data_7PZ1 # _model_server_result.job_id tY8L-xltOSgkVyHI97WvMw _model_server_result.datetime_utc '2024-10-15 11:22:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7pz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 7PZ1 # _exptl.entry_id 7PZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.336 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-bromanyl-2-oxidanylidene-3~{H}-benzimidazol-1-yl)-~{N}-(3-methoxy-4-methyl-phenyl)piperidine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7PZ1 _cell.length_a 81.191 _cell.length_b 81.827 _cell.length_c 169.555 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7PZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H 1 1 B,F,I 2 1 C,G,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 269 AAA HIS 276 1_555 E NI NI . AAA NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A NE2 HIS 275 AAA HIS 282 1_555 E NI NI . AAA NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 E NI NI . AAA NI 402 1_555 B NE2 HIS 269 BBB HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc4 E NI NI . AAA NI 402 1_555 B NE2 HIS 275 BBB HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc5 E NI NI . AAA NI 402 1_555 C NE2 HIS 269 CCC HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc6 E NI NI . AAA NI 402 1_555 C NE2 HIS 275 CCC HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? # _chem_comp.formula 'C21 H23 Br N4 O3' _chem_comp.formula_weight 459.336 _chem_comp.id 8HA _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-bromanyl-2-oxidanylidene-3~{H}-benzimidazol-1-yl)-~{N}-(3-methoxy-4-methyl-phenyl)piperidine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR1 C20 8HA sing 1 n n N23 C22 8HA sing 2 n n N23 C24 8HA sing 3 n n C20 C22 8HA doub 4 n y C20 C19 8HA sing 5 n y C22 C16 8HA sing 6 n y O25 C24 8HA doub 7 n n C24 N15 8HA sing 8 n n C19 C18 8HA doub 9 n y C16 N15 8HA sing 10 n n C16 C17 8HA doub 11 n y N15 C12 8HA sing 12 n n C18 C17 8HA sing 13 n y C11 C12 8HA sing 14 n n C11 C10 8HA sing 15 n n C12 C13 8HA sing 16 n n C10 N09 8HA sing 17 n n C13 C14 8HA sing 18 n n N09 C14 8HA sing 19 n n N09 C07 8HA sing 20 n n O08 C07 8HA doub 21 n n C07 N06 8HA sing 22 n n N06 C05 8HA sing 23 n n C05 C26 8HA doub 24 n y C05 C04 8HA sing 25 n y C26 C27 8HA sing 26 n y C04 C03 8HA doub 27 n y C01 O02 8HA sing 28 n n C27 C28 8HA doub 29 n y C03 C28 8HA sing 30 n y C03 O02 8HA sing 31 n n C28 C29 8HA sing 32 n n C10 H1 8HA sing 33 n n C10 H2 8HA sing 34 n n C13 H3 8HA sing 35 n n C13 H4 8HA sing 36 n n C17 H5 8HA sing 37 n n C26 H6 8HA sing 38 n n C01 H7 8HA sing 39 n n C01 H8 8HA sing 40 n n C01 H9 8HA sing 41 n n C04 H10 8HA sing 42 n n N06 H11 8HA sing 43 n n C11 H12 8HA sing 44 n n C11 H13 8HA sing 45 n n C12 H14 8HA sing 46 n n C14 H15 8HA sing 47 n n C14 H16 8HA sing 48 n n C18 H17 8HA sing 49 n n C19 H18 8HA sing 50 n n N23 H19 8HA sing 51 n n C27 H20 8HA sing 52 n n C29 H21 8HA sing 53 n n C29 H22 8HA sing 54 n n C29 H23 8HA sing 55 n n # _atom_sites.entry_id 7PZ1 _atom_sites.fract_transf_matrix[1][1] 0.012317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 8HA AAA 1 401 401 8HA LIG . E 3 NI AAA 1 402 1 NI NI . F 4 EDO BBB 1 401 402 EDO EDO . G 5 GOL CCC 1 401 401 GOL GOL . H 6 HOH AAA 1 501 46 HOH HOH . H 6 HOH AAA 2 502 4 HOH HOH . H 6 HOH AAA 3 503 13 HOH HOH . H 6 HOH AAA 4 504 21 HOH HOH . H 6 HOH AAA 5 505 9 HOH HOH . H 6 HOH AAA 6 506 2 HOH HOH . H 6 HOH AAA 7 507 30 HOH HOH . H 6 HOH AAA 8 508 1 HOH HOH . H 6 HOH AAA 9 509 6 HOH HOH . H 6 HOH AAA 10 510 17 HOH HOH . H 6 HOH AAA 11 511 5 HOH HOH . H 6 HOH AAA 12 512 27 HOH HOH . H 6 HOH AAA 13 513 12 HOH HOH . H 6 HOH AAA 14 514 74 HOH HOH . H 6 HOH AAA 15 515 20 HOH HOH . H 6 HOH AAA 16 516 10 HOH HOH . H 6 HOH AAA 17 517 25 HOH HOH . H 6 HOH AAA 18 518 72 HOH HOH . H 6 HOH AAA 19 519 15 HOH HOH . H 6 HOH AAA 20 520 19 HOH HOH . H 6 HOH AAA 21 521 44 HOH HOH . H 6 HOH AAA 22 522 22 HOH HOH . H 6 HOH AAA 23 523 48 HOH HOH . H 6 HOH AAA 24 524 16 HOH HOH . H 6 HOH AAA 25 525 7 HOH HOH . H 6 HOH AAA 26 526 45 HOH HOH . H 6 HOH AAA 27 527 18 HOH HOH . H 6 HOH AAA 28 528 8 HOH HOH . H 6 HOH AAA 29 529 75 HOH HOH . H 6 HOH AAA 30 530 11 HOH HOH . H 6 HOH AAA 31 531 14 HOH HOH . H 6 HOH AAA 32 532 47 HOH HOH . H 6 HOH AAA 33 533 28 HOH HOH . H 6 HOH AAA 34 534 3 HOH HOH . I 6 HOH BBB 1 501 43 HOH HOH . I 6 HOH BBB 2 502 54 HOH HOH . I 6 HOH BBB 3 503 61 HOH HOH . I 6 HOH BBB 4 504 49 HOH HOH . I 6 HOH BBB 5 505 51 HOH HOH . I 6 HOH BBB 6 506 37 HOH HOH . I 6 HOH BBB 7 507 34 HOH HOH . I 6 HOH BBB 8 508 41 HOH HOH . I 6 HOH BBB 9 509 55 HOH HOH . I 6 HOH BBB 10 510 59 HOH HOH . I 6 HOH BBB 11 511 57 HOH HOH . I 6 HOH BBB 12 512 52 HOH HOH . I 6 HOH BBB 13 513 26 HOH HOH . I 6 HOH BBB 14 514 64 HOH HOH . I 6 HOH BBB 15 515 33 HOH HOH . I 6 HOH BBB 16 516 40 HOH HOH . I 6 HOH BBB 17 517 38 HOH HOH . I 6 HOH BBB 18 518 39 HOH HOH . I 6 HOH BBB 19 519 62 HOH HOH . I 6 HOH BBB 20 520 42 HOH HOH . I 6 HOH BBB 21 521 36 HOH HOH . I 6 HOH BBB 22 522 58 HOH HOH . I 6 HOH BBB 23 523 56 HOH HOH . I 6 HOH BBB 24 524 29 HOH HOH . I 6 HOH BBB 25 525 60 HOH HOH . I 6 HOH BBB 26 526 63 HOH HOH . I 6 HOH BBB 27 527 73 HOH HOH . I 6 HOH BBB 28 528 32 HOH HOH . I 6 HOH BBB 29 529 35 HOH HOH . I 6 HOH BBB 30 530 53 HOH HOH . I 6 HOH BBB 31 531 50 HOH HOH . J 6 HOH CCC 1 501 31 HOH HOH . J 6 HOH CCC 2 502 68 HOH HOH . J 6 HOH CCC 3 503 67 HOH HOH . J 6 HOH CCC 4 504 70 HOH HOH . J 6 HOH CCC 5 505 65 HOH HOH . J 6 HOH CCC 6 506 24 HOH HOH . J 6 HOH CCC 7 507 71 HOH HOH . J 6 HOH CCC 8 508 23 HOH HOH . J 6 HOH CCC 9 509 69 HOH HOH . J 6 HOH CCC 10 510 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 8HA . . . D 2 2.551 13.628 27.995 1 97.17 0 C10 8HA 401 AAA 1 HETATM 2 C C13 8HA . . . D 2 5.32 14.558 28.368 1 100.83 0 C13 8HA 401 AAA 1 HETATM 3 C C17 8HA . . . D 2 6.01 11.579 26.391 1 113.28 0 C17 8HA 401 AAA 1 HETATM 4 C C20 8HA . . . D 2 6.926 11.448 23.742 1 118.26 0 C20 8HA 401 AAA 1 HETATM 5 C C22 8HA . . . D 2 6.324 12.652 24.239 1 113.75 0 C22 8HA 401 AAA 1 HETATM 6 C C24 8HA . . . D 2 5.484 14.68 24.554 1 109.87 0 C24 8HA 401 AAA 1 HETATM 7 C C26 8HA . . . D 2 4.038 9.381 31.503 1 82.61 0 C26 8HA 401 AAA 1 HETATM 8 C C28 8HA . . . D 2 5.752 7.917 32.377 1 85.57 0 C28 8HA 401 AAA 1 HETATM 9 C C01 8HA . . . D 2 9.098 9.261 31.72 1 83.31 0 C01 8HA 401 AAA 1 HETATM 10 O O02 8HA . . . D 2 8.107 8.669 32.519 1 82.38 0 O02 8HA 401 AAA 1 HETATM 11 C C03 8HA . . . D 2 6.732 8.925 32.165 1 83.46 0 C03 8HA 401 AAA 1 HETATM 12 C C04 8HA . . . D 2 6.347 10.143 31.632 1 83.55 0 C04 8HA 401 AAA 1 HETATM 13 C C05 8HA . . . D 2 5.013 10.384 31.305 1 84.72 0 C05 8HA 401 AAA 1 HETATM 14 N N06 8HA . . . D 2 4.732 11.708 30.722 1 88.08 0 N06 8HA 401 AAA 1 HETATM 15 C C07 8HA . . . D 2 3.732 11.898 29.656 1 91.77 0 C07 8HA 401 AAA 1 HETATM 16 O O08 8HA . . . D 2 3.076 10.992 29.248 1 90.1 0 O08 8HA 401 AAA 1 HETATM 17 N N09 8HA . . . D 2 3.498 13.246 29.115 1 95.8 0 N09 8HA 401 AAA 1 HETATM 18 C C11 8HA . . . D 2 3.417 13.869 26.736 1 99.83 0 C11 8HA 401 AAA 1 HETATM 19 C C12 8HA . . . D 2 4.722 14.603 26.97 1 103.48 0 C12 8HA 401 AAA 1 HETATM 20 C C14 8HA . . . D 2 4.265 14.468 29.477 1 98.13 0 C14 8HA 401 AAA 1 HETATM 21 N N15 8HA . . . D 2 5.337 14.012 25.71 1 108.54 0 N15 8HA 401 AAA 1 HETATM 22 C C16 8HA . . . D 2 5.878 12.729 25.531 1 111.97 0 C16 8HA 401 AAA 1 HETATM 23 C C18 8HA . . . D 2 6.599 10.397 25.9 1 114.03 0 C18 8HA 401 AAA 1 HETATM 24 C C19 8HA . . . D 2 7.055 10.327 24.589 1 116.11 0 C19 8HA 401 AAA 1 HETATM 25 BR BR1 8HA . . . D 2 7.562 11.348 21.921 1 131.46 0 BR1 8HA 401 AAA 1 HETATM 26 N N23 8HA . . . D 2 6.068 13.881 23.657 1 111.34 0 N23 8HA 401 AAA 1 HETATM 27 O O25 8HA . . . D 2 5.145 15.799 24.346 1 108.86 0 O25 8HA 401 AAA 1 HETATM 28 C C27 8HA . . . D 2 4.427 8.153 32.043 1 84.48 0 C27 8HA 401 AAA 1 HETATM 29 C C29 8HA . . . D 2 6.158 6.581 32.961 1 85.63 0 C29 8HA 401 AAA 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #