data_7PYE # _model_server_result.job_id wmpNxwi5QkNF8oYzv5ZjEQ _model_server_result.datetime_utc '2024-11-15 05:40:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7PYE # _exptl.entry_id 7PYE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PYE _cell.length_a 125.65 _cell.length_b 125.65 _cell.length_c 125.65 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 BGC BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BGC BGC C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BGC BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC B 1 BGC 2 n B BGC 2 B 2 BGC B 402 BGC 2 n B BGC 3 B 3 BGC B 403 BGC 2 n B BGC 4 B 4 BGC B 404 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 41 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 A C HIC 1 A HIC 1 1_555 A N THR 2 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 A ND2 ASN 33 A ASN 33 1_555 D C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale3 B O4 BGC . B BGC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 B O4 BGC . B BGC 2 1_555 B C1 BGC . B BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale5 B O4 BGC . B BGC 3 1_555 B C1 BGC . B BGC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? metalc ? metalc1 A N HIC 1 A HIC 1 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc2 A ND1 HIC 1 A HIC 1 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc3 A NE2 HIS 78 A HIS 78 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc4 A OH TYR 164 A TYR 164 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 284 n n C1 O1 NAG sing 285 n n C1 O5 NAG sing 286 n n C1 H1 NAG sing 287 n n C2 C3 NAG sing 288 n n C2 N2 NAG sing 289 n n C2 H2 NAG sing 290 n n C3 C4 NAG sing 291 n n C3 O3 NAG sing 292 n n C3 H3 NAG sing 293 n n C4 C5 NAG sing 294 n n C4 O4 NAG sing 295 n n C4 H4 NAG sing 296 n n C5 C6 NAG sing 297 n n C5 O5 NAG sing 298 n n C5 H5 NAG sing 299 n n C6 O6 NAG sing 300 n n C6 H61 NAG sing 301 n n C6 H62 NAG sing 302 n n C7 C8 NAG sing 303 n n C7 N2 NAG sing 304 n n C7 O7 NAG doub 305 n n C8 H81 NAG sing 306 n n C8 H82 NAG sing 307 n n C8 H83 NAG sing 308 n n N2 HN2 NAG sing 309 n n O1 HO1 NAG sing 310 n n O3 HO3 NAG sing 311 n n O4 HO4 NAG sing 312 n n O6 HO6 NAG sing 313 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7PYE _atom_sites.fract_transf_matrix[1][1] 0.007959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CU A 1 301 301 CU CU . D 4 NAG A 1 302 401 NAG NAG . E 5 CL A 1 303 1 CL CL . F 6 HOH A 1 401 136 HOH HOH . F 6 HOH A 2 402 33 HOH HOH . F 6 HOH A 3 403 104 HOH HOH . F 6 HOH A 4 404 49 HOH HOH . F 6 HOH A 5 405 24 HOH HOH . F 6 HOH A 6 406 105 HOH HOH . F 6 HOH A 7 407 108 HOH HOH . F 6 HOH A 8 408 122 HOH HOH . F 6 HOH A 9 409 34 HOH HOH . F 6 HOH A 10 410 25 HOH HOH . F 6 HOH A 11 411 57 HOH HOH . F 6 HOH A 12 412 36 HOH HOH . F 6 HOH A 13 413 69 HOH HOH . F 6 HOH A 14 414 80 HOH HOH . F 6 HOH A 15 415 120 HOH HOH . F 6 HOH A 16 416 16 HOH HOH . F 6 HOH A 17 417 19 HOH HOH . F 6 HOH A 18 418 72 HOH HOH . F 6 HOH A 19 419 4 HOH HOH . F 6 HOH A 20 420 21 HOH HOH . F 6 HOH A 21 421 110 HOH HOH . F 6 HOH A 22 422 83 HOH HOH . F 6 HOH A 23 423 32 HOH HOH . F 6 HOH A 24 424 91 HOH HOH . F 6 HOH A 25 425 26 HOH HOH . F 6 HOH A 26 426 28 HOH HOH . F 6 HOH A 27 427 18 HOH HOH . F 6 HOH A 28 428 37 HOH HOH . F 6 HOH A 29 429 132 HOH HOH . F 6 HOH A 30 430 6 HOH HOH . F 6 HOH A 31 431 84 HOH HOH . F 6 HOH A 32 432 17 HOH HOH . F 6 HOH A 33 433 123 HOH HOH . F 6 HOH A 34 434 125 HOH HOH . F 6 HOH A 35 435 51 HOH HOH . F 6 HOH A 36 436 14 HOH HOH . F 6 HOH A 37 437 45 HOH HOH . F 6 HOH A 38 438 44 HOH HOH . F 6 HOH A 39 439 30 HOH HOH . F 6 HOH A 40 440 99 HOH HOH . F 6 HOH A 41 441 128 HOH HOH . F 6 HOH A 42 442 115 HOH HOH . F 6 HOH A 43 443 101 HOH HOH . F 6 HOH A 44 444 137 HOH HOH . F 6 HOH A 45 445 53 HOH HOH . F 6 HOH A 46 446 41 HOH HOH . F 6 HOH A 47 447 70 HOH HOH . F 6 HOH A 48 448 7 HOH HOH . F 6 HOH A 49 449 55 HOH HOH . F 6 HOH A 50 450 13 HOH HOH . F 6 HOH A 51 451 20 HOH HOH . F 6 HOH A 52 452 46 HOH HOH . F 6 HOH A 53 453 81 HOH HOH . F 6 HOH A 54 454 15 HOH HOH . F 6 HOH A 55 455 82 HOH HOH . F 6 HOH A 56 456 127 HOH HOH . F 6 HOH A 57 457 39 HOH HOH . F 6 HOH A 58 458 3 HOH HOH . F 6 HOH A 59 459 11 HOH HOH . F 6 HOH A 60 460 92 HOH HOH . F 6 HOH A 61 461 56 HOH HOH . F 6 HOH A 62 462 89 HOH HOH . F 6 HOH A 63 463 38 HOH HOH . F 6 HOH A 64 464 35 HOH HOH . F 6 HOH A 65 465 8 HOH HOH . F 6 HOH A 66 466 63 HOH HOH . F 6 HOH A 67 467 95 HOH HOH . F 6 HOH A 68 468 75 HOH HOH . F 6 HOH A 69 469 67 HOH HOH . F 6 HOH A 70 470 54 HOH HOH . F 6 HOH A 71 471 76 HOH HOH . F 6 HOH A 72 472 139 HOH HOH . F 6 HOH A 73 473 48 HOH HOH . F 6 HOH A 74 474 114 HOH HOH . F 6 HOH A 75 475 27 HOH HOH . F 6 HOH A 76 476 62 HOH HOH . F 6 HOH A 77 477 9 HOH HOH . F 6 HOH A 78 478 61 HOH HOH . F 6 HOH A 79 479 100 HOH HOH . F 6 HOH A 80 480 5 HOH HOH . F 6 HOH A 81 481 40 HOH HOH . F 6 HOH A 82 482 121 HOH HOH . F 6 HOH A 83 483 12 HOH HOH . F 6 HOH A 84 484 90 HOH HOH . F 6 HOH A 85 485 2 HOH HOH . F 6 HOH A 86 486 97 HOH HOH . F 6 HOH A 87 487 31 HOH HOH . F 6 HOH A 88 488 77 HOH HOH . F 6 HOH A 89 489 10 HOH HOH . F 6 HOH A 90 490 43 HOH HOH . F 6 HOH A 91 491 134 HOH HOH . F 6 HOH A 92 492 87 HOH HOH . F 6 HOH A 93 493 23 HOH HOH . F 6 HOH A 94 494 131 HOH HOH . F 6 HOH A 95 495 47 HOH HOH . F 6 HOH A 96 496 74 HOH HOH . F 6 HOH A 97 497 86 HOH HOH . F 6 HOH A 98 498 112 HOH HOH . F 6 HOH A 99 499 58 HOH HOH . F 6 HOH A 100 500 133 HOH HOH . F 6 HOH A 101 501 140 HOH HOH . F 6 HOH A 102 502 102 HOH HOH . F 6 HOH A 103 503 64 HOH HOH . F 6 HOH A 104 504 29 HOH HOH . F 6 HOH A 105 505 124 HOH HOH . F 6 HOH A 106 506 103 HOH HOH . F 6 HOH A 107 507 68 HOH HOH . F 6 HOH A 108 508 96 HOH HOH . F 6 HOH A 109 509 88 HOH HOH . F 6 HOH A 110 510 59 HOH HOH . F 6 HOH A 111 511 138 HOH HOH . F 6 HOH A 112 512 22 HOH HOH . F 6 HOH A 113 513 65 HOH HOH . F 6 HOH A 114 514 66 HOH HOH . F 6 HOH A 115 515 50 HOH HOH . F 6 HOH A 116 516 117 HOH HOH . F 6 HOH A 117 517 107 HOH HOH . F 6 HOH A 118 518 116 HOH HOH . F 6 HOH A 119 519 129 HOH HOH . F 6 HOH A 120 520 85 HOH HOH . F 6 HOH A 121 521 79 HOH HOH . F 6 HOH A 122 522 42 HOH HOH . F 6 HOH A 123 523 130 HOH HOH . F 6 HOH A 124 524 93 HOH HOH . F 6 HOH A 125 525 106 HOH HOH . F 6 HOH A 126 526 71 HOH HOH . F 6 HOH A 127 527 126 HOH HOH . F 6 HOH A 128 528 60 HOH HOH . F 6 HOH A 129 529 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -24.704 -5.519 12.162 1 54.44 ? C1 NAG 302 A 1 HETATM 2 C C2 NAG . . . D 4 -25.297 -4.121 12.066 1 58.23 ? C2 NAG 302 A 1 HETATM 3 C C3 NAG . . . D 4 -26.552 -4.067 11.198 1 59.75 ? C3 NAG 302 A 1 HETATM 4 C C4 NAG . . . D 4 -26.398 -4.951 9.957 1 56.85 ? C4 NAG 302 A 1 HETATM 5 C C5 NAG . . . D 4 -25.929 -6.351 10.304 1 54.76 ? C5 NAG 302 A 1 HETATM 6 C C6 NAG . . . D 4 -25.816 -7.251 9.065 1 53.76 ? C6 NAG 302 A 1 HETATM 7 C C7 NAG . . . D 4 -25.178 -2.621 14.001 1 67.2 ? C7 NAG 302 A 1 HETATM 8 C C8 NAG . . . D 4 -25.434 -2.572 15.485 1 69.93 ? C8 NAG 302 A 1 HETATM 9 N N2 NAG . . . D 4 -25.573 -3.755 13.433 1 64.92 ? N2 NAG 302 A 1 HETATM 10 O O3 NAG . . . D 4 -26.796 -2.723 10.736 1 58.11 ? O3 NAG 302 A 1 HETATM 11 O O4 NAG . . . D 4 -27.642 -5.008 9.267 1 58.26 ? O4 NAG 302 A 1 HETATM 12 O O5 NAG . . . D 4 -24.648 -6.179 10.895 1 56.42 ? O5 NAG 302 A 1 HETATM 13 O O6 NAG . . . D 4 -24.866 -6.713 8.125 1 46.11 ? O6 NAG 302 A 1 HETATM 14 O O7 NAG . . . D 4 -24.641 -1.723 13.375 1 61.56 ? O7 NAG 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #