data_7Q1P # _model_server_result.job_id 6I5tB1IGAuRbN2m7pSZLYg _model_server_result.datetime_utc '2024-11-23 21:56:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":613}' # _entry.id 7Q1P # _exptl.entry_id 7Q1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q1P _cell.length_a 154.11 _cell.length_b 154.11 _cell.length_c 135.22 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 625 NAG 2 n B FUC 2 B 2 FUC A 627 FUC 3 n C NAG 1 C 1 NAG A 628 NAG 3 n C NAG 2 C 2 NAG A 630 NAG 3 n C FUC 3 C 3 FUC A 629 FUC 3 n D NAG 1 D 1 NAG A 632 NAG 3 n D NAG 2 D 2 NAG A 633 NAG 3 n D FUC 3 D 3 FUC A 634 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 E C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 F C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 G C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? metalc ? metalc1 Q NA NA . A NA 613 1_555 Z O HOH . A HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7Q1P _atom_sites.fract_transf_matrix[1][1] 0.006489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 601 624 NAG NAG . F 4 NAG A 1 602 631 NAG NAG . G 4 NAG A 1 603 635 NAG NAG . H 5 GOL A 1 604 636 GOL GOL . I 5 GOL A 1 605 637 GOL GOL . J 6 8UW A 1 606 638 8UW J2R . K 5 GOL A 1 607 640 GOL GOL . L 5 GOL A 1 608 641 GOL GOL . M 7 GOA A 1 609 642 GOA GOA . N 8 SO4 A 1 610 1 SO4 SO4 . O 8 SO4 A 1 611 8 SO4 SO4 . P 8 SO4 A 1 612 9 SO4 SO4 . Q 9 NA A 1 613 1 NA NA . R 10 CL A 1 614 2 CL CL . S 10 CL A 1 615 3 CL CL . T 10 CL A 1 616 4 CL CL . U 10 CL A 1 617 5 CL CL . V 10 CL A 1 618 6 CL CL . W 10 CL A 1 619 7 CL CL . X 10 CL A 1 620 8 CL CL . Y 10 CL A 1 621 9 CL CL . Z 11 HOH A 1 701 62 HOH HOH . Z 11 HOH A 2 702 113 HOH HOH . Z 11 HOH A 3 703 144 HOH HOH . Z 11 HOH A 4 704 72 HOH HOH . Z 11 HOH A 5 705 116 HOH HOH . Z 11 HOH A 6 706 9 HOH HOH . Z 11 HOH A 7 707 129 HOH HOH . Z 11 HOH A 8 708 37 HOH HOH . Z 11 HOH A 9 709 148 HOH HOH . Z 11 HOH A 10 710 59 HOH HOH . Z 11 HOH A 11 711 36 HOH HOH . Z 11 HOH A 12 712 12 HOH HOH . Z 11 HOH A 13 713 32 HOH HOH . Z 11 HOH A 14 714 43 HOH HOH . Z 11 HOH A 15 715 143 HOH HOH . Z 11 HOH A 16 716 24 HOH HOH . Z 11 HOH A 17 717 1 HOH HOH . Z 11 HOH A 18 718 26 HOH HOH . Z 11 HOH A 19 719 111 HOH HOH . Z 11 HOH A 20 720 21 HOH HOH . Z 11 HOH A 21 721 8 HOH HOH . Z 11 HOH A 22 722 44 HOH HOH . Z 11 HOH A 23 723 2 HOH HOH . Z 11 HOH A 24 724 136 HOH HOH . Z 11 HOH A 25 725 149 HOH HOH . Z 11 HOH A 26 726 19 HOH HOH . Z 11 HOH A 27 727 88 HOH HOH . Z 11 HOH A 28 728 51 HOH HOH . Z 11 HOH A 29 729 54 HOH HOH . Z 11 HOH A 30 730 7 HOH HOH . Z 11 HOH A 31 731 10 HOH HOH . Z 11 HOH A 32 732 106 HOH HOH . Z 11 HOH A 33 733 64 HOH HOH . Z 11 HOH A 34 734 4 HOH HOH . Z 11 HOH A 35 735 126 HOH HOH . Z 11 HOH A 36 736 115 HOH HOH . Z 11 HOH A 37 737 35 HOH HOH . Z 11 HOH A 38 738 71 HOH HOH . Z 11 HOH A 39 739 29 HOH HOH . Z 11 HOH A 40 740 18 HOH HOH . Z 11 HOH A 41 741 139 HOH HOH . Z 11 HOH A 42 742 134 HOH HOH . Z 11 HOH A 43 743 38 HOH HOH . Z 11 HOH A 44 744 105 HOH HOH . Z 11 HOH A 45 745 81 HOH HOH . Z 11 HOH A 46 746 58 HOH HOH . Z 11 HOH A 47 747 137 HOH HOH . Z 11 HOH A 48 748 20 HOH HOH . Z 11 HOH A 49 749 50 HOH HOH . Z 11 HOH A 50 750 121 HOH HOH . Z 11 HOH A 51 751 79 HOH HOH . Z 11 HOH A 52 752 133 HOH HOH . Z 11 HOH A 53 753 82 HOH HOH . Z 11 HOH A 54 754 60 HOH HOH . Z 11 HOH A 55 755 77 HOH HOH . Z 11 HOH A 56 756 16 HOH HOH . Z 11 HOH A 57 757 92 HOH HOH . Z 11 HOH A 58 758 28 HOH HOH . Z 11 HOH A 59 759 90 HOH HOH . Z 11 HOH A 60 760 40 HOH HOH . Z 11 HOH A 61 761 146 HOH HOH . Z 11 HOH A 62 762 23 HOH HOH . Z 11 HOH A 63 763 6 HOH HOH . Z 11 HOH A 64 764 52 HOH HOH . Z 11 HOH A 65 765 42 HOH HOH . Z 11 HOH A 66 766 13 HOH HOH . Z 11 HOH A 67 767 22 HOH HOH . Z 11 HOH A 68 768 56 HOH HOH . Z 11 HOH A 69 769 91 HOH HOH . Z 11 HOH A 70 770 127 HOH HOH . Z 11 HOH A 71 771 14 HOH HOH . Z 11 HOH A 72 772 15 HOH HOH . Z 11 HOH A 73 773 49 HOH HOH . Z 11 HOH A 74 774 128 HOH HOH . Z 11 HOH A 75 775 73 HOH HOH . Z 11 HOH A 76 776 99 HOH HOH . Z 11 HOH A 77 777 11 HOH HOH . Z 11 HOH A 78 778 27 HOH HOH . Z 11 HOH A 79 779 47 HOH HOH . Z 11 HOH A 80 780 78 HOH HOH . Z 11 HOH A 81 781 33 HOH HOH . Z 11 HOH A 82 782 48 HOH HOH . Z 11 HOH A 83 783 30 HOH HOH . Z 11 HOH A 84 784 114 HOH HOH . Z 11 HOH A 85 785 31 HOH HOH . Z 11 HOH A 86 786 25 HOH HOH . Z 11 HOH A 87 787 94 HOH HOH . Z 11 HOH A 88 788 57 HOH HOH . Z 11 HOH A 89 789 107 HOH HOH . Z 11 HOH A 90 790 65 HOH HOH . Z 11 HOH A 91 791 80 HOH HOH . Z 11 HOH A 92 792 135 HOH HOH . Z 11 HOH A 93 793 112 HOH HOH . Z 11 HOH A 94 794 17 HOH HOH . Z 11 HOH A 95 795 39 HOH HOH . Z 11 HOH A 96 796 3 HOH HOH . Z 11 HOH A 97 797 83 HOH HOH . Z 11 HOH A 98 798 74 HOH HOH . Z 11 HOH A 99 799 46 HOH HOH . Z 11 HOH A 100 800 45 HOH HOH . Z 11 HOH A 101 801 69 HOH HOH . Z 11 HOH A 102 802 142 HOH HOH . Z 11 HOH A 103 803 70 HOH HOH . Z 11 HOH A 104 804 55 HOH HOH . Z 11 HOH A 105 805 41 HOH HOH . Z 11 HOH A 106 806 68 HOH HOH . Z 11 HOH A 107 807 125 HOH HOH . Z 11 HOH A 108 808 109 HOH HOH . Z 11 HOH A 109 809 138 HOH HOH . Z 11 HOH A 110 810 122 HOH HOH . Z 11 HOH A 111 811 110 HOH HOH . Z 11 HOH A 112 812 53 HOH HOH . Z 11 HOH A 113 813 104 HOH HOH . Z 11 HOH A 114 814 67 HOH HOH . Z 11 HOH A 115 815 147 HOH HOH . Z 11 HOH A 116 816 98 HOH HOH . Z 11 HOH A 117 817 102 HOH HOH . Z 11 HOH A 118 818 103 HOH HOH . Z 11 HOH A 119 819 96 HOH HOH . Z 11 HOH A 120 820 89 HOH HOH . Z 11 HOH A 121 821 145 HOH HOH . Z 11 HOH A 122 822 76 HOH HOH . Z 11 HOH A 123 823 66 HOH HOH . Z 11 HOH A 124 824 85 HOH HOH . Z 11 HOH A 125 825 63 HOH HOH . Z 11 HOH A 126 826 117 HOH HOH . Z 11 HOH A 127 827 140 HOH HOH . Z 11 HOH A 128 828 5 HOH HOH . Z 11 HOH A 129 829 100 HOH HOH . Z 11 HOH A 130 830 75 HOH HOH . Z 11 HOH A 131 831 93 HOH HOH . Z 11 HOH A 132 832 124 HOH HOH . Z 11 HOH A 133 833 86 HOH HOH . Z 11 HOH A 134 834 61 HOH HOH . Z 11 HOH A 135 835 123 HOH HOH . Z 11 HOH A 136 836 101 HOH HOH . Z 11 HOH A 137 837 84 HOH HOH . Z 11 HOH A 138 838 87 HOH HOH . Z 11 HOH A 139 839 118 HOH HOH . Z 11 HOH A 140 840 141 HOH HOH . Z 11 HOH A 141 841 120 HOH HOH . Z 11 HOH A 142 842 131 HOH HOH . Z 11 HOH A 143 843 132 HOH HOH . Z 11 HOH A 144 844 119 HOH HOH . Z 11 HOH A 145 845 95 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 9 _atom_site.Cartn_x 18.575 _atom_site.Cartn_y 29.442 _atom_site.Cartn_z 63.058 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 89.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 613 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #