data_7PZC
#
_model_server_result.job_id            IOXMYxMb9BDgIJMZYeWRYA 
_model_server_result.datetime_utc      '2024-11-29 09:19:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7pzc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1101}' 
#
_entry.id    7PZC 
#
_exptl.entry_id    7PZC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7PZC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7PZC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
? 2 Y N N 
? 2 AA N N 
? 2 CA N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 56 n n 
PB O2B ADP sing 57 n n 
PB O3B ADP sing 58 n n 
PB O3A ADP sing 59 n n 
O2B HOB2 ADP sing 60 n n 
O3B HOB3 ADP sing 61 n n 
PA O1A ADP doub 62 n n 
PA O2A ADP sing 63 n n 
PA O3A ADP sing 64 n n 
PA O5' ADP sing 65 n n 
O2A HOA2 ADP sing 66 n n 
O5' C5' ADP sing 67 n n 
C5' C4' ADP sing 68 n n 
C5' "H5'1" ADP sing 69 n n 
C5' "H5'2" ADP sing 70 n n 
C4' O4' ADP sing 71 n n 
C4' C3' ADP sing 72 n n 
C4' H4' ADP sing 73 n n 
O4' C1' ADP sing 74 n n 
C3' O3' ADP sing 75 n n 
C3' C2' ADP sing 76 n n 
C3' H3' ADP sing 77 n n 
O3' HO3' ADP sing 78 n n 
C2' O2' ADP sing 79 n n 
C2' C1' ADP sing 80 n n 
C2' H2' ADP sing 81 n n 
O2' HO2' ADP sing 82 n n 
C1' N9 ADP sing 83 n n 
C1' H1' ADP sing 84 n n 
N9 C8 ADP sing 85 n y 
N9 C4 ADP sing 86 n y 
C8 N7 ADP doub 87 n y 
C8 H8 ADP sing 88 n n 
N7 C5 ADP sing 89 n y 
C5 C6 ADP sing 90 n y 
C5 C4 ADP doub 91 n y 
C6 N6 ADP sing 92 n n 
C6 N1 ADP doub 93 n y 
N6 HN61 ADP sing 94 n n 
N6 HN62 ADP sing 95 n n 
N1 C2 ADP sing 96 n y 
C2 N3 ADP doub 97 n y 
C2 H2 ADP sing 98 n n 
N3 C4 ADP sing 99 n y 
#
_atom_sites.entry_id                     7PZC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 ADP A 1 1101 1101 ADP ADP . 
L 3 8GI A 1 1102 1102 8GI LIG . 
M 2 ADP B 1 1101 1101 ADP ADP . 
N 3 8GI B 1 1102 1102 8GI LIG . 
O 2 ADP C 1 1101 1101 ADP ADP . 
P 3 8GI C 1 1102 1102 8GI LIG . 
Q 2 ADP D 1 1101 1101 ADP ADP . 
R 3 8GI D 1 1102 1102 8GI LIG . 
S 2 ADP E 1 1101 1101 ADP ADP . 
T 3 8GI E 1 1102 1102 8GI LIG . 
U 2 ADP F 1 1101 1101 ADP ADP . 
V 3 8GI F 1 1102 1102 8GI LIG . 
W 2 ADP G 1 1101 1101 ADP ADP . 
X 3 8GI G 1 1102 1102 8GI LIG . 
Y 2 ADP H 1 1101 1101 ADP ADP . 
Z 3 8GI H 1 1102 1102 8GI LIG . 
AA 2 ADP I 1 1101 1101 ADP ADP . 
BA 3 8GI I 1 1102 1102 8GI LIG . 
CA 2 ADP J 1 1101 1101 ADP ADP . 
DA 3 8GI J 1 1102 1102 8GI LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . M 2 155.075 209.198 197.651 1 197.34 0 PB ADP 1101 B 1 
HETATM 2 O O1B ADP . . . M 2 154.748 209.699 196.266 1 197.34 0 O1B ADP 1101 B 1 
HETATM 3 O O2B ADP . . . M 2 155.621 210.253 198.581 1 197.34 -1 O2B ADP 1101 B 1 
HETATM 4 O O3B ADP . . . M 2 155.804 207.877 197.691 1 197.34 0 O3B ADP 1101 B 1 
HETATM 5 P PA ADP . . . M 2 153.562 207.893 199.567 1 197.34 0 PA ADP 1101 B 1 
HETATM 6 O O1A ADP . . . M 2 153.496 206.465 199.09 1 197.34 -1 O1A ADP 1101 B 1 
HETATM 7 O O2A ADP . . . M 2 154.64 208.312 200.536 1 197.34 0 O2A ADP 1101 B 1 
HETATM 8 O O3A ADP . . . M 2 153.641 208.845 198.276 1 197.34 0 O3A ADP 1101 B 1 
HETATM 9 O O5' ADP . . . M 2 152.133 208.303 200.177 1 197.34 0 O5' ADP 1101 B 1 
HETATM 10 C C5' ADP . . . M 2 151.696 207.788 201.43 1 197.34 0 C5' ADP 1101 B 1 
HETATM 11 C C4' ADP . . . M 2 150.301 208.325 201.718 1 197.34 0 C4' ADP 1101 B 1 
HETATM 12 O O4' ADP . . . M 2 149.544 208.36 200.508 1 197.34 0 O4' ADP 1101 B 1 
HETATM 13 C C3' ADP . . . M 2 149.561 207.442 202.705 1 197.34 0 C3' ADP 1101 B 1 
HETATM 14 O O3' ADP . . . M 2 149.206 208.205 203.862 1 197.34 0 O3' ADP 1101 B 1 
HETATM 15 C C2' ADP . . . M 2 148.311 206.978 201.991 1 197.34 0 C2' ADP 1101 B 1 
HETATM 16 O O2' ADP . . . M 2 147.154 207.319 202.76 1 197.34 0 O2' ADP 1101 B 1 
HETATM 17 C C1' ADP . . . M 2 148.28 207.719 200.667 1 197.34 0 C1' ADP 1101 B 1 
HETATM 18 N N9 ADP . . . M 2 148.097 206.76 199.555 1 197.34 0 N9 ADP 1101 B 1 
HETATM 19 C C8 ADP . . . M 2 148.977 206.543 198.563 1 197.34 0 C8 ADP 1101 B 1 
HETATM 20 N N7 ADP . . . M 2 148.517 205.61 197.695 1 197.34 0 N7 ADP 1101 B 1 
HETATM 21 C C5 ADP . . . M 2 147.31 205.213 198.134 1 197.34 0 C5 ADP 1101 B 1 
HETATM 22 C C6 ADP . . . M 2 146.273 204.251 197.688 1 197.34 0 C6 ADP 1101 B 1 
HETATM 23 N N6 ADP . . . M 2 146.438 203.505 196.571 1 197.34 0 N6 ADP 1101 B 1 
HETATM 24 N N1 ADP . . . M 2 145.156 204.142 198.435 1 197.34 0 N1 ADP 1101 B 1 
HETATM 25 C C2 ADP . . . M 2 144.978 204.877 199.548 1 197.34 0 C2 ADP 1101 B 1 
HETATM 26 N N3 ADP . . . M 2 145.872 205.766 200.011 1 197.34 0 N3 ADP 1101 B 1 
HETATM 27 C C4 ADP . . . M 2 147.037 205.978 199.357 1 197.34 0 C4 ADP 1101 B 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    91 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#