data_7Q2F # _model_server_result.job_id AHET-3za4J6RAJQr4h9KHQ _model_server_result.datetime_utc '2024-11-26 15:21:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q2f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7Q2F # _exptl.entry_id 7Q2F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.204 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6-dimethyl-1~{H}-benzimidazol-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Q2F _cell.length_a 57.11 _cell.length_b 57.11 _cell.length_c 204.46 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q2F _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C9 H11 N3' _chem_comp.formula_weight 161.204 _chem_comp.id 6RQ _chem_comp.mon_nstd_flag . _chem_comp.name 5,6-dimethyl-1~{H}-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 6RQ sing 1 n n C2 C3 6RQ doub 2 n y C2 C7 6RQ sing 3 n y C3 C4 6RQ sing 4 n y C8 C7 6RQ sing 5 n n C7 C6 6RQ doub 6 n y C4 N10 6RQ sing 7 n y C4 C5 6RQ doub 8 n y C6 C5 6RQ sing 9 n y N10 C11 6RQ doub 10 n y C5 N9 6RQ sing 11 n y C11 N9 6RQ sing 12 n y C11 N12 6RQ sing 13 n n C6 H1 6RQ sing 14 n n C8 H2 6RQ sing 15 n n C8 H3 6RQ sing 16 n n C8 H4 6RQ sing 17 n n C1 H5 6RQ sing 18 n n C1 H6 6RQ sing 19 n n C1 H7 6RQ sing 20 n n C3 H8 6RQ sing 21 n n N9 H9 6RQ sing 22 n n N12 H11 6RQ sing 23 n n N12 H12 6RQ sing 24 n n # _atom_sites.entry_id 7Q2F _atom_sites.fract_transf_matrix[1][1] 0.01751 _atom_sites.fract_transf_matrix[1][2] 0.010109 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 401 EDO EDO . C 3 6RQ A 1 402 1 6RQ 585 . D 3 6RQ A 1 403 2 6RQ 585 . E 4 DMS A 1 404 1 DMS DMS . F 4 DMS A 1 405 2 DMS DMS . G 5 HOH A 1 501 115 HOH HOH . G 5 HOH A 2 502 78 HOH HOH . G 5 HOH A 3 503 125 HOH HOH . G 5 HOH A 4 504 2 HOH HOH . G 5 HOH A 5 505 27 HOH HOH . G 5 HOH A 6 506 87 HOH HOH . G 5 HOH A 7 507 158 HOH HOH . G 5 HOH A 8 508 135 HOH HOH . G 5 HOH A 9 509 9 HOH HOH . G 5 HOH A 10 510 62 HOH HOH . G 5 HOH A 11 511 85 HOH HOH . G 5 HOH A 12 512 7 HOH HOH . G 5 HOH A 13 513 136 HOH HOH . G 5 HOH A 14 514 10 HOH HOH . G 5 HOH A 15 515 41 HOH HOH . G 5 HOH A 16 516 96 HOH HOH . G 5 HOH A 17 517 137 HOH HOH . G 5 HOH A 18 518 79 HOH HOH . G 5 HOH A 19 519 81 HOH HOH . G 5 HOH A 20 520 99 HOH HOH . G 5 HOH A 21 521 46 HOH HOH . G 5 HOH A 22 522 4 HOH HOH . G 5 HOH A 23 523 168 HOH HOH . G 5 HOH A 24 524 77 HOH HOH . G 5 HOH A 25 525 101 HOH HOH . G 5 HOH A 26 526 51 HOH HOH . G 5 HOH A 27 527 22 HOH HOH . G 5 HOH A 28 528 37 HOH HOH . G 5 HOH A 29 529 147 HOH HOH . G 5 HOH A 30 530 33 HOH HOH . G 5 HOH A 31 531 67 HOH HOH . G 5 HOH A 32 532 28 HOH HOH . G 5 HOH A 33 533 38 HOH HOH . G 5 HOH A 34 534 90 HOH HOH . G 5 HOH A 35 535 82 HOH HOH . G 5 HOH A 36 536 89 HOH HOH . G 5 HOH A 37 537 73 HOH HOH . G 5 HOH A 38 538 94 HOH HOH . G 5 HOH A 39 539 20 HOH HOH . G 5 HOH A 40 540 55 HOH HOH . G 5 HOH A 41 541 48 HOH HOH . G 5 HOH A 42 542 15 HOH HOH . G 5 HOH A 43 543 119 HOH HOH . G 5 HOH A 44 544 156 HOH HOH . G 5 HOH A 45 545 92 HOH HOH . G 5 HOH A 46 546 88 HOH HOH . G 5 HOH A 47 547 165 HOH HOH . G 5 HOH A 48 548 12 HOH HOH . G 5 HOH A 49 549 162 HOH HOH . G 5 HOH A 50 550 108 HOH HOH . G 5 HOH A 51 551 83 HOH HOH . G 5 HOH A 52 552 116 HOH HOH . G 5 HOH A 53 553 84 HOH HOH . G 5 HOH A 54 554 53 HOH HOH . G 5 HOH A 55 555 72 HOH HOH . G 5 HOH A 56 556 80 HOH HOH . G 5 HOH A 57 557 95 HOH HOH . G 5 HOH A 58 558 167 HOH HOH . G 5 HOH A 59 559 1 HOH HOH . G 5 HOH A 60 560 60 HOH HOH . G 5 HOH A 61 561 131 HOH HOH . G 5 HOH A 62 562 100 HOH HOH . G 5 HOH A 63 563 74 HOH HOH . G 5 HOH A 64 564 127 HOH HOH . G 5 HOH A 65 565 59 HOH HOH . G 5 HOH A 66 566 8 HOH HOH . G 5 HOH A 67 567 103 HOH HOH . G 5 HOH A 68 568 42 HOH HOH . G 5 HOH A 69 569 102 HOH HOH . G 5 HOH A 70 570 35 HOH HOH . G 5 HOH A 71 571 18 HOH HOH . G 5 HOH A 72 572 6 HOH HOH . G 5 HOH A 73 573 36 HOH HOH . G 5 HOH A 74 574 133 HOH HOH . G 5 HOH A 75 575 23 HOH HOH . G 5 HOH A 76 576 65 HOH HOH . G 5 HOH A 77 577 69 HOH HOH . G 5 HOH A 78 578 154 HOH HOH . G 5 HOH A 79 579 63 HOH HOH . G 5 HOH A 80 580 17 HOH HOH . G 5 HOH A 81 581 3 HOH HOH . G 5 HOH A 82 582 54 HOH HOH . G 5 HOH A 83 583 169 HOH HOH . G 5 HOH A 84 584 52 HOH HOH . G 5 HOH A 85 585 39 HOH HOH . G 5 HOH A 86 586 104 HOH HOH . G 5 HOH A 87 587 26 HOH HOH . G 5 HOH A 88 588 32 HOH HOH . G 5 HOH A 89 589 29 HOH HOH . G 5 HOH A 90 590 43 HOH HOH . G 5 HOH A 91 591 155 HOH HOH . G 5 HOH A 92 592 134 HOH HOH . G 5 HOH A 93 593 91 HOH HOH . G 5 HOH A 94 594 106 HOH HOH . G 5 HOH A 95 595 132 HOH HOH . G 5 HOH A 96 596 105 HOH HOH . G 5 HOH A 97 597 58 HOH HOH . G 5 HOH A 98 598 76 HOH HOH . G 5 HOH A 99 599 16 HOH HOH . G 5 HOH A 100 600 130 HOH HOH . G 5 HOH A 101 601 44 HOH HOH . G 5 HOH A 102 602 128 HOH HOH . G 5 HOH A 103 603 56 HOH HOH . G 5 HOH A 104 604 19 HOH HOH . G 5 HOH A 105 605 166 HOH HOH . G 5 HOH A 106 606 68 HOH HOH . G 5 HOH A 107 607 129 HOH HOH . G 5 HOH A 108 608 49 HOH HOH . G 5 HOH A 109 609 93 HOH HOH . G 5 HOH A 110 610 152 HOH HOH . G 5 HOH A 111 611 47 HOH HOH . G 5 HOH A 112 612 157 HOH HOH . G 5 HOH A 113 613 66 HOH HOH . G 5 HOH A 114 614 70 HOH HOH . G 5 HOH A 115 615 21 HOH HOH . G 5 HOH A 116 616 121 HOH HOH . G 5 HOH A 117 617 61 HOH HOH . G 5 HOH A 118 618 50 HOH HOH . G 5 HOH A 119 619 107 HOH HOH . G 5 HOH A 120 620 97 HOH HOH . G 5 HOH A 121 621 71 HOH HOH . G 5 HOH A 122 622 86 HOH HOH . G 5 HOH A 123 623 13 HOH HOH . G 5 HOH A 124 624 45 HOH HOH . G 5 HOH A 125 625 142 HOH HOH . G 5 HOH A 126 626 170 HOH HOH . G 5 HOH A 127 627 150 HOH HOH . G 5 HOH A 128 628 146 HOH HOH . G 5 HOH A 129 629 160 HOH HOH . G 5 HOH A 130 630 114 HOH HOH . G 5 HOH A 131 631 149 HOH HOH . G 5 HOH A 132 632 123 HOH HOH . G 5 HOH A 133 633 148 HOH HOH . G 5 HOH A 134 634 159 HOH HOH . G 5 HOH A 135 635 171 HOH HOH . G 5 HOH A 136 636 153 HOH HOH . G 5 HOH A 137 637 118 HOH HOH . G 5 HOH A 138 638 143 HOH HOH . G 5 HOH A 139 639 163 HOH HOH . G 5 HOH A 140 640 138 HOH HOH . G 5 HOH A 141 641 117 HOH HOH . G 5 HOH A 142 642 126 HOH HOH . G 5 HOH A 143 643 161 HOH HOH . G 5 HOH A 144 644 151 HOH HOH . G 5 HOH A 145 645 164 HOH HOH . G 5 HOH A 146 646 122 HOH HOH . G 5 HOH A 147 647 139 HOH HOH . G 5 HOH A 148 648 64 HOH HOH . G 5 HOH A 149 649 120 HOH HOH . G 5 HOH A 150 650 110 HOH HOH . G 5 HOH A 151 651 145 HOH HOH . G 5 HOH A 152 652 111 HOH HOH . G 5 HOH A 153 653 113 HOH HOH . G 5 HOH A 154 654 25 HOH HOH . G 5 HOH A 155 655 144 HOH HOH . G 5 HOH A 156 656 140 HOH HOH . G 5 HOH A 157 657 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6RQ . . . D 3 36.091 25.426 2.843 1 52.01 ? C4 6RQ 403 A 1 HETATM 2 C C5 6RQ . . . D 3 36.146 25.369 4.231 1 47.44 ? C5 6RQ 403 A 1 HETATM 3 C C6 6RQ . . . D 3 35.235 26.193 5.036 1 48.57 ? C6 6RQ 403 A 1 HETATM 4 C C7 6RQ . . . D 3 34.288 27.061 4.427 1 51.54 ? C7 6RQ 403 A 1 HETATM 5 C C8 6RQ . . . D 3 33.331 27.927 5.302 1 60.62 ? C8 6RQ 403 A 1 HETATM 6 C C11 6RQ . . . D 3 37.749 23.915 3.349 1 56.07 ? C11 6RQ 403 A 1 HETATM 7 C C2 6RQ . . . D 3 34.208 27.139 2.959 1 55.45 ? C2 6RQ 403 A 1 HETATM 8 C C1 6RQ . . . D 3 33.148 28.106 2.292 1 61.03 ? C1 6RQ 403 A 1 HETATM 9 C C3 6RQ . . . D 3 35.099 26.33 2.183 1 50.7 ? C3 6RQ 403 A 1 HETATM 10 N N9 6RQ . . . D 3 37.171 24.438 4.548 1 47.21 ? N9 6RQ 403 A 1 HETATM 11 N N10 6RQ . . . D 3 37.097 24.513 2.299 1 51.46 ? N10 6RQ 403 A 1 HETATM 12 N N12 6RQ . . . D 3 38.823 22.936 3.338 1 55.14 ? N12 6RQ 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #