data_7PYI
#
_model_server_result.job_id            KdqheqxNGTPYtzScoqA-2w 
_model_server_result.datetime_utc      '2024-11-25 15:28:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pyi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    7PYI 
#
_exptl.entry_id    7PYI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PYI 
_cell.length_a            126.01 
_cell.length_b            126.01 
_cell.length_c            126.01 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PYI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        213 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 BGC BGC C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BGC BGC C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 BGC BGC C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B BGC 1 B 1 BGC B 1 BGC 
2 n B BGC 2 B 2 BGC B 402 BGC 
2 n B BGC 3 B 3 BGC B 403 BGC 
2 n B BGC 4 B 4 BGC B 404 BGC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 A CYS 41 1_555 A SG CYS 167 A CYS 167 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.066 ? 
covale ? covale1 A C HIC 1 A HIC 1 1_555 A N THR 2 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A ND2 ASN 33 A ASN 33 1_555 D C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale3 B O4 BGC . B BGC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale4 B O4 BGC . B BGC 2 1_555 B C1 BGC . B BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale5 B O4 BGC . B BGC 3 1_555 B C1 BGC . B BGC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
metalc ? metalc1 A N HIC 1 A HIC 1 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc2 A ND1 HIC 1 A HIC 1 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? 
metalc ? metalc3 A NE2 HIS 78 A HIS 78 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc4 A OH TYR 164 A TYR 164 1_555 C CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 284 n n 
C1 O1 NAG sing 285 n n 
C1 O5 NAG sing 286 n n 
C1 H1 NAG sing 287 n n 
C2 C3 NAG sing 288 n n 
C2 N2 NAG sing 289 n n 
C2 H2 NAG sing 290 n n 
C3 C4 NAG sing 291 n n 
C3 O3 NAG sing 292 n n 
C3 H3 NAG sing 293 n n 
C4 C5 NAG sing 294 n n 
C4 O4 NAG sing 295 n n 
C4 H4 NAG sing 296 n n 
C5 C6 NAG sing 297 n n 
C5 O5 NAG sing 298 n n 
C5 H5 NAG sing 299 n n 
C6 O6 NAG sing 300 n n 
C6 H61 NAG sing 301 n n 
C6 H62 NAG sing 302 n n 
C7 C8 NAG sing 303 n n 
C7 N2 NAG sing 304 n n 
C7 O7 NAG doub 305 n n 
C8 H81 NAG sing 306 n n 
C8 H82 NAG sing 307 n n 
C8 H83 NAG sing 308 n n 
N2 HN2 NAG sing 309 n n 
O1 HO1 NAG sing 310 n n 
O3 HO3 NAG sing 311 n n 
O4 HO4 NAG sing 312 n n 
O6 HO6 NAG sing 313 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7PYI 
_atom_sites.fract_transf_matrix[1][1]    0.007936 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007936 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007936 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CU A 1 301 301 CU CU . 
D 4 NAG A 1 302 401 NAG NAG . 
E 5 CL A 1 303 1 CL CL . 
F 6 HOH A 1 401 22 HOH HOH . 
F 6 HOH A 2 402 11 HOH HOH . 
F 6 HOH A 3 403 12 HOH HOH . 
F 6 HOH A 4 404 48 HOH HOH . 
F 6 HOH A 5 405 21 HOH HOH . 
F 6 HOH A 6 406 10 HOH HOH . 
F 6 HOH A 7 407 58 HOH HOH . 
F 6 HOH A 8 408 39 HOH HOH . 
F 6 HOH A 9 409 6 HOH HOH . 
F 6 HOH A 10 410 8 HOH HOH . 
F 6 HOH A 11 411 17 HOH HOH . 
F 6 HOH A 12 412 49 HOH HOH . 
F 6 HOH A 13 413 27 HOH HOH . 
F 6 HOH A 14 414 37 HOH HOH . 
F 6 HOH A 15 415 33 HOH HOH . 
F 6 HOH A 16 416 68 HOH HOH . 
F 6 HOH A 17 417 3 HOH HOH . 
F 6 HOH A 18 418 42 HOH HOH . 
F 6 HOH A 19 419 4 HOH HOH . 
F 6 HOH A 20 420 28 HOH HOH . 
F 6 HOH A 21 421 52 HOH HOH . 
F 6 HOH A 22 422 18 HOH HOH . 
F 6 HOH A 23 423 66 HOH HOH . 
F 6 HOH A 24 424 5 HOH HOH . 
F 6 HOH A 25 425 47 HOH HOH . 
F 6 HOH A 26 426 9 HOH HOH . 
F 6 HOH A 27 427 25 HOH HOH . 
F 6 HOH A 28 428 20 HOH HOH . 
F 6 HOH A 29 429 16 HOH HOH . 
F 6 HOH A 30 430 26 HOH HOH . 
F 6 HOH A 31 431 2 HOH HOH . 
F 6 HOH A 32 432 7 HOH HOH . 
F 6 HOH A 33 433 44 HOH HOH . 
F 6 HOH A 34 434 50 HOH HOH . 
F 6 HOH A 35 435 14 HOH HOH . 
F 6 HOH A 36 436 23 HOH HOH . 
F 6 HOH A 37 437 65 HOH HOH . 
F 6 HOH A 38 438 31 HOH HOH . 
F 6 HOH A 39 439 29 HOH HOH . 
F 6 HOH A 40 440 1 HOH HOH . 
F 6 HOH A 41 441 43 HOH HOH . 
F 6 HOH A 42 442 59 HOH HOH . 
F 6 HOH A 43 443 45 HOH HOH . 
F 6 HOH A 44 444 41 HOH HOH . 
F 6 HOH A 45 445 67 HOH HOH . 
F 6 HOH A 46 446 19 HOH HOH . 
F 6 HOH A 47 447 32 HOH HOH . 
F 6 HOH A 48 448 57 HOH HOH . 
F 6 HOH A 49 449 36 HOH HOH . 
F 6 HOH A 50 450 62 HOH HOH . 
F 6 HOH A 51 451 64 HOH HOH . 
F 6 HOH A 52 452 54 HOH HOH . 
F 6 HOH A 53 453 46 HOH HOH . 
F 6 HOH A 54 454 51 HOH HOH . 
F 6 HOH A 55 455 60 HOH HOH . 
F 6 HOH A 56 456 24 HOH HOH . 
F 6 HOH A 57 457 38 HOH HOH . 
F 6 HOH A 58 458 53 HOH HOH . 
F 6 HOH A 59 459 55 HOH HOH . 
F 6 HOH A 60 460 61 HOH HOH . 
F 6 HOH A 61 461 15 HOH HOH . 
F 6 HOH A 62 462 56 HOH HOH . 
F 6 HOH A 63 463 30 HOH HOH . 
F 6 HOH A 64 464 63 HOH HOH . 
F 6 HOH A 65 465 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 -24.696 -5.548 12.36 1 62.13 ? C1 NAG 302 A 1 
HETATM 2 C C2 NAG . . . D 4 -25.408 -4.232 12.286 1 62.34 ? C2 NAG 302 A 1 
HETATM 3 C C3 NAG . . . D 4 -26.74 -4.456 11.583 1 64.94 ? C3 NAG 302 A 1 
HETATM 4 C C4 NAG . . . D 4 -26.493 -5.124 10.234 1 67.14 ? C4 NAG 302 A 1 
HETATM 5 C C5 NAG . . . D 4 -25.913 -6.501 10.514 1 68.74 ? C5 NAG 302 A 1 
HETATM 6 C C6 NAG . . . D 4 -25.858 -7.409 9.277 1 65.27 ? C6 NAG 302 A 1 
HETATM 7 C C7 NAG . . . D 4 -25.102 -2.502 14.018 1 69.23 ? C7 NAG 302 A 1 
HETATM 8 C C8 NAG . . . D 4 -25.323 -2.187 15.471 1 71.83 ? C8 NAG 302 A 1 
HETATM 9 N N2 NAG . . . D 4 -25.548 -3.708 13.635 1 69.29 ? N2 NAG 302 A 1 
HETATM 10 O O3 NAG . . . D 4 -27.368 -3.204 11.327 1 62.58 ? O3 NAG 302 A 1 
HETATM 11 O O4 NAG . . . D 4 -27.667 -5.133 9.425 1 73.02 ? O4 NAG 302 A 1 
HETATM 12 O O5 NAG . . . D 4 -24.611 -6.159 11.043 1 64.49 ? O5 NAG 302 A 1 
HETATM 13 O O6 NAG . . . D 4 -25.17 -6.733 8.207 1 58.13 ? O6 NAG 302 A 1 
HETATM 14 O O7 NAG . . . D 4 -24.532 -1.737 13.256 1 62.49 ? O7 NAG 302 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           64 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#