data_7Q1L # _model_server_result.job_id fgWxTFsIWT3K30XlekW9JQ _model_server_result.datetime_utc '2024-11-06 02:55:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q1l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1104}' # _entry.id 7Q1L # _exptl.entry_id 7Q1L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q1L _cell.length_a 87.631 _cell.length_b 102.148 _cell.length_c 199.969 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q1L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,Q 1 1 B,D,L,M,N,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 L N N ? 3 M N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 D 1 NAG D 1604 NAG 2 n C NAG 2 D 2 NAG D 1605 NAG 2 n D NAG 1 C 1 NAG D 1606 NAG 2 n D NAG 2 C 2 NAG D 1607 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 9 1_555 A SG CYS 45 A CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 16 A CYS 19 1_555 A SG CYS 36 A CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 115 A CYS 118 1_555 A SG CYS 191 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 134 A CYS 137 1_555 A SG CYS 328 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 155 A CYS 158 1_555 A SG CYS 171 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf6 A SG CYS 158 A CYS 161 1_555 A SG CYS 176 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 168 A CYS 171 1_555 A SG CYS 174 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 A SG CYS 224 A CYS 227 1_555 A SG CYS 238 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 A SG CYS 336 A CYS 339 1_555 A SG CYS 593 A CYS 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 A SG CYS 342 A CYS 345 1_555 A SG CYS 374 A CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf11 A SG CYS 352 A CYS 355 1_555 A SG CYS 365 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 A SG CYS 399 A CYS 402 1_555 A SG CYS 671 A CYS 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf13 A SG CYS 415 A CYS 418 1_555 A SG CYS 634 A CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 A SG CYS 447 A CYS 450 1_555 A SG CYS 520 A CYS 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 A SG CYS 471 A CYS 474 1_555 A SG CYS 662 A CYS 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 A SG CYS 481 A CYS 484 1_555 A SG CYS 495 A CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf17 A SG CYS 492 A CYS 495 1_555 A SG CYS 503 A CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 A SG CYS 560 A CYS 563 1_555 A SG CYS 574 A CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf19 A SG CYS 612 A CYS 615 1_555 A SG CYS 617 A CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf20 B SG CYS 6 B CYS 9 1_555 B SG CYS 45 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf21 B SG CYS 16 B CYS 19 1_555 B SG CYS 36 B CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf22 B SG CYS 115 B CYS 118 1_555 B SG CYS 191 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf23 B SG CYS 134 B CYS 137 1_555 B SG CYS 328 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf24 B SG CYS 155 B CYS 158 1_555 B SG CYS 171 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf25 B SG CYS 158 B CYS 161 1_555 B SG CYS 176 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf26 B SG CYS 168 B CYS 171 1_555 B SG CYS 174 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf27 B SG CYS 224 B CYS 227 1_555 B SG CYS 238 B CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf28 B SG CYS 336 B CYS 339 1_555 B SG CYS 593 B CYS 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf29 B SG CYS 342 B CYS 345 1_555 B SG CYS 374 B CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf30 B SG CYS 352 B CYS 355 1_555 B SG CYS 365 B CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf31 B SG CYS 399 B CYS 402 1_555 B SG CYS 671 B CYS 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf32 B SG CYS 415 B CYS 418 1_555 B SG CYS 634 B CYS 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf33 B SG CYS 447 B CYS 450 1_555 B SG CYS 520 B CYS 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf34 B SG CYS 471 B CYS 474 1_555 B SG CYS 662 B CYS 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf35 B SG CYS 481 B CYS 484 1_555 B SG CYS 495 B CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf36 B SG CYS 492 B CYS 495 1_555 B SG CYS 503 B CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf37 B SG CYS 560 B CYS 563 1_555 B SG CYS 574 B CYS 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf38 B SG CYS 612 B CYS 615 1_555 B SG CYS 617 B CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 410 A ASN 413 1_555 C C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? covale ? covale2 B ND2 ASN 410 B ASN 413 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 C O4 NAG . D NAG 1 1_555 C C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 7Q1L _atom_sites.fract_transf_matrix[1][1] 0.011411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00979 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 1101 1101 GOL GOL . F 3 GOL A 1 1102 1301 GOL GOL . G 3 GOL A 1 1103 1401 GOL GOL . H 3 GOL A 1 1104 1501 GOL GOL . I 3 GOL A 1 1105 1502 GOL GOL . J 4 EDO A 1 1106 1503 EDO EDO . K 5 MG A 1 1107 1 MG MG . L 3 GOL B 1 701 701 GOL GOL . M 3 GOL B 1 702 801 GOL GOL . N 4 EDO B 1 703 802 EDO EDO . O 6 SO4 B 1 704 1 SO4 SO4 . P 6 SO4 B 1 705 2 SO4 SO4 . Q 7 HOH A 1 1201 12 HOH HOH . Q 7 HOH A 2 1202 16 HOH HOH . Q 7 HOH A 3 1203 14 HOH HOH . R 7 HOH B 1 801 11 HOH HOH . R 7 HOH B 2 802 9 HOH HOH . R 7 HOH B 3 803 10 HOH HOH . R 7 HOH B 4 804 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 -49.707 -0.365 -23.515 1 119.85 ? C1 GOL 1104 A 1 HETATM 2 O O1 GOL . . . H 3 -50.4 0.843 -23.624 1 118.81 ? O1 GOL 1104 A 1 HETATM 3 C C2 GOL . . . H 3 -48.208 0.001 -23.333 1 124.24 ? C2 GOL 1104 A 1 HETATM 4 O O2 GOL . . . H 3 -47.377 -0.906 -23.987 1 123.75 ? O2 GOL 1104 A 1 HETATM 5 C C3 GOL . . . H 3 -47.95 0.023 -21.799 1 121.86 ? C3 GOL 1104 A 1 HETATM 6 O O3 GOL . . . H 3 -47.702 1.356 -21.443 1 116.62 ? O3 GOL 1104 A 1 HETATM 7 H H11 GOL . . . H 3 -49.809 -0.927 -24.298 1 143.75 ? H11 GOL 1104 A 1 HETATM 8 H H12 GOL . . . H 3 -50.003 -0.9 -22.763 1 143.75 ? H12 GOL 1104 A 1 HETATM 9 H HO1 GOL . . . H 3 -51.203 0.648 -23.838 1 142.5 ? HO1 GOL 1104 A 1 HETATM 10 H H2 GOL . . . H 3 -48.032 0.874 -23.716 1 149.01 ? H2 GOL 1104 A 1 HETATM 11 H HO2 GOL . . . H 3 -47.667 -1.686 -23.82 1 148.43 ? HO2 GOL 1104 A 1 HETATM 12 H H31 GOL . . . H 3 -47.211 -0.573 -21.598 1 146.16 ? H31 GOL 1104 A 1 HETATM 13 H H32 GOL . . . H 3 -48.718 -0.36 -21.347 1 146.16 ? H32 GOL 1104 A 1 HETATM 14 H HO3 GOL . . . H 3 -47.521 1.359 -20.618 1 139.87 ? HO3 GOL 1104 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #