data_7Q1R # _model_server_result.job_id CiXzkPqhporolZEDQa0Abg _model_server_result.datetime_utc '2024-11-09 02:26:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 7Q1R # _exptl.entry_id 7Q1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q1R _cell.length_a 35.096 _cell.length_b 35.096 _cell.length_c 92.433 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 31 A GLY 30 1_555 A N NH2 32 A NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 B C ACE 1 B ACE 101 1_555 B N GLY 2 B GLY 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C GLY 31 B GLY 131 1_555 B N NH2 32 B NH2 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? metalc ? metalc1 D NA NA . A NA 102 1_555 E O HOH . A HOH 214 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc2 D NA NA . A NA 102 1_555 E O HOH . A HOH 238 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc3 D NA NA . A NA 102 1_555 F O HOH . B HOH 203 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7Q1R _atom_sites.fract_transf_matrix[1][1] 0.028493 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EOH A 1 101 101 EOH EOH . D 3 NA A 1 102 1 NA NA . E 4 HOH A 1 201 84 HOH HOH . E 4 HOH A 2 202 9 HOH HOH . E 4 HOH A 3 203 67 HOH HOH . E 4 HOH A 4 204 65 HOH HOH . E 4 HOH A 5 205 42 HOH HOH . E 4 HOH A 6 206 92 HOH HOH . E 4 HOH A 7 207 77 HOH HOH . E 4 HOH A 8 208 35 HOH HOH . E 4 HOH A 9 209 89 HOH HOH . E 4 HOH A 10 210 22 HOH HOH . E 4 HOH A 11 211 19 HOH HOH . E 4 HOH A 12 212 6 HOH HOH . E 4 HOH A 13 213 10 HOH HOH . E 4 HOH A 14 214 5 HOH HOH . E 4 HOH A 15 215 2 HOH HOH . E 4 HOH A 16 216 18 HOH HOH . E 4 HOH A 17 217 17 HOH HOH . E 4 HOH A 18 218 14 HOH HOH . E 4 HOH A 19 219 7 HOH HOH . E 4 HOH A 20 220 49 HOH HOH . E 4 HOH A 21 221 50 HOH HOH . E 4 HOH A 22 222 1 HOH HOH . E 4 HOH A 23 223 51 HOH HOH . E 4 HOH A 24 224 15 HOH HOH . E 4 HOH A 25 225 37 HOH HOH . E 4 HOH A 26 226 71 HOH HOH . E 4 HOH A 27 227 36 HOH HOH . E 4 HOH A 28 228 70 HOH HOH . E 4 HOH A 29 229 16 HOH HOH . E 4 HOH A 30 230 80 HOH HOH . E 4 HOH A 31 231 12 HOH HOH . E 4 HOH A 32 232 40 HOH HOH . E 4 HOH A 33 233 20 HOH HOH . E 4 HOH A 34 234 41 HOH HOH . E 4 HOH A 35 235 47 HOH HOH . E 4 HOH A 36 236 83 HOH HOH . E 4 HOH A 37 237 38 HOH HOH . E 4 HOH A 38 238 3 HOH HOH . E 4 HOH A 39 239 79 HOH HOH . E 4 HOH A 40 240 66 HOH HOH . E 4 HOH A 41 241 69 HOH HOH . E 4 HOH A 42 242 8 HOH HOH . E 4 HOH A 43 243 44 HOH HOH . E 4 HOH A 44 244 46 HOH HOH . E 4 HOH A 45 245 21 HOH HOH . E 4 HOH A 46 246 64 HOH HOH . E 4 HOH A 47 247 93 HOH HOH . E 4 HOH A 48 248 13 HOH HOH . E 4 HOH A 49 249 11 HOH HOH . E 4 HOH A 50 250 39 HOH HOH . E 4 HOH A 51 251 4 HOH HOH . E 4 HOH A 52 252 72 HOH HOH . E 4 HOH A 53 253 48 HOH HOH . F 4 HOH B 1 201 85 HOH HOH . F 4 HOH B 2 202 60 HOH HOH . F 4 HOH B 3 203 75 HOH HOH . F 4 HOH B 4 204 23 HOH HOH . F 4 HOH B 5 205 68 HOH HOH . F 4 HOH B 6 206 34 HOH HOH . F 4 HOH B 7 207 91 HOH HOH . F 4 HOH B 8 208 62 HOH HOH . F 4 HOH B 9 209 82 HOH HOH . F 4 HOH B 10 210 26 HOH HOH . F 4 HOH B 11 211 78 HOH HOH . F 4 HOH B 12 212 32 HOH HOH . F 4 HOH B 13 213 76 HOH HOH . F 4 HOH B 14 214 52 HOH HOH . F 4 HOH B 15 215 43 HOH HOH . F 4 HOH B 16 216 90 HOH HOH . F 4 HOH B 17 217 29 HOH HOH . F 4 HOH B 18 218 54 HOH HOH . F 4 HOH B 19 219 63 HOH HOH . F 4 HOH B 20 220 53 HOH HOH . F 4 HOH B 21 221 61 HOH HOH . F 4 HOH B 22 222 86 HOH HOH . F 4 HOH B 23 223 33 HOH HOH . F 4 HOH B 24 224 25 HOH HOH . F 4 HOH B 25 225 30 HOH HOH . F 4 HOH B 26 226 74 HOH HOH . F 4 HOH B 27 227 27 HOH HOH . F 4 HOH B 28 228 56 HOH HOH . F 4 HOH B 29 229 73 HOH HOH . F 4 HOH B 30 230 24 HOH HOH . F 4 HOH B 31 231 59 HOH HOH . F 4 HOH B 32 232 28 HOH HOH . F 4 HOH B 33 233 55 HOH HOH . F 4 HOH B 34 234 45 HOH HOH . F 4 HOH B 35 235 58 HOH HOH . F 4 HOH B 36 236 57 HOH HOH . F 4 HOH B 37 237 31 HOH HOH . F 4 HOH B 38 238 87 HOH HOH . F 4 HOH B 39 239 81 HOH HOH . F 4 HOH B 40 240 88 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 4.787 _atom_site.Cartn_y 5.763 _atom_site.Cartn_z 18.403 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #