data_7PZ1
#
_model_server_result.job_id            uHGAHSAo37TLWx8Owg77iQ 
_model_server_result.datetime_utc      '2025-06-22 19:53:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pz1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":402}' 
#
_entry.id    7PZ1 
#
_exptl.entry_id    7PZ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PZ1 
_cell.length_a            81.191 
_cell.length_b            81.827 
_cell.length_c            169.555 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PZ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,H 1 1 
B,F,I 2 1 
C,G,J 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 269 AAA HIS 276 1_555 E NI NI . AAA NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc2 A NE2 HIS 275 AAA HIS 282 1_555 E NI NI . AAA NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc3 E NI NI . AAA NI 402 1_555 B NE2 HIS 269 BBB HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc4 E NI NI . AAA NI 402 1_555 B NE2 HIS 275 BBB HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc5 E NI NI . AAA NI 402 1_555 C NE2 HIS 269 CCC HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc6 E NI NI . AAA NI 402 1_555 C NE2 HIS 275 CCC HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7PZ1 
_atom_sites.fract_transf_matrix[1][1]    0.012317 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005898 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 8HA AAA 1 401 401 8HA LIG . 
E 3 NI AAA 1 402 1 NI NI . 
F 4 EDO BBB 1 401 402 EDO EDO . 
G 5 GOL CCC 1 401 401 GOL GOL . 
H 6 HOH AAA 1 501 46 HOH HOH . 
H 6 HOH AAA 2 502 4 HOH HOH . 
H 6 HOH AAA 3 503 13 HOH HOH . 
H 6 HOH AAA 4 504 21 HOH HOH . 
H 6 HOH AAA 5 505 9 HOH HOH . 
H 6 HOH AAA 6 506 2 HOH HOH . 
H 6 HOH AAA 7 507 30 HOH HOH . 
H 6 HOH AAA 8 508 1 HOH HOH . 
H 6 HOH AAA 9 509 6 HOH HOH . 
H 6 HOH AAA 10 510 17 HOH HOH . 
H 6 HOH AAA 11 511 5 HOH HOH . 
H 6 HOH AAA 12 512 27 HOH HOH . 
H 6 HOH AAA 13 513 12 HOH HOH . 
H 6 HOH AAA 14 514 74 HOH HOH . 
H 6 HOH AAA 15 515 20 HOH HOH . 
H 6 HOH AAA 16 516 10 HOH HOH . 
H 6 HOH AAA 17 517 25 HOH HOH . 
H 6 HOH AAA 18 518 72 HOH HOH . 
H 6 HOH AAA 19 519 15 HOH HOH . 
H 6 HOH AAA 20 520 19 HOH HOH . 
H 6 HOH AAA 21 521 44 HOH HOH . 
H 6 HOH AAA 22 522 22 HOH HOH . 
H 6 HOH AAA 23 523 48 HOH HOH . 
H 6 HOH AAA 24 524 16 HOH HOH . 
H 6 HOH AAA 25 525 7 HOH HOH . 
H 6 HOH AAA 26 526 45 HOH HOH . 
H 6 HOH AAA 27 527 18 HOH HOH . 
H 6 HOH AAA 28 528 8 HOH HOH . 
H 6 HOH AAA 29 529 75 HOH HOH . 
H 6 HOH AAA 30 530 11 HOH HOH . 
H 6 HOH AAA 31 531 14 HOH HOH . 
H 6 HOH AAA 32 532 47 HOH HOH . 
H 6 HOH AAA 33 533 28 HOH HOH . 
H 6 HOH AAA 34 534 3 HOH HOH . 
I 6 HOH BBB 1 501 43 HOH HOH . 
I 6 HOH BBB 2 502 54 HOH HOH . 
I 6 HOH BBB 3 503 61 HOH HOH . 
I 6 HOH BBB 4 504 49 HOH HOH . 
I 6 HOH BBB 5 505 51 HOH HOH . 
I 6 HOH BBB 6 506 37 HOH HOH . 
I 6 HOH BBB 7 507 34 HOH HOH . 
I 6 HOH BBB 8 508 41 HOH HOH . 
I 6 HOH BBB 9 509 55 HOH HOH . 
I 6 HOH BBB 10 510 59 HOH HOH . 
I 6 HOH BBB 11 511 57 HOH HOH . 
I 6 HOH BBB 12 512 52 HOH HOH . 
I 6 HOH BBB 13 513 26 HOH HOH . 
I 6 HOH BBB 14 514 64 HOH HOH . 
I 6 HOH BBB 15 515 33 HOH HOH . 
I 6 HOH BBB 16 516 40 HOH HOH . 
I 6 HOH BBB 17 517 38 HOH HOH . 
I 6 HOH BBB 18 518 39 HOH HOH . 
I 6 HOH BBB 19 519 62 HOH HOH . 
I 6 HOH BBB 20 520 42 HOH HOH . 
I 6 HOH BBB 21 521 36 HOH HOH . 
I 6 HOH BBB 22 522 58 HOH HOH . 
I 6 HOH BBB 23 523 56 HOH HOH . 
I 6 HOH BBB 24 524 29 HOH HOH . 
I 6 HOH BBB 25 525 60 HOH HOH . 
I 6 HOH BBB 26 526 63 HOH HOH . 
I 6 HOH BBB 27 527 73 HOH HOH . 
I 6 HOH BBB 28 528 32 HOH HOH . 
I 6 HOH BBB 29 529 35 HOH HOH . 
I 6 HOH BBB 30 530 53 HOH HOH . 
I 6 HOH BBB 31 531 50 HOH HOH . 
J 6 HOH CCC 1 501 31 HOH HOH . 
J 6 HOH CCC 2 502 68 HOH HOH . 
J 6 HOH CCC 3 503 67 HOH HOH . 
J 6 HOH CCC 4 504 70 HOH HOH . 
J 6 HOH CCC 5 505 65 HOH HOH . 
J 6 HOH CCC 6 506 24 HOH HOH . 
J 6 HOH CCC 7 507 71 HOH HOH . 
J 6 HOH CCC 8 508 23 HOH HOH . 
J 6 HOH CCC 9 509 69 HOH HOH . 
J 6 HOH CCC 10 510 66 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               0.256 
_atom_site.Cartn_y               -4.204 
_atom_site.Cartn_z               13.329 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        71.59 
_atom_site.pdbx_formal_charge    0 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          AAA 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           359 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#