data_7Q07 # _model_server_result.job_id OD_dprMxh6Oc6YbSyZJ1Jg _model_server_result.datetime_utc '2024-10-10 10:19:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 7Q07 # _exptl.entry_id 7Q07 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q07 _cell.length_a 130.827 _cell.length_b 130.827 _cell.length_c 130.827 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 0 0 3 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 0 0 0 4 'point symmetry operation' ? ? 0 0 -1 -1 0 0 0 1 0 0 0 0 5 'point symmetry operation' ? ? 0 0 1 -1 0 0 0 -1 0 0 0 0 6 'point symmetry operation' ? ? 0 0 -1 1 0 0 0 -1 0 0 0 0 7 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 0 0 0 8 'point symmetry operation' ? ? 0 1 0 0 0 -1 -1 0 0 0 0 0 9 'point symmetry operation' ? ? 0 -1 0 0 0 1 -1 0 0 0 0 0 10 'point symmetry operation' ? ? 0 -1 0 0 0 -1 1 0 0 0 0 0 11 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 0 0 0 12 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 246 n n PA O2A NAP sing 247 n n PA O5B NAP sing 248 n n PA O3 NAP sing 249 n n O2A HOA2 NAP sing 250 n n O5B C5B NAP sing 251 n n C5B C4B NAP sing 252 n n C5B H51A NAP sing 253 n n C5B H52A NAP sing 254 n n C4B O4B NAP sing 255 n n C4B C3B NAP sing 256 n n C4B H4B NAP sing 257 n n O4B C1B NAP sing 258 n n C3B O3B NAP sing 259 n n C3B C2B NAP sing 260 n n C3B H3B NAP sing 261 n n O3B HO3A NAP sing 262 n n C2B O2B NAP sing 263 n n C2B C1B NAP sing 264 n n C2B H2B NAP sing 265 n n O2B P2B NAP sing 266 n n C1B N9A NAP sing 267 n n C1B H1B NAP sing 268 n n N9A C8A NAP sing 269 n y N9A C4A NAP sing 270 n y C8A N7A NAP doub 271 n y C8A H8A NAP sing 272 n n N7A C5A NAP sing 273 n y C5A C6A NAP sing 274 n y C5A C4A NAP doub 275 n y C6A N6A NAP sing 276 n n C6A N1A NAP doub 277 n y N6A H61A NAP sing 278 n n N6A H62A NAP sing 279 n n N1A C2A NAP sing 280 n y C2A N3A NAP doub 281 n y C2A H2A NAP sing 282 n n N3A C4A NAP sing 283 n y O3 PN NAP sing 284 n n PN O1N NAP doub 285 n n PN O2N NAP sing 286 n n PN O5D NAP sing 287 n n O5D C5D NAP sing 288 n n C5D C4D NAP sing 289 n n C5D H51N NAP sing 290 n n C5D H52N NAP sing 291 n n C4D O4D NAP sing 292 n n C4D C3D NAP sing 293 n n C4D H4D NAP sing 294 n n O4D C1D NAP sing 295 n n C3D O3D NAP sing 296 n n C3D C2D NAP sing 297 n n C3D H3D NAP sing 298 n n O3D HO3N NAP sing 299 n n C2D O2D NAP sing 300 n n C2D C1D NAP sing 301 n n C2D H2D NAP sing 302 n n O2D HO2N NAP sing 303 n n C1D N1N NAP sing 304 n n C1D H1D NAP sing 305 n n N1N C2N NAP sing 306 n y N1N C6N NAP doub 307 n y C2N C3N NAP doub 308 n y C2N H2N NAP sing 309 n n C3N C7N NAP sing 310 n n C3N C4N NAP sing 311 n y C7N O7N NAP doub 312 n n C7N N7N NAP sing 313 n n N7N H71N NAP sing 314 n n N7N H72N NAP sing 315 n n C4N C5N NAP doub 316 n y C4N H4N NAP sing 317 n n C5N C6N NAP sing 318 n y C5N H5N NAP sing 319 n n C6N H6N NAP sing 320 n n P2B O1X NAP doub 321 n n P2B O2X NAP sing 322 n n P2B O3X NAP sing 323 n n O2X HOP2 NAP sing 324 n n O3X HOP3 NAP sing 325 n n # _atom_sites.entry_id 7Q07 _atom_sites.fract_transf_matrix[1][1] 0.007644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TLA A 1 601 601 TLA TLA . C 3 CL A 1 602 701 CL CL . D 4 EDO A 1 603 801 EDO EDO . E 5 NAP A 1 604 401 NAP NDP . F 3 CL A 1 605 1 CL CL . G 3 CL A 1 606 2 CL CL . H 6 HOH A 1 701 17 HOH HOH . H 6 HOH A 2 702 7 HOH HOH . H 6 HOH A 3 703 42 HOH HOH . H 6 HOH A 4 704 64 HOH HOH . H 6 HOH A 5 705 4 HOH HOH . H 6 HOH A 6 706 170 HOH HOH . H 6 HOH A 7 707 37 HOH HOH . H 6 HOH A 8 708 90 HOH HOH . H 6 HOH A 9 709 100 HOH HOH . H 6 HOH A 10 710 30 HOH HOH . H 6 HOH A 11 711 12 HOH HOH . H 6 HOH A 12 712 50 HOH HOH . H 6 HOH A 13 713 80 HOH HOH . H 6 HOH A 14 714 67 HOH HOH . H 6 HOH A 15 715 109 HOH HOH . H 6 HOH A 16 716 23 HOH HOH . H 6 HOH A 17 717 69 HOH HOH . H 6 HOH A 18 718 27 HOH HOH . H 6 HOH A 19 719 72 HOH HOH . H 6 HOH A 20 720 47 HOH HOH . H 6 HOH A 21 721 39 HOH HOH . H 6 HOH A 22 722 36 HOH HOH . H 6 HOH A 23 723 154 HOH HOH . H 6 HOH A 24 724 8 HOH HOH . H 6 HOH A 25 725 34 HOH HOH . H 6 HOH A 26 726 106 HOH HOH . H 6 HOH A 27 727 97 HOH HOH . H 6 HOH A 28 728 20 HOH HOH . H 6 HOH A 29 729 22 HOH HOH . H 6 HOH A 30 730 92 HOH HOH . H 6 HOH A 31 731 3 HOH HOH . H 6 HOH A 32 732 65 HOH HOH . H 6 HOH A 33 733 82 HOH HOH . H 6 HOH A 34 734 129 HOH HOH . H 6 HOH A 35 735 52 HOH HOH . H 6 HOH A 36 736 6 HOH HOH . H 6 HOH A 37 737 102 HOH HOH . H 6 HOH A 38 738 1 HOH HOH . H 6 HOH A 39 739 60 HOH HOH . H 6 HOH A 40 740 148 HOH HOH . H 6 HOH A 41 741 96 HOH HOH . H 6 HOH A 42 742 18 HOH HOH . H 6 HOH A 43 743 44 HOH HOH . H 6 HOH A 44 744 157 HOH HOH . H 6 HOH A 45 745 25 HOH HOH . H 6 HOH A 46 746 176 HOH HOH . H 6 HOH A 47 747 49 HOH HOH . H 6 HOH A 48 748 24 HOH HOH . H 6 HOH A 49 749 149 HOH HOH . H 6 HOH A 50 750 94 HOH HOH . H 6 HOH A 51 751 98 HOH HOH . H 6 HOH A 52 752 10 HOH HOH . H 6 HOH A 53 753 89 HOH HOH . H 6 HOH A 54 754 11 HOH HOH . H 6 HOH A 55 755 32 HOH HOH . H 6 HOH A 56 756 137 HOH HOH . H 6 HOH A 57 757 53 HOH HOH . H 6 HOH A 58 758 35 HOH HOH . H 6 HOH A 59 759 161 HOH HOH . H 6 HOH A 60 760 173 HOH HOH . H 6 HOH A 61 761 15 HOH HOH . H 6 HOH A 62 762 78 HOH HOH . H 6 HOH A 63 763 21 HOH HOH . H 6 HOH A 64 764 2 HOH HOH . H 6 HOH A 65 765 162 HOH HOH . H 6 HOH A 66 766 28 HOH HOH . H 6 HOH A 67 767 26 HOH HOH . H 6 HOH A 68 768 63 HOH HOH . H 6 HOH A 69 769 70 HOH HOH . H 6 HOH A 70 770 152 HOH HOH . H 6 HOH A 71 771 71 HOH HOH . H 6 HOH A 72 772 29 HOH HOH . H 6 HOH A 73 773 120 HOH HOH . H 6 HOH A 74 774 93 HOH HOH . H 6 HOH A 75 775 175 HOH HOH . H 6 HOH A 76 776 14 HOH HOH . H 6 HOH A 77 777 122 HOH HOH . H 6 HOH A 78 778 119 HOH HOH . H 6 HOH A 79 779 73 HOH HOH . H 6 HOH A 80 780 40 HOH HOH . H 6 HOH A 81 781 13 HOH HOH . H 6 HOH A 82 782 76 HOH HOH . H 6 HOH A 83 783 104 HOH HOH . H 6 HOH A 84 784 125 HOH HOH . H 6 HOH A 85 785 79 HOH HOH . H 6 HOH A 86 786 5 HOH HOH . H 6 HOH A 87 787 46 HOH HOH . H 6 HOH A 88 788 174 HOH HOH . H 6 HOH A 89 789 159 HOH HOH . H 6 HOH A 90 790 103 HOH HOH . H 6 HOH A 91 791 168 HOH HOH . H 6 HOH A 92 792 16 HOH HOH . H 6 HOH A 93 793 91 HOH HOH . H 6 HOH A 94 794 95 HOH HOH . H 6 HOH A 95 795 172 HOH HOH . H 6 HOH A 96 796 111 HOH HOH . H 6 HOH A 97 797 59 HOH HOH . H 6 HOH A 98 798 165 HOH HOH . H 6 HOH A 99 799 43 HOH HOH . H 6 HOH A 100 800 55 HOH HOH . H 6 HOH A 101 801 150 HOH HOH . H 6 HOH A 102 802 146 HOH HOH . H 6 HOH A 103 803 118 HOH HOH . H 6 HOH A 104 804 61 HOH HOH . H 6 HOH A 105 805 116 HOH HOH . H 6 HOH A 106 806 155 HOH HOH . H 6 HOH A 107 807 166 HOH HOH . H 6 HOH A 108 808 133 HOH HOH . H 6 HOH A 109 809 114 HOH HOH . H 6 HOH A 110 810 163 HOH HOH . H 6 HOH A 111 811 158 HOH HOH . H 6 HOH A 112 812 88 HOH HOH . H 6 HOH A 113 813 75 HOH HOH . H 6 HOH A 114 814 138 HOH HOH . H 6 HOH A 115 815 123 HOH HOH . H 6 HOH A 116 816 86 HOH HOH . H 6 HOH A 117 817 31 HOH HOH . H 6 HOH A 118 818 167 HOH HOH . H 6 HOH A 119 819 99 HOH HOH . H 6 HOH A 120 820 62 HOH HOH . H 6 HOH A 121 821 140 HOH HOH . H 6 HOH A 122 822 144 HOH HOH . H 6 HOH A 123 823 81 HOH HOH . H 6 HOH A 124 824 121 HOH HOH . H 6 HOH A 125 825 105 HOH HOH . H 6 HOH A 126 826 169 HOH HOH . H 6 HOH A 127 827 160 HOH HOH . H 6 HOH A 128 828 57 HOH HOH . H 6 HOH A 129 829 87 HOH HOH . H 6 HOH A 130 830 128 HOH HOH . H 6 HOH A 131 831 136 HOH HOH . H 6 HOH A 132 832 110 HOH HOH . H 6 HOH A 133 833 58 HOH HOH . H 6 HOH A 134 834 171 HOH HOH . H 6 HOH A 135 835 85 HOH HOH . H 6 HOH A 136 836 56 HOH HOH . H 6 HOH A 137 837 135 HOH HOH . H 6 HOH A 138 838 113 HOH HOH . H 6 HOH A 139 839 164 HOH HOH . H 6 HOH A 140 840 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 5 44.398 16.38 18.117 0.6 43.28 ? PA NAP 604 A 1 HETATM 2 O O1A NAP . . . E 5 43.522 16.226 19.299 0.6 29.23 -1 O1A NAP 604 A 1 HETATM 3 O O2A NAP . . . E 5 45.73 15.666 18.359 0.6 35.05 ? O2A NAP 604 A 1 HETATM 4 O O5B NAP . . . E 5 44.704 17.916 17.755 0.6 37.48 ? O5B NAP 604 A 1 HETATM 5 C C5B NAP . . . E 5 45.715 18.239 16.782 1 36.36 ? C5B NAP 604 A 1 HETATM 6 C C4B NAP . . . E 5 46.445 19.46 17.278 1 38.66 ? C4B NAP 604 A 1 HETATM 7 O O4B NAP . . . E 5 45.489 20.435 17.752 1 37.61 ? O4B NAP 604 A 1 HETATM 8 C C3B NAP . . . E 5 47.411 19.207 18.434 1 35.9 ? C3B NAP 604 A 1 HETATM 9 O O3B NAP . . . E 5 48.641 19.886 18.22 1 36.64 ? O3B NAP 604 A 1 HETATM 10 C C2B NAP . . . E 5 46.658 19.737 19.651 1 42.13 ? C2B NAP 604 A 1 HETATM 11 O O2B NAP . . . E 5 47.528 20.25 20.681 1 47.14 ? O2B NAP 604 A 1 HETATM 12 C C1B NAP . . . E 5 45.849 20.872 19.047 1 38.76 ? C1B NAP 604 A 1 HETATM 13 N N9A NAP . . . E 5 44.637 21.191 19.789 1 36.37 ? N9A NAP 604 A 1 HETATM 14 C C8A NAP . . . E 5 43.543 20.389 19.966 1 35.18 ? C8A NAP 604 A 1 HETATM 15 N N7A NAP . . . E 5 42.596 20.93 20.692 1 37 ? N7A NAP 604 A 1 HETATM 16 C C5A NAP . . . E 5 43.102 22.179 21.014 1 32.52 ? C5A NAP 604 A 1 HETATM 17 C C6A NAP . . . E 5 42.577 23.249 21.76 1 36.26 ? C6A NAP 604 A 1 HETATM 18 N N6A NAP . . . E 5 41.376 23.232 22.337 1 27.11 ? N6A NAP 604 A 1 HETATM 19 N N1A NAP . . . E 5 43.335 24.359 21.879 1 42.15 ? N1A NAP 604 A 1 HETATM 20 C C2A NAP . . . E 5 44.529 24.388 21.283 1 37.97 ? C2A NAP 604 A 1 HETATM 21 N N3A NAP . . . E 5 45.126 23.443 20.557 1 34.27 ? N3A NAP 604 A 1 HETATM 22 C C4A NAP . . . E 5 44.357 22.355 20.462 1 40.6 ? C4A NAP 604 A 1 HETATM 23 O O3 NAP . . . E 5 43.717 15.743 16.826 0.6 30.77 ? O3 NAP 604 A 1 HETATM 24 P PN NAP . . . E 5 44.133 15.573 15.299 0.6 51 ? PN NAP 604 A 1 HETATM 25 O O1N NAP . . . E 5 43.04 14.889 14.575 0.6 49.99 -1 O1N NAP 604 A 1 HETATM 26 O O2N NAP . . . E 5 44.343 16.946 14.657 0.6 33.53 ? O2N NAP 604 A 1 HETATM 27 O O5D NAP . . . E 5 45.501 14.744 15.235 0.6 38.61 ? O5D NAP 604 A 1 HETATM 28 C C5D NAP . . . E 5 46.116 14.238 14.035 0.6 27.99 ? C5D NAP 604 A 1 HETATM 29 P P2B NAP . . . E 5 47.738 19.585 22.104 1 42.01 ? P2B NAP 604 A 1 HETATM 30 O O1X NAP . . . E 5 48.859 18.673 22.079 1 38.19 ? O1X NAP 604 A 1 HETATM 31 O O2X NAP . . . E 5 46.473 18.92 22.432 1 55.4 -1 O2X NAP 604 A 1 HETATM 32 O O3X NAP . . . E 5 47.93 20.697 23.047 1 36.94 ? O3X NAP 604 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 32 #