data_7Q2P # _model_server_result.job_id M3_OmQhvomY-wuTmxzFYng _model_server_result.datetime_utc '2024-10-20 00:31:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7q2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 7Q2P # _exptl.entry_id 7Q2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.381 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Q2P _cell.length_a 55.814 _cell.length_b 70.517 _cell.length_c 178.797 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Q2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 AAA CYS 66 1_555 A SG CYS 160 AAA CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? disulf ? disulf2 A SG CYS 106 AAA CYS 106 1_555 A SG CYS 119 AAA CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? disulf ? disulf3 B SG CYS 66 BBB CYS 66 1_555 B SG CYS 160 BBB CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 B SG CYS 106 BBB CYS 106 1_555 B SG CYS 119 BBB CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? # _chem_comp.formula 'C18 H22 N2' _chem_comp.formula_weight 266.381 _chem_comp.id DSM _chem_comp.mon_nstd_flag . _chem_comp.name 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Desipramine;Norpramin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 N2 DSM sing 83 n n C18 H181 DSM sing 84 n n C18 H182 DSM sing 85 n n C18 H183 DSM sing 86 n n N2 C17 DSM sing 87 n n N2 HN2 DSM sing 88 n n C17 C16 DSM sing 89 n n C17 H171 DSM sing 90 n n C17 H172 DSM sing 91 n n C16 C15 DSM sing 92 n n C16 H161 DSM sing 93 n n C16 H162 DSM sing 94 n n C15 N1 DSM sing 95 n n C15 H151 DSM sing 96 n n C15 H152 DSM sing 97 n n N1 C11 DSM sing 98 n n N1 C14 DSM sing 99 n n C14 C1 DSM sing 100 n y C14 C13 DSM doub 101 n y C1 C2 DSM doub 102 n y C1 H1 DSM sing 103 n n C2 C3 DSM sing 104 n y C2 H2 DSM sing 105 n n C3 C4 DSM doub 106 n y C3 H3 DSM sing 107 n n C4 C13 DSM sing 108 n y C4 H4 DSM sing 109 n n C13 C5 DSM sing 110 n n C5 C6 DSM sing 111 n n C5 H51 DSM sing 112 n n C5 H52 DSM sing 113 n n C6 C12 DSM sing 114 n n C6 H61 DSM sing 115 n n C6 H62 DSM sing 116 n n C12 C11 DSM doub 117 n y C12 C7 DSM sing 118 n y C11 C10 DSM sing 119 n y C7 C8 DSM doub 120 n y C7 H7 DSM sing 121 n n C8 C9 DSM sing 122 n y C8 H8 DSM sing 123 n n C9 C10 DSM doub 124 n y C9 H9 DSM sing 125 n n C10 H10 DSM sing 126 n n # _atom_sites.entry_id 7Q2P _atom_sites.fract_transf_matrix[1][1] 0.017917 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO AAA 1 501 501 EDO EDO . D 3 DSM AAA 1 502 705 DSM DSM . E 3 DSM AAA 1 503 706 DSM DSM . F 4 SO4 AAA 1 504 1 SO4 SO4 . G 5 CL AAA 1 505 1 CL CL . H 5 CL AAA 1 506 2 CL CL . I 2 EDO BBB 1 301 301 EDO EDO . J 3 DSM BBB 1 302 302 DSM DSM . K 4 SO4 BBB 1 303 2 SO4 SO4 . L 6 HOH AAA 1 601 238 HOH HOH . L 6 HOH AAA 2 602 152 HOH HOH . L 6 HOH AAA 3 603 127 HOH HOH . L 6 HOH AAA 4 604 123 HOH HOH . L 6 HOH AAA 5 605 153 HOH HOH . L 6 HOH AAA 6 606 199 HOH HOH . L 6 HOH AAA 7 607 111 HOH HOH . L 6 HOH AAA 8 608 189 HOH HOH . L 6 HOH AAA 9 609 66 HOH HOH . L 6 HOH AAA 10 610 5 HOH HOH . L 6 HOH AAA 11 611 131 HOH HOH . L 6 HOH AAA 12 612 185 HOH HOH . L 6 HOH AAA 13 613 59 HOH HOH . L 6 HOH AAA 14 614 237 HOH HOH . L 6 HOH AAA 15 615 55 HOH HOH . L 6 HOH AAA 16 616 27 HOH HOH . L 6 HOH AAA 17 617 112 HOH HOH . L 6 HOH AAA 18 618 73 HOH HOH . L 6 HOH AAA 19 619 68 HOH HOH . L 6 HOH AAA 20 620 36 HOH HOH . L 6 HOH AAA 21 621 107 HOH HOH . L 6 HOH AAA 22 622 93 HOH HOH . L 6 HOH AAA 23 623 191 HOH HOH . L 6 HOH AAA 24 624 105 HOH HOH . L 6 HOH AAA 25 625 48 HOH HOH . L 6 HOH AAA 26 626 40 HOH HOH . L 6 HOH AAA 27 627 58 HOH HOH . L 6 HOH AAA 28 628 122 HOH HOH . L 6 HOH AAA 29 629 174 HOH HOH . L 6 HOH AAA 30 630 156 HOH HOH . L 6 HOH AAA 31 631 15 HOH HOH . L 6 HOH AAA 32 632 16 HOH HOH . L 6 HOH AAA 33 633 46 HOH HOH . L 6 HOH AAA 34 634 150 HOH HOH . L 6 HOH AAA 35 635 22 HOH HOH . L 6 HOH AAA 36 636 89 HOH HOH . L 6 HOH AAA 37 637 7 HOH HOH . L 6 HOH AAA 38 638 188 HOH HOH . L 6 HOH AAA 39 639 239 HOH HOH . L 6 HOH AAA 40 640 21 HOH HOH . L 6 HOH AAA 41 641 95 HOH HOH . L 6 HOH AAA 42 642 62 HOH HOH . L 6 HOH AAA 43 643 75 HOH HOH . L 6 HOH AAA 44 644 117 HOH HOH . L 6 HOH AAA 45 645 44 HOH HOH . L 6 HOH AAA 46 646 85 HOH HOH . L 6 HOH AAA 47 647 91 HOH HOH . L 6 HOH AAA 48 648 42 HOH HOH . L 6 HOH AAA 49 649 33 HOH HOH . L 6 HOH AAA 50 650 151 HOH HOH . L 6 HOH AAA 51 651 213 HOH HOH . L 6 HOH AAA 52 652 202 HOH HOH . L 6 HOH AAA 53 653 41 HOH HOH . L 6 HOH AAA 54 654 154 HOH HOH . L 6 HOH AAA 55 655 229 HOH HOH . L 6 HOH AAA 56 656 74 HOH HOH . L 6 HOH AAA 57 657 142 HOH HOH . L 6 HOH AAA 58 658 34 HOH HOH . L 6 HOH AAA 59 659 6 HOH HOH . L 6 HOH AAA 60 660 83 HOH HOH . L 6 HOH AAA 61 661 23 HOH HOH . L 6 HOH AAA 62 662 28 HOH HOH . L 6 HOH AAA 63 663 129 HOH HOH . L 6 HOH AAA 64 664 80 HOH HOH . L 6 HOH AAA 65 665 26 HOH HOH . L 6 HOH AAA 66 666 100 HOH HOH . L 6 HOH AAA 67 667 206 HOH HOH . L 6 HOH AAA 68 668 13 HOH HOH . L 6 HOH AAA 69 669 81 HOH HOH . L 6 HOH AAA 70 670 215 HOH HOH . L 6 HOH AAA 71 671 67 HOH HOH . L 6 HOH AAA 72 672 12 HOH HOH . L 6 HOH AAA 73 673 43 HOH HOH . L 6 HOH AAA 74 674 176 HOH HOH . L 6 HOH AAA 75 675 155 HOH HOH . L 6 HOH AAA 76 676 39 HOH HOH . L 6 HOH AAA 77 677 230 HOH HOH . L 6 HOH AAA 78 678 124 HOH HOH . L 6 HOH AAA 79 679 94 HOH HOH . L 6 HOH AAA 80 680 203 HOH HOH . L 6 HOH AAA 81 681 96 HOH HOH . L 6 HOH AAA 82 682 175 HOH HOH . L 6 HOH AAA 83 683 84 HOH HOH . L 6 HOH AAA 84 684 118 HOH HOH . L 6 HOH AAA 85 685 166 HOH HOH . L 6 HOH AAA 86 686 87 HOH HOH . L 6 HOH AAA 87 687 190 HOH HOH . L 6 HOH AAA 88 688 216 HOH HOH . L 6 HOH AAA 89 689 161 HOH HOH . L 6 HOH AAA 90 690 163 HOH HOH . L 6 HOH AAA 91 691 86 HOH HOH . L 6 HOH AAA 92 692 125 HOH HOH . L 6 HOH AAA 93 693 167 HOH HOH . L 6 HOH AAA 94 694 162 HOH HOH . L 6 HOH AAA 95 695 200 HOH HOH . L 6 HOH AAA 96 696 65 HOH HOH . L 6 HOH AAA 97 697 219 HOH HOH . L 6 HOH AAA 98 698 207 HOH HOH . L 6 HOH AAA 99 699 88 HOH HOH . M 6 HOH BBB 1 401 109 HOH HOH . M 6 HOH BBB 2 402 196 HOH HOH . M 6 HOH BBB 3 403 47 HOH HOH . M 6 HOH BBB 4 404 193 HOH HOH . M 6 HOH BBB 5 405 182 HOH HOH . M 6 HOH BBB 6 406 30 HOH HOH . M 6 HOH BBB 7 407 20 HOH HOH . M 6 HOH BBB 8 408 214 HOH HOH . M 6 HOH BBB 9 409 141 HOH HOH . M 6 HOH BBB 10 410 133 HOH HOH . M 6 HOH BBB 11 411 168 HOH HOH . M 6 HOH BBB 12 412 106 HOH HOH . M 6 HOH BBB 13 413 78 HOH HOH . M 6 HOH BBB 14 414 3 HOH HOH . M 6 HOH BBB 15 415 1 HOH HOH . M 6 HOH BBB 16 416 9 HOH HOH . M 6 HOH BBB 17 417 35 HOH HOH . M 6 HOH BBB 18 418 38 HOH HOH . M 6 HOH BBB 19 419 18 HOH HOH . M 6 HOH BBB 20 420 180 HOH HOH . M 6 HOH BBB 21 421 49 HOH HOH . M 6 HOH BBB 22 422 140 HOH HOH . M 6 HOH BBB 23 423 121 HOH HOH . M 6 HOH BBB 24 424 79 HOH HOH . M 6 HOH BBB 25 425 205 HOH HOH . M 6 HOH BBB 26 426 54 HOH HOH . M 6 HOH BBB 27 427 178 HOH HOH . M 6 HOH BBB 28 428 197 HOH HOH . M 6 HOH BBB 29 429 240 HOH HOH . M 6 HOH BBB 30 430 11 HOH HOH . M 6 HOH BBB 31 431 10 HOH HOH . M 6 HOH BBB 32 432 51 HOH HOH . M 6 HOH BBB 33 433 227 HOH HOH . M 6 HOH BBB 34 434 17 HOH HOH . M 6 HOH BBB 35 435 115 HOH HOH . M 6 HOH BBB 36 436 50 HOH HOH . M 6 HOH BBB 37 437 53 HOH HOH . M 6 HOH BBB 38 438 113 HOH HOH . M 6 HOH BBB 39 439 63 HOH HOH . M 6 HOH BBB 40 440 165 HOH HOH . M 6 HOH BBB 41 441 8 HOH HOH . M 6 HOH BBB 42 442 69 HOH HOH . M 6 HOH BBB 43 443 37 HOH HOH . M 6 HOH BBB 44 444 236 HOH HOH . M 6 HOH BBB 45 445 61 HOH HOH . M 6 HOH BBB 46 446 119 HOH HOH . M 6 HOH BBB 47 447 177 HOH HOH . M 6 HOH BBB 48 448 56 HOH HOH . M 6 HOH BBB 49 449 195 HOH HOH . M 6 HOH BBB 50 450 171 HOH HOH . M 6 HOH BBB 51 451 71 HOH HOH . M 6 HOH BBB 52 452 114 HOH HOH . M 6 HOH BBB 53 453 183 HOH HOH . M 6 HOH BBB 54 454 104 HOH HOH . M 6 HOH BBB 55 455 135 HOH HOH . M 6 HOH BBB 56 456 211 HOH HOH . M 6 HOH BBB 57 457 120 HOH HOH . M 6 HOH BBB 58 458 201 HOH HOH . M 6 HOH BBB 59 459 76 HOH HOH . M 6 HOH BBB 60 460 221 HOH HOH . M 6 HOH BBB 61 461 60 HOH HOH . M 6 HOH BBB 62 462 147 HOH HOH . M 6 HOH BBB 63 463 116 HOH HOH . M 6 HOH BBB 64 464 110 HOH HOH . M 6 HOH BBB 65 465 108 HOH HOH . M 6 HOH BBB 66 466 137 HOH HOH . M 6 HOH BBB 67 467 144 HOH HOH . M 6 HOH BBB 68 468 157 HOH HOH . M 6 HOH BBB 69 469 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 DSM . . . E 3 24.794 0.262 50.563 0.8 91.56 0 C18 DSM 503 AAA 1 HETATM 2 N N2 DSM . . . E 3 23.394 0.569 50.28 0.8 88.93 0 N2 DSM 503 AAA 1 HETATM 3 C C17 DSM . . . E 3 23.059 1.964 50.596 0.8 64.55 0 C17 DSM 503 AAA 1 HETATM 4 C C16 DSM . . . E 3 23.852 2.508 51.765 0.8 49.59 0 C16 DSM 503 AAA 1 HETATM 5 C C15 DSM . . . E 3 23.045 2.709 53.038 0.8 54.31 0 C15 DSM 503 AAA 1 HETATM 6 N N1 DSM . . . E 3 22.077 1.641 53.292 0.8 43.96 0 N1 DSM 503 AAA 1 HETATM 7 C C14 DSM . . . E 3 22.592 0.371 53.703 0.8 45 0 C14 DSM 503 AAA 1 HETATM 8 C C1 DSM . . . E 3 23.727 0.296 54.5 0.8 36.57 0 C1 DSM 503 AAA 1 HETATM 9 C C2 DSM . . . E 3 24.231 -0.938 54.866 0.8 37.74 0 C2 DSM 503 AAA 1 HETATM 10 C C3 DSM . . . E 3 23.619 -2.085 54.446 0.8 47.03 0 C3 DSM 503 AAA 1 HETATM 11 C C4 DSM . . . E 3 22.487 -2.018 53.654 0.8 51.27 0 C4 DSM 503 AAA 1 HETATM 12 C C13 DSM . . . E 3 21.957 -0.795 53.263 0.8 26.78 0 C13 DSM 503 AAA 1 HETATM 13 C C5 DSM . . . E 3 20.713 -0.855 52.418 0.8 41.93 0 C5 DSM 503 AAA 1 HETATM 14 C C6 DSM . . . E 3 19.84 0.359 52.127 0.8 79 0 C6 DSM 503 AAA 1 HETATM 15 C C12 DSM . . . E 3 19.67 1.426 53.175 0.8 84.17 0 C12 DSM 503 AAA 1 HETATM 16 C C11 DSM . . . E 3 20.787 2.027 53.758 0.8 45.83 0 C11 DSM 503 AAA 1 HETATM 17 C C7 DSM . . . E 3 18.405 1.858 53.561 0.8 71.63 0 C7 DSM 503 AAA 1 HETATM 18 C C8 DSM . . . E 3 18.26 2.855 54.505 0.8 43.26 0 C8 DSM 503 AAA 1 HETATM 19 C C9 DSM . . . E 3 19.367 3.429 55.079 0.8 46.72 0 C9 DSM 503 AAA 1 HETATM 20 C C10 DSM . . . E 3 20.639 3.018 54.716 0.8 46.62 0 C10 DSM 503 AAA 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #