data_7Q1E # _model_server_result.job_id Ft26mI2ldxZIoS5ojkIuJg _model_server_result.datetime_utc '2024-12-23 05:08:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":501}' # _entry.id 7Q1E # _exptl.entry_id 7Q1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q1E _cell.length_a 53.59 _cell.length_b 68.05 _cell.length_c 420.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O2G GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc2 F O1B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc3 G MG MG . A MG 502 1_555 K O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 G MG MG . A MG 502 1_555 K O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc5 G MG MG . A MG 502 1_555 K O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc6 G MG MG . A MG 502 1_555 K O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc7 H O1B GTP . B GTP 501 1_555 I MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc8 I MG MG . B MG 502 1_555 L O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc9 I MG MG . B MG 502 1_555 L O HOH . B HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7Q1E _atom_sites.fract_transf_matrix[1][1] 0.01866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014695 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 GTP A 1 501 501 GTP GTP . G 6 MG A 1 502 502 MG MG . H 5 GTP B 1 501 501 GTP GTP . I 6 MG B 1 502 502 MG MG . J 7 GOL C 1 501 501 GOL GOL . K 8 HOH A 1 601 9 HOH HOH . K 8 HOH A 2 602 504 HOH HOH . K 8 HOH A 3 603 14 HOH HOH . K 8 HOH A 4 604 13 HOH HOH . K 8 HOH A 5 605 506 HOH HOH . K 8 HOH A 6 606 11 HOH HOH . K 8 HOH A 7 607 12 HOH HOH . K 8 HOH A 8 608 16 HOH HOH . K 8 HOH A 9 609 2 HOH HOH . K 8 HOH A 10 610 503 HOH HOH . K 8 HOH A 11 611 505 HOH HOH . K 8 HOH A 12 612 20 HOH HOH . K 8 HOH A 13 613 4 HOH HOH . K 8 HOH A 14 614 1 HOH HOH . K 8 HOH A 15 615 10 HOH HOH . K 8 HOH A 16 616 6 HOH HOH . K 8 HOH A 17 617 18 HOH HOH . L 8 HOH B 1 601 503 HOH HOH . L 8 HOH B 2 602 15 HOH HOH . L 8 HOH B 3 603 17 HOH HOH . L 8 HOH B 4 604 504 HOH HOH . L 8 HOH B 5 605 3 HOH HOH . L 8 HOH B 6 606 8 HOH HOH . L 8 HOH B 7 607 7 HOH HOH . L 8 HOH B 8 608 22 HOH HOH . M 8 HOH C 1 601 19 HOH HOH . M 8 HOH C 2 602 5 HOH HOH . M 8 HOH C 3 603 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 7 71.709 -3.455 433.119 1 100.18 ? C1 GOL 501 C 1 HETATM 2 O O1 GOL . . . J 7 71.579 -4.781 432.617 1 99.68 ? O1 GOL 501 C 1 HETATM 3 C C2 GOL . . . J 7 70.45 -3.011 433.831 1 100.82 ? C2 GOL 501 C 1 HETATM 4 O O2 GOL . . . J 7 70.196 -3.856 434.965 1 101.01 ? O2 GOL 501 C 1 HETATM 5 C C3 GOL . . . J 7 70.58 -1.572 434.285 1 100.9 ? C3 GOL 501 C 1 HETATM 6 O O3 GOL . . . J 7 69.324 -0.899 434.283 1 101.08 ? O3 GOL 501 C 1 HETATM 7 H H11 GOL . . . J 7 71.958 -2.776 432.305 1 111.7 ? H11 GOL 501 C 1 HETATM 8 H H12 GOL . . . J 7 72.555 -3.409 433.805 1 111.81 ? H12 GOL 501 C 1 HETATM 9 H HO1 GOL . . . J 7 72.489 -5.052 432.325 1 112.63 ? HO1 GOL 501 C 1 HETATM 10 H H2 GOL . . . J 7 69.575 -3.208 433.212 1 110.35 ? H2 GOL 501 C 1 HETATM 11 H HO2 GOL . . . J 7 69.528 -3.404 435.545 1 110.37 ? HO2 GOL 501 C 1 HETATM 12 H H31 GOL . . . J 7 71.284 -1.031 433.655 1 111.45 ? H31 GOL 501 C 1 HETATM 13 H H32 GOL . . . J 7 71.008 -1.529 435.285 1 110.95 ? H32 GOL 501 C 1 HETATM 14 H HO3 GOL . . . J 7 69.041 -0.855 433.333 1 110.4 ? HO3 GOL 501 C 1 # _model_server_stats.io_time_ms 131 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #