data_7PZ4
#
_model_server_result.job_id            kr3c5sFGuMEscPdgffedQA 
_model_server_result.datetime_utc      '2024-11-24 09:53:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pz4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    7PZ4 
#
_exptl.entry_id    7PZ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.96 
_cell.angle_gamma         90 
_cell.entry_id            7PZ4 
_cell.length_a            34.45 
_cell.length_b            87.37 
_cell.length_c            37.39 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PZ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 56 A CYS 56 1_555 A SG CYS 178 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf2 A SG CYS 97 A CYS 97 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
covale ? covale1 A C HIC 1 A HIC 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A ND2 ASN 138 A ASN 138 1_555 D C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
metalc ? metalc1 A N HIC 1 A HIC 1 1_555 B CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc2 A ND1 HIC 1 A HIC 1 1_555 B CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc3 A NE2 HIS 86 A HIS 86 1_555 B CU CU . A CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc4 B CU CU . A CU 301 1_555 F O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc5 B CU CU . A CU 301 1_555 F O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 301 n n 
C1 O1 NAG sing 302 n n 
C1 O5 NAG sing 303 n n 
C1 H1 NAG sing 304 n n 
C2 C3 NAG sing 305 n n 
C2 N2 NAG sing 306 n n 
C2 H2 NAG sing 307 n n 
C3 C4 NAG sing 308 n n 
C3 O3 NAG sing 309 n n 
C3 H3 NAG sing 310 n n 
C4 C5 NAG sing 311 n n 
C4 O4 NAG sing 312 n n 
C4 H4 NAG sing 313 n n 
C5 C6 NAG sing 314 n n 
C5 O5 NAG sing 315 n n 
C5 H5 NAG sing 316 n n 
C6 O6 NAG sing 317 n n 
C6 H61 NAG sing 318 n n 
C6 H62 NAG sing 319 n n 
C7 C8 NAG sing 320 n n 
C7 N2 NAG sing 321 n n 
C7 O7 NAG doub 322 n n 
C8 H81 NAG sing 323 n n 
C8 H82 NAG sing 324 n n 
C8 H83 NAG sing 325 n n 
N2 HN2 NAG sing 326 n n 
O1 HO1 NAG sing 327 n n 
O3 HO3 NAG sing 328 n n 
O4 HO4 NAG sing 329 n n 
O6 HO6 NAG sing 330 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7PZ4 
_atom_sites.fract_transf_matrix[1][1]    0.029028 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007757 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011446 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027684 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 301 301 CU CU . 
C 3 AKR A 1 302 401 AKR AKR . 
D 4 NAG A 1 303 501 NAG NAG . 
E 5 EPE A 1 304 601 EPE EPE . 
F 6 HOH A 1 401 65 HOH HOH . 
F 6 HOH A 2 402 13 HOH HOH . 
F 6 HOH A 3 403 60 HOH HOH . 
F 6 HOH A 4 404 27 HOH HOH . 
F 6 HOH A 5 405 55 HOH HOH . 
F 6 HOH A 6 406 44 HOH HOH . 
F 6 HOH A 7 407 61 HOH HOH . 
F 6 HOH A 8 408 49 HOH HOH . 
F 6 HOH A 9 409 43 HOH HOH . 
F 6 HOH A 10 410 22 HOH HOH . 
F 6 HOH A 11 411 12 HOH HOH . 
F 6 HOH A 12 412 25 HOH HOH . 
F 6 HOH A 13 413 2 HOH HOH . 
F 6 HOH A 14 414 1 HOH HOH . 
F 6 HOH A 15 415 37 HOH HOH . 
F 6 HOH A 16 416 33 HOH HOH . 
F 6 HOH A 17 417 58 HOH HOH . 
F 6 HOH A 18 418 11 HOH HOH . 
F 6 HOH A 19 419 46 HOH HOH . 
F 6 HOH A 20 420 21 HOH HOH . 
F 6 HOH A 21 421 59 HOH HOH . 
F 6 HOH A 22 422 31 HOH HOH . 
F 6 HOH A 23 423 9 HOH HOH . 
F 6 HOH A 24 424 45 HOH HOH . 
F 6 HOH A 25 425 52 HOH HOH . 
F 6 HOH A 26 426 19 HOH HOH . 
F 6 HOH A 27 427 3 HOH HOH . 
F 6 HOH A 28 428 16 HOH HOH . 
F 6 HOH A 29 429 32 HOH HOH . 
F 6 HOH A 30 430 7 HOH HOH . 
F 6 HOH A 31 431 38 HOH HOH . 
F 6 HOH A 32 432 53 HOH HOH . 
F 6 HOH A 33 433 36 HOH HOH . 
F 6 HOH A 34 434 28 HOH HOH . 
F 6 HOH A 35 435 40 HOH HOH . 
F 6 HOH A 36 436 17 HOH HOH . 
F 6 HOH A 37 437 8 HOH HOH . 
F 6 HOH A 38 438 34 HOH HOH . 
F 6 HOH A 39 439 48 HOH HOH . 
F 6 HOH A 40 440 18 HOH HOH . 
F 6 HOH A 41 441 5 HOH HOH . 
F 6 HOH A 42 442 47 HOH HOH . 
F 6 HOH A 43 443 63 HOH HOH . 
F 6 HOH A 44 444 15 HOH HOH . 
F 6 HOH A 45 445 23 HOH HOH . 
F 6 HOH A 46 446 14 HOH HOH . 
F 6 HOH A 47 447 50 HOH HOH . 
F 6 HOH A 48 448 35 HOH HOH . 
F 6 HOH A 49 449 56 HOH HOH . 
F 6 HOH A 50 450 10 HOH HOH . 
F 6 HOH A 51 451 41 HOH HOH . 
F 6 HOH A 52 452 57 HOH HOH . 
F 6 HOH A 53 453 4 HOH HOH . 
F 6 HOH A 54 454 30 HOH HOH . 
F 6 HOH A 55 455 54 HOH HOH . 
F 6 HOH A 56 456 64 HOH HOH . 
F 6 HOH A 57 457 62 HOH HOH . 
F 6 HOH A 58 458 26 HOH HOH . 
F 6 HOH A 59 459 29 HOH HOH . 
F 6 HOH A 60 460 6 HOH HOH . 
F 6 HOH A 61 461 39 HOH HOH . 
F 6 HOH A 62 462 20 HOH HOH . 
F 6 HOH A 63 463 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 -15.438 8.922 -6.238 1 39.56 ? C1 NAG 303 A 1 
HETATM 2 C C2 NAG . . . D 4 -15.297 9.594 -7.616 1 43.6 ? C2 NAG 303 A 1 
HETATM 3 C C3 NAG . . . D 4 -15.854 11.032 -7.291 1 42.56 ? C3 NAG 303 A 1 
HETATM 4 C C4 NAG . . . D 4 -17.376 10.771 -7.15 1 42 ? C4 NAG 303 A 1 
HETATM 5 C C5 NAG . . . D 4 -17.63 9.767 -5.994 1 41.13 ? C5 NAG 303 A 1 
HETATM 6 C C6 NAG . . . D 4 -19.083 9.302 -5.92 1 39.81 ? C6 NAG 303 A 1 
HETATM 7 C C7 NAG . . . D 4 -13.005 9.989 -8.597 1 43.82 ? C7 NAG 303 A 1 
HETATM 8 C C8 NAG . . . D 4 -11.936 9.42 -9.461 1 42.76 ? C8 NAG 303 A 1 
HETATM 9 N N2 NAG . . . D 4 -14.064 9.217 -8.364 1 44.13 ? N2 NAG 303 A 1 
HETATM 10 O O3 NAG . . . D 4 -15.637 12.102 -8.222 1 39.64 ? O3 NAG 303 A 1 
HETATM 11 O O4 NAG . . . D 4 -18.148 11.966 -6.985 1 37.79 ? O4 NAG 303 A 1 
HETATM 12 O O5 NAG . . . D 4 -16.812 8.594 -6.113 1 37.61 ? O5 NAG 303 A 1 
HETATM 13 O O6 NAG . . . D 4 -19.235 8.3 -4.901 1 35.1 ? O6 NAG 303 A 1 
HETATM 14 O O7 NAG . . . D 4 -12.906 11.109 -8.147 1 49.67 ? O7 NAG 303 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#