data_7Q1U # _model_server_result.job_id iSqAS8AZt0HkP50-7sggCA _model_server_result.datetime_utc '2024-11-21 14:13:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 7Q1U # _exptl.entry_id 7Q1U _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q1U _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 165 B CYS 166 1_555 B SG CYS 188 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 815 B CYS 816 1_555 B SG CYS 888 B CYS 889 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A C TRP 386 A TRP 386 1_555 A N P1L 387 A P1L 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C P1L 387 A P1L 387 1_555 A N TRP 388 A TRP 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A SG CYS 324 A CYS 324 1_555 D FE HEM . A HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 E OAU HD6 . A HD6 603 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 7Q1U _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CLR A 1 601 494 CLR CLR . D 4 HEM A 1 602 495 HEM HEM . E 5 HD6 A 1 603 496 HD6 XYX . F 6 MG A 1 604 497 MG MG . G 7 PLM A 1 605 498 PLM PLM . H 7 PLM A 1 606 501 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 4 168.303 175.542 201.406 1 42.54 ? CHA HEM 602 A 1 HETATM 2 C CHB HEM . . . D 4 170.201 179.793 200.054 1 42.54 ? CHB HEM 602 A 1 HETATM 3 C CHC HEM . . . D 4 165.889 181.075 198.152 1 42.54 ? CHC HEM 602 A 1 HETATM 4 C CHD HEM . . . D 4 164.083 176.719 199.326 1 42.54 ? CHD HEM 602 A 1 HETATM 5 C C1A HEM . . . D 4 169.14 176.606 201.237 1 42.54 ? C1A HEM 602 A 1 HETATM 6 C C2A HEM . . . D 4 170.477 176.682 201.824 1 42.54 ? C2A HEM 602 A 1 HETATM 7 C C3A HEM . . . D 4 171.017 177.846 201.465 1 42.54 ? C3A HEM 602 A 1 HETATM 8 C C4A HEM . . . D 4 170.036 178.542 200.635 1 42.54 ? C4A HEM 602 A 1 HETATM 9 C CMA HEM . . . D 4 172.38 178.349 201.839 1 42.54 ? CMA HEM 602 A 1 HETATM 10 C CAA HEM . . . D 4 171.116 175.643 202.674 1 42.54 ? CAA HEM 602 A 1 HETATM 11 C CBA HEM . . . D 4 172.327 175.015 201.948 1 42.54 ? CBA HEM 602 A 1 HETATM 12 C CGA HEM . . . D 4 171.874 174.22 200.752 1 42.54 ? CGA HEM 602 A 1 HETATM 13 O O1A HEM . . . D 4 171.265 173.139 200.914 1 42.54 ? O1A HEM 602 A 1 HETATM 14 O O2A HEM . . . D 4 172.108 174.643 199.593 1 42.54 ? O2A HEM 602 A 1 HETATM 15 C C1B HEM . . . D 4 169.183 180.47 199.454 1 42.54 ? C1B HEM 602 A 1 HETATM 16 C C2B HEM . . . D 4 169.326 181.817 198.96 1 42.54 ? C2B HEM 602 A 1 HETATM 17 C C3B HEM . . . D 4 168.129 182.18 198.429 1 42.54 ? C3B HEM 602 A 1 HETATM 18 C C4B HEM . . . D 4 167.229 181.064 198.588 1 42.54 ? C4B HEM 602 A 1 HETATM 19 C CMB HEM . . . D 4 170.574 182.666 199.022 1 42.54 ? CMB HEM 602 A 1 HETATM 20 C CAB HEM . . . D 4 167.802 183.485 197.801 1 42.54 ? CAB HEM 602 A 1 HETATM 21 C CBB HEM . . . D 4 168.636 184.029 196.939 1 42.54 ? CBB HEM 602 A 1 HETATM 22 C C1C HEM . . . D 4 165.04 179.99 198.309 1 42.54 ? C1C HEM 602 A 1 HETATM 23 C C2C HEM . . . D 4 163.658 179.963 197.855 1 42.54 ? C2C HEM 602 A 1 HETATM 24 C C3C HEM . . . D 4 163.169 178.74 198.191 1 42.54 ? C3C HEM 602 A 1 HETATM 25 C C4C HEM . . . D 4 164.249 178.012 198.852 1 42.54 ? C4C HEM 602 A 1 HETATM 26 C CMC HEM . . . D 4 162.917 181.072 197.152 1 42.54 ? CMC HEM 602 A 1 HETATM 27 C CAC HEM . . . D 4 161.79 178.265 197.92 1 42.54 ? CAC HEM 602 A 1 HETATM 28 C CBC HEM . . . D 4 161.543 176.984 197.63 1 42.54 ? CBC HEM 602 A 1 HETATM 29 C C1D HEM . . . D 4 165.069 176.027 200.014 1 42.54 ? C1D HEM 602 A 1 HETATM 30 C C2D HEM . . . D 4 164.907 174.714 200.589 1 42.54 ? C2D HEM 602 A 1 HETATM 31 C C3D HEM . . . D 4 166.102 174.397 201.171 1 42.54 ? C3D HEM 602 A 1 HETATM 32 C C4D HEM . . . D 4 167 175.514 200.952 1 42.54 ? C4D HEM 602 A 1 HETATM 33 C CMD HEM . . . D 4 163.674 173.869 200.555 1 42.54 ? CMD HEM 602 A 1 HETATM 34 C CAD HEM . . . D 4 166.43 173.155 201.887 1 42.54 ? CAD HEM 602 A 1 HETATM 35 C CBD HEM . . . D 4 166.521 173.465 203.41 1 42.54 ? CBD HEM 602 A 1 HETATM 36 C CGD HEM . . . D 4 166.906 172.249 204.126 1 42.54 ? CGD HEM 602 A 1 HETATM 37 O O1D HEM . . . D 4 168.103 172.093 204.508 1 42.54 ? O1D HEM 602 A 1 HETATM 38 O O2D HEM . . . D 4 166.043 171.352 204.364 1 42.54 ? O2D HEM 602 A 1 HETATM 39 N NA HEM . . . D 4 168.932 177.753 200.534 1 42.54 ? NA HEM 602 A 1 HETATM 40 N NB HEM . . . D 4 167.904 180.065 199.204 1 42.54 ? NB HEM 602 A 1 HETATM 41 N NC HEM . . . D 4 165.332 178.806 198.893 1 42.54 ? NC HEM 602 A 1 HETATM 42 N ND HEM . . . D 4 166.344 176.456 200.262 1 42.54 ? ND HEM 602 A 1 HETATM 43 FE FE HEM . . . D 4 167.126 178.2 199.703 1 42.54 ? FE HEM 602 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #