data_7Q19 # _model_server_result.job_id m5ocq_XG474stUiFAFTduA _model_server_result.datetime_utc '2025-01-10 14:45:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q19 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7Q19 # _exptl.entry_id 7Q19 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.381 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Q19 _cell.length_a 66.298 _cell.length_b 66.298 _cell.length_c 60.63 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q19 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_676 x-y+1,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 114.831504 60.63 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 AAA CYS 66 1_555 A SG CYS 160 AAA CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 A SG CYS 106 AAA CYS 106 1_555 A SG CYS 119 AAA CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'C18 H22 N2' _chem_comp.formula_weight 266.381 _chem_comp.id DSM _chem_comp.mon_nstd_flag . _chem_comp.name 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Desipramine;Norpramin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 N2 DSM sing 83 n n C18 H181 DSM sing 84 n n C18 H182 DSM sing 85 n n C18 H183 DSM sing 86 n n N2 C17 DSM sing 87 n n N2 HN2 DSM sing 88 n n C17 C16 DSM sing 89 n n C17 H171 DSM sing 90 n n C17 H172 DSM sing 91 n n C16 C15 DSM sing 92 n n C16 H161 DSM sing 93 n n C16 H162 DSM sing 94 n n C15 N1 DSM sing 95 n n C15 H151 DSM sing 96 n n C15 H152 DSM sing 97 n n N1 C11 DSM sing 98 n n N1 C14 DSM sing 99 n n C14 C1 DSM sing 100 n y C14 C13 DSM doub 101 n y C1 C2 DSM doub 102 n y C1 H1 DSM sing 103 n n C2 C3 DSM sing 104 n y C2 H2 DSM sing 105 n n C3 C4 DSM doub 106 n y C3 H3 DSM sing 107 n n C4 C13 DSM sing 108 n y C4 H4 DSM sing 109 n n C13 C5 DSM sing 110 n n C5 C6 DSM sing 111 n n C5 H51 DSM sing 112 n n C5 H52 DSM sing 113 n n C6 C12 DSM sing 114 n n C6 H61 DSM sing 115 n n C6 H62 DSM sing 116 n n C12 C11 DSM doub 117 n y C12 C7 DSM sing 118 n y C11 C10 DSM sing 119 n y C7 C8 DSM doub 120 n y C7 H7 DSM sing 121 n n C8 C9 DSM sing 122 n y C8 H8 DSM sing 123 n n C9 C10 DSM doub 124 n y C9 H9 DSM sing 125 n n C10 H10 DSM sing 126 n n # _atom_sites.entry_id 7Q19 _atom_sites.fract_transf_matrix[1][1] 0.015083 _atom_sites.fract_transf_matrix[1][2] 0.008708 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DSM AAA 1 201 201 DSM DSM . C 3 EDO AAA 1 202 301 EDO EDO . D 4 SO4 AAA 1 203 1 SO4 SO4 . E 4 SO4 AAA 1 204 2 SO4 SO4 . F 5 CL AAA 1 205 1 CL CL . G 5 CL AAA 1 206 2 CL CL . H 5 CL AAA 1 207 3 CL CL . I 6 HOH AAA 1 301 79 HOH HOH . I 6 HOH AAA 2 302 113 HOH HOH . I 6 HOH AAA 3 303 86 HOH HOH . I 6 HOH AAA 4 304 14 HOH HOH . I 6 HOH AAA 5 305 78 HOH HOH . I 6 HOH AAA 6 306 109 HOH HOH . I 6 HOH AAA 7 307 35 HOH HOH . I 6 HOH AAA 8 308 25 HOH HOH . I 6 HOH AAA 9 309 149 HOH HOH . I 6 HOH AAA 10 310 141 HOH HOH . I 6 HOH AAA 11 311 90 HOH HOH . I 6 HOH AAA 12 312 48 HOH HOH . I 6 HOH AAA 13 313 87 HOH HOH . I 6 HOH AAA 14 314 49 HOH HOH . I 6 HOH AAA 15 315 80 HOH HOH . I 6 HOH AAA 16 316 106 HOH HOH . I 6 HOH AAA 17 317 138 HOH HOH . I 6 HOH AAA 18 318 43 HOH HOH . I 6 HOH AAA 19 319 145 HOH HOH . I 6 HOH AAA 20 320 53 HOH HOH . I 6 HOH AAA 21 321 94 HOH HOH . I 6 HOH AAA 22 322 118 HOH HOH . I 6 HOH AAA 23 323 61 HOH HOH . I 6 HOH AAA 24 324 56 HOH HOH . I 6 HOH AAA 25 325 37 HOH HOH . I 6 HOH AAA 26 326 12 HOH HOH . I 6 HOH AAA 27 327 6 HOH HOH . I 6 HOH AAA 28 328 5 HOH HOH . I 6 HOH AAA 29 329 76 HOH HOH . I 6 HOH AAA 30 330 52 HOH HOH . I 6 HOH AAA 31 331 39 HOH HOH . I 6 HOH AAA 32 332 124 HOH HOH . I 6 HOH AAA 33 333 115 HOH HOH . I 6 HOH AAA 34 334 63 HOH HOH . I 6 HOH AAA 35 335 158 HOH HOH . I 6 HOH AAA 36 336 33 HOH HOH . I 6 HOH AAA 37 337 13 HOH HOH . I 6 HOH AAA 38 338 24 HOH HOH . I 6 HOH AAA 39 339 65 HOH HOH . I 6 HOH AAA 40 340 119 HOH HOH . I 6 HOH AAA 41 341 74 HOH HOH . I 6 HOH AAA 42 342 127 HOH HOH . I 6 HOH AAA 43 343 130 HOH HOH . I 6 HOH AAA 44 344 34 HOH HOH . I 6 HOH AAA 45 345 72 HOH HOH . I 6 HOH AAA 46 346 153 HOH HOH . I 6 HOH AAA 47 347 1 HOH HOH . I 6 HOH AAA 48 348 28 HOH HOH . I 6 HOH AAA 49 349 30 HOH HOH . I 6 HOH AAA 50 350 108 HOH HOH . I 6 HOH AAA 51 351 71 HOH HOH . I 6 HOH AAA 52 352 107 HOH HOH . I 6 HOH AAA 53 353 19 HOH HOH . I 6 HOH AAA 54 354 67 HOH HOH . I 6 HOH AAA 55 355 47 HOH HOH . I 6 HOH AAA 56 356 104 HOH HOH . I 6 HOH AAA 57 357 139 HOH HOH . I 6 HOH AAA 58 358 59 HOH HOH . I 6 HOH AAA 59 359 55 HOH HOH . I 6 HOH AAA 60 360 73 HOH HOH . I 6 HOH AAA 61 361 50 HOH HOH . I 6 HOH AAA 62 362 120 HOH HOH . I 6 HOH AAA 63 363 22 HOH HOH . I 6 HOH AAA 64 364 44 HOH HOH . I 6 HOH AAA 65 365 16 HOH HOH . I 6 HOH AAA 66 366 29 HOH HOH . I 6 HOH AAA 67 367 64 HOH HOH . I 6 HOH AAA 68 368 7 HOH HOH . I 6 HOH AAA 69 369 136 HOH HOH . I 6 HOH AAA 70 370 58 HOH HOH . I 6 HOH AAA 71 371 114 HOH HOH . I 6 HOH AAA 72 372 3 HOH HOH . I 6 HOH AAA 73 373 15 HOH HOH . I 6 HOH AAA 74 374 62 HOH HOH . I 6 HOH AAA 75 375 66 HOH HOH . I 6 HOH AAA 76 376 103 HOH HOH . I 6 HOH AAA 77 377 121 HOH HOH . I 6 HOH AAA 78 378 133 HOH HOH . I 6 HOH AAA 79 379 100 HOH HOH . I 6 HOH AAA 80 380 68 HOH HOH . I 6 HOH AAA 81 381 46 HOH HOH . I 6 HOH AAA 82 382 154 HOH HOH . I 6 HOH AAA 83 383 135 HOH HOH . I 6 HOH AAA 84 384 10 HOH HOH . I 6 HOH AAA 85 385 60 HOH HOH . I 6 HOH AAA 86 386 134 HOH HOH . I 6 HOH AAA 87 387 110 HOH HOH . I 6 HOH AAA 88 388 97 HOH HOH . I 6 HOH AAA 89 389 36 HOH HOH . I 6 HOH AAA 90 390 163 HOH HOH . I 6 HOH AAA 91 391 31 HOH HOH . I 6 HOH AAA 92 392 132 HOH HOH . I 6 HOH AAA 93 393 42 HOH HOH . I 6 HOH AAA 94 394 32 HOH HOH . I 6 HOH AAA 95 395 117 HOH HOH . I 6 HOH AAA 96 396 85 HOH HOH . I 6 HOH AAA 97 397 96 HOH HOH . I 6 HOH AAA 98 398 92 HOH HOH . I 6 HOH AAA 99 399 143 HOH HOH . I 6 HOH AAA 100 400 75 HOH HOH . I 6 HOH AAA 101 401 40 HOH HOH . I 6 HOH AAA 102 402 116 HOH HOH . I 6 HOH AAA 103 403 84 HOH HOH . I 6 HOH AAA 104 404 155 HOH HOH . I 6 HOH AAA 105 405 77 HOH HOH . I 6 HOH AAA 106 406 54 HOH HOH . I 6 HOH AAA 107 407 122 HOH HOH . I 6 HOH AAA 108 408 111 HOH HOH . I 6 HOH AAA 109 409 23 HOH HOH . I 6 HOH AAA 110 410 123 HOH HOH . I 6 HOH AAA 111 411 131 HOH HOH . I 6 HOH AAA 112 412 137 HOH HOH . I 6 HOH AAA 113 413 128 HOH HOH . I 6 HOH AAA 114 414 148 HOH HOH . I 6 HOH AAA 115 415 95 HOH HOH . I 6 HOH AAA 116 416 26 HOH HOH . I 6 HOH AAA 117 417 164 HOH HOH . I 6 HOH AAA 118 418 159 HOH HOH . I 6 HOH AAA 119 419 147 HOH HOH . I 6 HOH AAA 120 420 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 DSM . . . B 2 -3.145 45.11 21.781 1 22.31 0 C18 DSM 201 AAA 1 HETATM 2 N N2 DSM . . . B 2 -3.519 45.424 20.4 1 21.53 0 N2 DSM 201 AAA 1 HETATM 3 C C17 DSM . . . B 2 -4.415 46.571 20.252 1 20.75 0 C17 DSM 201 AAA 1 HETATM 4 C C16 DSM . . . B 2 -4.877 46.81 18.813 1 20.78 0 C16 DSM 201 AAA 1 HETATM 5 C C15 DSM . . . B 2 -5.721 48.054 18.757 1 21.02 0 C15 DSM 201 AAA 1 HETATM 6 N N1 DSM . . . B 2 -6.059 48.461 17.404 1 21.3 0 N1 DSM 201 AAA 1 HETATM 7 C C14 DSM . . . B 2 -7.255 49.229 17.227 1 20.61 0 C14 DSM 201 AAA 1 HETATM 8 C C1 DSM . . . B 2 -7.81 49.913 18.302 1 20.3 0 C1 DSM 201 AAA 1 HETATM 9 C C2 DSM . . . B 2 -8.961 50.666 18.137 1 20.28 0 C2 DSM 201 AAA 1 HETATM 10 C C3 DSM . . . B 2 -9.569 50.736 16.911 1 20.63 0 C3 DSM 201 AAA 1 HETATM 11 C C4 DSM . . . B 2 -9.035 50.051 15.839 1 19.87 0 C4 DSM 201 AAA 1 HETATM 12 C C13 DSM . . . B 2 -7.888 49.275 15.974 1 20.4 0 C13 DSM 201 AAA 1 HETATM 13 C C5 DSM . . . B 2 -7.472 48.57 14.69 1 21.42 0 C5 DSM 201 AAA 1 HETATM 14 C C6 DSM . . . B 2 -6.305 47.644 14.763 1 21.67 0 C6 DSM 201 AAA 1 HETATM 15 C C12 DSM . . . B 2 -5.068 48.356 15.222 1 21.83 0 C12 DSM 201 AAA 1 HETATM 16 C C11 DSM . . . B 2 -4.967 48.771 16.546 1 21.37 0 C11 DSM 201 AAA 1 HETATM 17 C C7 DSM . . . B 2 -4.006 48.587 14.357 1 22.28 0 C7 DSM 201 AAA 1 HETATM 18 C C8 DSM . . . B 2 -2.864 49.213 14.822 1 23.49 0 C8 DSM 201 AAA 1 HETATM 19 C C9 DSM . . . B 2 -2.764 49.597 16.151 1 23.09 0 C9 DSM 201 AAA 1 HETATM 20 C C10 DSM . . . B 2 -3.816 49.381 17.022 1 21.12 0 C10 DSM 201 AAA 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #