data_7Q1M # _model_server_result.job_id NqaktOs09coZQVT0yq_4Gw _model_server_result.datetime_utc '2024-11-26 15:30:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":604}' # _entry.id 7Q1M # _exptl.entry_id 7Q1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q1M _cell.length_a 154.77 _cell.length_b 154.77 _cell.length_c 127.71 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 624 NAG 2 n B FUC 2 B 2 FUC A 625 FUC 3 n C NAG 1 C 1 NAG A 627 NAG 3 n C NAG 2 C 2 NAG A 629 NAG 3 n C FUC 3 C 3 FUC A 628 FUC 3 n D NAG 1 D 1 NAG A 631 NAG 3 n D NAG 2 D 2 NAG A 632 NAG 3 n D FUC 3 D 3 FUC A 634 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 F C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 G C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 H C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 335 n n C1 O1 NAG sing 336 n n C1 O5 NAG sing 337 n n C1 H1 NAG sing 338 n n C2 C3 NAG sing 339 n n C2 N2 NAG sing 340 n n C2 H2 NAG sing 341 n n C3 C4 NAG sing 342 n n C3 O3 NAG sing 343 n n C3 H3 NAG sing 344 n n C4 C5 NAG sing 345 n n C4 O4 NAG sing 346 n n C4 H4 NAG sing 347 n n C5 C6 NAG sing 348 n n C5 O5 NAG sing 349 n n C5 H5 NAG sing 350 n n C6 O6 NAG sing 351 n n C6 H61 NAG sing 352 n n C6 H62 NAG sing 353 n n C7 C8 NAG sing 354 n n C7 N2 NAG sing 355 n n C7 O7 NAG doub 356 n n C8 H81 NAG sing 357 n n C8 H82 NAG sing 358 n n C8 H83 NAG sing 359 n n N2 HN2 NAG sing 360 n n O1 HO1 NAG sing 361 n n O3 HO3 NAG sing 362 n n O4 HO4 NAG sing 363 n n O6 HO6 NAG sing 364 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7Q1M _atom_sites.fract_transf_matrix[1][1] 0.006461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 SO4 A 1 601 622 SO4 SO4 . F 5 NAG A 1 602 626 NAG NAG . G 5 NAG A 1 603 630 NAG NAG . H 5 NAG A 1 604 635 NAG NAG . I 6 8IS A 1 605 637 8IS J1S . J 7 GOL A 1 606 638 GOL GOL . K 4 SO4 A 1 607 1 SO4 SO4 . L 4 SO4 A 1 608 2 SO4 SO4 . M 8 CL A 1 609 1 CL CL . N 8 CL A 1 610 2 CL CL . O 8 CL A 1 611 3 CL CL . P 8 CL A 1 612 4 CL CL . Q 8 CL A 1 613 5 CL CL . R 8 CL A 1 614 6 CL CL . S 9 HOH A 1 701 103 HOH HOH . S 9 HOH A 2 702 34 HOH HOH . S 9 HOH A 3 703 78 HOH HOH . S 9 HOH A 4 704 18 HOH HOH . S 9 HOH A 5 705 25 HOH HOH . S 9 HOH A 6 706 101 HOH HOH . S 9 HOH A 7 707 82 HOH HOH . S 9 HOH A 8 708 92 HOH HOH . S 9 HOH A 9 709 41 HOH HOH . S 9 HOH A 10 710 45 HOH HOH . S 9 HOH A 11 711 21 HOH HOH . S 9 HOH A 12 712 62 HOH HOH . S 9 HOH A 13 713 23 HOH HOH . S 9 HOH A 14 714 4 HOH HOH . S 9 HOH A 15 715 12 HOH HOH . S 9 HOH A 16 716 51 HOH HOH . S 9 HOH A 17 717 119 HOH HOH . S 9 HOH A 18 718 77 HOH HOH . S 9 HOH A 19 719 16 HOH HOH . S 9 HOH A 20 720 9 HOH HOH . S 9 HOH A 21 721 24 HOH HOH . S 9 HOH A 22 722 88 HOH HOH . S 9 HOH A 23 723 107 HOH HOH . S 9 HOH A 24 724 58 HOH HOH . S 9 HOH A 25 725 38 HOH HOH . S 9 HOH A 26 726 8 HOH HOH . S 9 HOH A 27 727 3 HOH HOH . S 9 HOH A 28 728 54 HOH HOH . S 9 HOH A 29 729 17 HOH HOH . S 9 HOH A 30 730 39 HOH HOH . S 9 HOH A 31 731 120 HOH HOH . S 9 HOH A 32 732 2 HOH HOH . S 9 HOH A 33 733 118 HOH HOH . S 9 HOH A 34 734 59 HOH HOH . S 9 HOH A 35 735 35 HOH HOH . S 9 HOH A 36 736 6 HOH HOH . S 9 HOH A 37 737 100 HOH HOH . S 9 HOH A 38 738 111 HOH HOH . S 9 HOH A 39 739 13 HOH HOH . S 9 HOH A 40 740 46 HOH HOH . S 9 HOH A 41 741 86 HOH HOH . S 9 HOH A 42 742 116 HOH HOH . S 9 HOH A 43 743 68 HOH HOH . S 9 HOH A 44 744 19 HOH HOH . S 9 HOH A 45 745 76 HOH HOH . S 9 HOH A 46 746 42 HOH HOH . S 9 HOH A 47 747 108 HOH HOH . S 9 HOH A 48 748 22 HOH HOH . S 9 HOH A 49 749 20 HOH HOH . S 9 HOH A 50 750 67 HOH HOH . S 9 HOH A 51 751 7 HOH HOH . S 9 HOH A 52 752 79 HOH HOH . S 9 HOH A 53 753 26 HOH HOH . S 9 HOH A 54 754 15 HOH HOH . S 9 HOH A 55 755 29 HOH HOH . S 9 HOH A 56 756 113 HOH HOH . S 9 HOH A 57 757 105 HOH HOH . S 9 HOH A 58 758 32 HOH HOH . S 9 HOH A 59 759 28 HOH HOH . S 9 HOH A 60 760 91 HOH HOH . S 9 HOH A 61 761 31 HOH HOH . S 9 HOH A 62 762 10 HOH HOH . S 9 HOH A 63 763 36 HOH HOH . S 9 HOH A 64 764 89 HOH HOH . S 9 HOH A 65 765 53 HOH HOH . S 9 HOH A 66 766 57 HOH HOH . S 9 HOH A 67 767 5 HOH HOH . S 9 HOH A 68 768 61 HOH HOH . S 9 HOH A 69 769 40 HOH HOH . S 9 HOH A 70 770 94 HOH HOH . S 9 HOH A 71 771 81 HOH HOH . S 9 HOH A 72 772 14 HOH HOH . S 9 HOH A 73 773 90 HOH HOH . S 9 HOH A 74 774 75 HOH HOH . S 9 HOH A 75 775 1 HOH HOH . S 9 HOH A 76 776 104 HOH HOH . S 9 HOH A 77 777 93 HOH HOH . S 9 HOH A 78 778 73 HOH HOH . S 9 HOH A 79 779 87 HOH HOH . S 9 HOH A 80 780 70 HOH HOH . S 9 HOH A 81 781 44 HOH HOH . S 9 HOH A 82 782 112 HOH HOH . S 9 HOH A 83 783 74 HOH HOH . S 9 HOH A 84 784 83 HOH HOH . S 9 HOH A 85 785 30 HOH HOH . S 9 HOH A 86 786 33 HOH HOH . S 9 HOH A 87 787 55 HOH HOH . S 9 HOH A 88 788 98 HOH HOH . S 9 HOH A 89 789 117 HOH HOH . S 9 HOH A 90 790 48 HOH HOH . S 9 HOH A 91 791 49 HOH HOH . S 9 HOH A 92 792 97 HOH HOH . S 9 HOH A 93 793 50 HOH HOH . S 9 HOH A 94 794 69 HOH HOH . S 9 HOH A 95 795 114 HOH HOH . S 9 HOH A 96 796 27 HOH HOH . S 9 HOH A 97 797 37 HOH HOH . S 9 HOH A 98 798 66 HOH HOH . S 9 HOH A 99 799 71 HOH HOH . S 9 HOH A 100 800 99 HOH HOH . S 9 HOH A 101 801 102 HOH HOH . S 9 HOH A 102 802 60 HOH HOH . S 9 HOH A 103 803 96 HOH HOH . S 9 HOH A 104 804 109 HOH HOH . S 9 HOH A 105 805 72 HOH HOH . S 9 HOH A 106 806 80 HOH HOH . S 9 HOH A 107 807 56 HOH HOH . S 9 HOH A 108 808 52 HOH HOH . S 9 HOH A 109 809 85 HOH HOH . S 9 HOH A 110 810 95 HOH HOH . S 9 HOH A 111 811 43 HOH HOH . S 9 HOH A 112 812 64 HOH HOH . S 9 HOH A 113 813 47 HOH HOH . S 9 HOH A 114 814 110 HOH HOH . S 9 HOH A 115 815 65 HOH HOH . S 9 HOH A 116 816 106 HOH HOH . S 9 HOH A 117 817 84 HOH HOH . S 9 HOH A 118 818 115 HOH HOH . S 9 HOH A 119 819 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 5 36.768 11.655 47.209 1 123.86 ? C1 NAG 604 A 1 HETATM 2 C C2 NAG . . . H 5 36.485 12.664 46.1 1 114.18 ? C2 NAG 604 A 1 HETATM 3 C C3 NAG . . . H 5 37.322 12.314 44.871 1 125.68 ? C3 NAG 604 A 1 HETATM 4 C C4 NAG . . . H 5 38.805 12.294 45.231 1 132.87 ? C4 NAG 604 A 1 HETATM 5 C C5 NAG . . . H 5 39.067 11.35 46.407 1 134.78 ? C5 NAG 604 A 1 HETATM 6 C C6 NAG . . . H 5 40.487 11.446 46.92 1 139.57 ? C6 NAG 604 A 1 HETATM 7 C C7 NAG . . . H 5 34.261 13.73 46.132 1 105.22 ? C7 NAG 604 A 1 HETATM 8 C C8 NAG . . . H 5 32.839 13.631 45.674 1 91.58 ? C8 NAG 604 A 1 HETATM 9 N N2 NAG . . . H 5 35.071 12.726 45.76 1 105.02 ? N2 NAG 604 A 1 HETATM 10 O O3 NAG . . . H 5 37.066 13.25 43.83 1 124.59 ? O3 NAG 604 A 1 HETATM 11 O O4 NAG . . . H 5 39.591 11.873 44.12 1 126.1 ? O4 NAG 604 A 1 HETATM 12 O O5 NAG . . . H 5 38.204 11.658 47.518 1 133.59 ? O5 NAG 604 A 1 HETATM 13 O O6 NAG . . . H 5 40.901 10.244 47.556 1 135.83 ? O6 NAG 604 A 1 HETATM 14 O O7 NAG . . . H 5 34.657 14.674 46.813 1 106.02 ? O7 NAG 604 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #