOH HOH . F 6 HOH A 15 415 105 HOH HOH . F 6 HOH A 16 416 25 HOH HOH . F 6 HOH A 17 417 21 HOH HOH . F 6 HOH A 18 418 18 HOH HOH . F 6 HOH A 19 419 69 HOH HOH . F 6 HOH A 20 420 80 HOH HOH . F 6 HOH A 21 421 120 HOH HOH . F 6 HOH A 22 422 83 HOH HOH . F 6 HOH A 23 423 16 HOH HOH . F 6 HOH A 24 424 28 HOH HOH . F 6 HOH A 25 425 132 HOH HOH . F 6 HOH A 26 426 17 HOH HOH . F 6 HOH A 27 427 55 HOH HOH . F 6 HOH A 28 428 72 HOH HOH . F 6 HOH A 29 429 32 HOH HOH . F 6 HOH A 30 430 30 HOH HOH . F 6 HOH A 31 431 38 HOH HOH . F 6 HOH A 32 432 14 HOH HOH . F 6 HOH A 33 433 101 HOH HOH . F 6 HOH A 34 434 123 HOH HOH . F 6 HOH A 35 435 125 HOH HOH . F 6 HOH A 36 436 3 HOH HOH . F 6 HOH A 37 437 45 HOH HOH . F 6 HOH A 38 438 84 HOH HOH . F 6 HOH A 39 439 6 HOH HOH . F 6 HOH A 40 440 26 HOH HOH . F 6 HOH A 41 441 70 HOH HOH . F 6 HOH A 42 442 13 HOH HOH . F 6 HOH A 43 443 44 HOH HOH . F 6 HOH A 44 444 82 HOH HOH . F 6 HOH A 45 445 61 HOH HOH . F 6 HOH A 46 446 99 HOH HOH . F 6 HOH A 47 447 20 HOH HOH . F 6 HOH A 48 448 76 HOH HOH . F 6 HOH A 49 449 75 HOH HOH . F 6 HOH A 50 450 51 HOH HOH . F 6 HOH A 51 451 110 HOH HOH . F 6 HOH A 52 452 53 HOH HOH . F 6 HOH A 53 453 7 HOH HOH . F 6 HOH A 54 454 89 HOH HOH . F 6 HOH A 55 455 39 HOH HOH . F 6 HOH A 56 456 8 HOH HOH . F 6 HOH A 57 457 139 HOH HOH . F 6 HOH A 58 458 81 HOH HOH . F 6 HOH A 59 459 41 HOH HOH . F 6 HOH A 60 460 128 HOH HOH . F 6 HOH A 61 461 15 HOH HOH . F 6 HOH A 62 462 54 HOH HOH . F 6 HOH A 63 463 95 HOH HOH . F 6 HOH A 64 464 115 HOH HOH . F 6 HOH A 65 465 35 HOH HOH . F 6 HOH A 66 466 56 HOH HOH . F 6 HOH A 67 467 9 HOH HOH . F 6 HOH A 68 468 91 HOH HOH . F 6 HOH A 69 469 62 HOH HOH . F 6 HOH A 70 470 46 HOH HOH . F 6 HOH A 71 471 11 HOH HOH . F 6 HOH A 72 472 127 HOH HOH . F 6 HOH A 73 473 27 HOH HOH . F 6 HOH A 74 474 5 HOH HOH . F 6 HOH A 75 475 92 HOH HOH . F 6 HOH A 76 476 48 HOH HOH . F 6 HOH A 77 477 87 HOH HOH . F 6 HOH A 78 478 2 HOH HOH . F 6 HOH A 79 479 10 HOH HOH . F 6 HOH A 80 480 58 HOH HOH . F 6 HOH A 81 481 12 HOH HOH . F 6 HOH A 82 482 114 HOH HOH . F 6 HOH A 83 483 63 HOH HOH . F 6 HOH A 84 484 43 HOH HOH . F 6 HOH A 85 485 90 HOH HOH . F 6 HOH A 86 486 67 HOH HOH . F 6 HOH A 87 487 40 HOH HOH . F 6 HOH A 88 488 133 HOH HOH . F 6 HOH A 89 489 77 HOH HOH . F 6 HOH A 90 490 47 HOH HOH . F 6 HOH A 91 491 23 HOH HOH . F 6 HOH A 92 492 121 HOH HOH . F 6 HOH A 93 493 100 HOH HOH . F 6 HOH A 94 494 140 HOH HOH . F 6 HOH A 95 495 31 HOH HOH . F 6 HOH A 96 496 131 HOH HOH . F 6 HOH A 97 497 74 HOH HOH . F 6 HOH A 98 498 134 HOH HOH . F 6 HOH A 99 499 86 HOH HOH . F 6 HOH A 100 500 112 HOH HOH . F 6 HOH A 101 501 97 HOH HOH . F 6 HOH A 102 502 124 HOH HOH . F 6 HOH A 103 503 102 HOH HOH . F 6 HOH A 104 504 64 HOH HOH . F 6 HOH A 105 505 29 HOH HOH . F 6 HOH A 106 506 107 HOH HOH . F 6 HOH A 107 507 138 HOH HOH . F 6 HOH A 108 508 96 HOH HOH . F 6 HOH A 109 509 68 HOH HOH . F 6 HOH A 110 510 59 HOH HOH . F 6 HOH A 111 511 129 HOH HOH . F 6 HOH A 112 512 88 HOH HOH . F 6 HOH A 113 513 22 HOH HOH . F 6 HOH A 114 514 103 HOH HOH . F 6 HOH A 115 515 65 HOH HOH . F 6 HOH A 116 516 50 HOH HOH . F 6 HOH A 117 517 66 HOH HOH . F 6 HOH A 118 518 116 HOH HOH . F 6 HOH A 119 519 117 HOH HOH . F 6 HOH A 120 520 85 HOH HOH . F 6 HOH A 121 521 42 HOH HOH . F 6 HOH A 122 522 130 HOH HOH . F 6 HOH A 123 523 79 HOH HOH . F 6 HOH A 124 524 106 HOH HOH . F 6 HOH A 125 525 71 HOH HOH . F 6 HOH A 126 526 93 HOH HOH . F 6 HOH A 127 527 126 HOH HOH . F 6 HOH A 128 528 52 HOH HOH . F 6 HOH A 129 529 60 HOH HOH . F 6 HOH A 130 530 119 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -7.12 _atom_site.Cartn_y -3.419 _atom_site.Cartn_z 19.349 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.36 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #