data_7Q34
#
_model_server_result.job_id            -ED9gv7p0RcliIafenlxlA 
_model_server_result.datetime_utc      '2024-10-20 12:35:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7q34 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":203}' 
#
_entry.id    7Q34 
#
_exptl.entry_id    7Q34 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.603 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,4-bis[(E)-(1-ethyl-3,3-dimethyl-indol-2-ylidene)methyl]cyclobutane-1,3-dione 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Q34 
_cell.length_a            44.658 
_cell.length_b            68.019 
_cell.length_c            200.858 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Q34 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I 1 1 
C,D,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 86 1_555 E NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? 
metalc ? metalc2 A NE2 HIS 87 A HIS 86 1_555 F NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc3 F NI NI . A NI 202 1_455 C NE2 HIS 87 C HIS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc4 B O LEU 82 B LEU 81 1_555 I NI NI . B NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc5 H NI NI . B NI 201 1_565 D NE2 HIS 87 D HIS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
#
_chem_comp.formula           'C30 H34 N2 O2' 
_chem_comp.formula_weight    454.603 
_chem_comp.id                8TF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,4-bis[(E)-(1-ethyl-3,3-dimethyl-indol-2-ylidene)methyl]cyclobutane-1,3-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Dye with squaraine-scaffold' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC CAD 8TF sing 1 n n 
CAD NAA 8TF sing 2 n n 
NAA CAE 8TF sing 3 n n 
NAA CAN 8TF sing 4 n n 
CAE CAJ 8TF doub 5 n y 
CAE CAF 8TF sing 6 n y 
CAJ CAI 8TF sing 7 n y 
CAI CAH 8TF doub 8 n y 
CAH CAG 8TF sing 9 n y 
CAG CAF 8TF doub 10 n y 
CAF CAK 8TF sing 11 n n 
CAK CAL 8TF sing 12 n n 
CAK CAM 8TF sing 13 n n 
CAK CAN 8TF sing 14 n n 
CAN CAO 8TF doub 15 e n 
CAO CAP 8TF sing 16 n n 
CAP CBF 8TF sing 17 n n 
CAP CAQ 8TF sing 18 n n 
CBF OBH 8TF doub 19 n n 
CBF CAR 8TF sing 20 n n 
CAQ OBG 8TF doub 21 n n 
CAQ CAR 8TF sing 22 n n 
CAR CAS 8TF sing 23 n n 
CAS CAT 8TF doub 24 e n 
CAT CBC 8TF sing 25 n n 
CAT NAB 8TF sing 26 n n 
CBC CBD 8TF sing 27 n n 
CBC CBE 8TF sing 28 n n 
CBC CAX 8TF sing 29 n n 
CAX CAY 8TF doub 30 n y 
CAX CAW 8TF sing 31 n y 
CAY CAZ 8TF sing 32 n y 
CAZ CBA 8TF doub 33 n y 
CBA CBB 8TF sing 34 n y 
CBB CAW 8TF doub 35 n y 
CAW NAB 8TF sing 36 n n 
NAB CAU 8TF sing 37 n n 
CAU CAV 8TF sing 38 n n 
CAC H1 8TF sing 39 n n 
CAC H2 8TF sing 40 n n 
CAC H3 8TF sing 41 n n 
CAD H4 8TF sing 42 n n 
CAD H5 8TF sing 43 n n 
CAJ H6 8TF sing 44 n n 
CAI H7 8TF sing 45 n n 
CAH H8 8TF sing 46 n n 
CAG H9 8TF sing 47 n n 
CAL H10 8TF sing 48 n n 
CAL H11 8TF sing 49 n n 
CAL H12 8TF sing 50 n n 
CAM H13 8TF sing 51 n n 
CAM H14 8TF sing 52 n n 
CAM H15 8TF sing 53 n n 
CAO H16 8TF sing 54 n n 
CAP H17 8TF sing 55 n n 
CAR H18 8TF sing 56 n n 
CAS H19 8TF sing 57 n n 
CBD H20 8TF sing 58 n n 
CBD H21 8TF sing 59 n n 
CBD H22 8TF sing 60 n n 
CBE H23 8TF sing 61 n n 
CBE H24 8TF sing 62 n n 
CBE H25 8TF sing 63 n n 
CAY H26 8TF sing 64 n n 
CAZ H27 8TF sing 65 n n 
CBA H28 8TF sing 66 n n 
CBB H29 8TF sing 67 n n 
CAU H30 8TF sing 68 n n 
CAU H31 8TF sing 69 n n 
CAV H32 8TF sing 70 n n 
CAV H33 8TF sing 71 n n 
CAV H34 8TF sing 72 n n 
#
_atom_sites.entry_id                     7Q34 
_atom_sites.fract_transf_matrix[1][1]    0.022392 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014702 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004979 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NI A 1 201 1 NI NI . 
F 2 NI A 1 202 3 NI NI . 
G 3 8TF A 1 203 1 8TF SQR . 
H 2 NI B 1 201 2 NI NI . 
I 2 NI B 1 202 4 NI NI . 
J 3 8TF C 1 201 2 8TF SQR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAC 8TF . . . G 3 16.743 -4.474 29.089 1 81.27 ? CAC 8TF 203 A 1 
HETATM 2 C CAD 8TF . . . G 3 15.605 -3.432 29.143 1 99.78 ? CAD 8TF 203 A 1 
HETATM 3 N NAA 8TF . . . G 3 15.942 -1.896 28.722 1 118.8 ? NAA 8TF 203 A 1 
HETATM 4 C CAE 8TF . . . G 3 14.881 -1.001 28.681 1 145.46 ? CAE 8TF 203 A 1 
HETATM 5 C CAJ 8TF . . . G 3 13.545 -1.169 28.876 1 148.14 ? CAJ 8TF 203 A 1 
HETATM 6 C CAI 8TF . . . G 3 12.621 -0.116 28.724 1 135.1 ? CAI 8TF 203 A 1 
HETATM 7 C CAH 8TF . . . G 3 13.065 1.143 28.331 1 125.09 ? CAH 8TF 203 A 1 
HETATM 8 C CAG 8TF . . . G 3 14.43 1.291 28.111 1 129.75 ? CAG 8TF 203 A 1 
HETATM 9 C CAF 8TF . . . G 3 15.285 0.235 28.251 1 149.31 ? CAF 8TF 203 A 1 
HETATM 10 C CAK 8TF . . . G 3 16.683 0.177 28.101 1 141.39 ? CAK 8TF 203 A 1 
HETATM 11 C CAL 8TF . . . G 3 17.247 1.012 26.947 1 143.94 ? CAL 8TF 203 A 1 
HETATM 12 C CAM 8TF . . . G 3 17.197 0.939 29.267 1 149.45 ? CAM 8TF 203 A 1 
HETATM 13 C CAN 8TF . . . G 3 17.052 -1.236 28.235 1 119.51 ? CAN 8TF 203 A 1 
HETATM 14 C CAO 8TF . . . G 3 18.261 -1.888 28.163 1 93.66 ? CAO 8TF 203 A 1 
HETATM 15 C CAP 8TF . . . G 3 19.538 -1.466 27.716 1 96.54 ? CAP 8TF 203 A 1 
HETATM 16 C CBF 8TF . . . G 3 20.668 -2.278 27.627 1 100.61 ? CBF 8TF 203 A 1 
HETATM 17 O OBH 8TF . . . G 3 20.843 -3.467 27.886 1 107.4 ? OBH 8TF 203 A 1 
HETATM 18 C CAQ 8TF . . . G 3 20.335 -0.373 27.257 1 107.36 ? CAQ 8TF 203 A 1 
HETATM 19 O OBG 8TF . . . G 3 20.208 0.845 27.008 1 98.22 ? OBG 8TF 203 A 1 
HETATM 20 C CAR 8TF . . . G 3 21.451 -1.221 27.156 1 101.3 ? CAR 8TF 203 A 1 
HETATM 21 C CAS 8TF . . . G 3 22.756 -0.952 26.723 1 97.21 ? CAS 8TF 203 A 1 
HETATM 22 C CAT 8TF . . . G 3 23.799 -1.813 26.685 1 111.89 ? CAT 8TF 203 A 1 
HETATM 23 C CBC 8TF . . . G 3 23.852 -3.179 27.016 1 112.47 ? CBC 8TF 203 A 1 
HETATM 24 C CBD 8TF . . . G 3 23.592 -3.393 28.512 1 107.45 ? CBD 8TF 203 A 1 
HETATM 25 C CBE 8TF . . . G 3 22.926 -4.042 26.134 1 112.88 ? CBE 8TF 203 A 1 
HETATM 26 C CAX 8TF . . . G 3 25.158 -3.545 26.779 1 119.76 ? CAX 8TF 203 A 1 
HETATM 27 C CAY 8TF . . . G 3 25.746 -4.736 26.941 1 126.25 ? CAY 8TF 203 A 1 
HETATM 28 C CAZ 8TF . . . G 3 27.102 -4.893 26.64 1 135.12 ? CAZ 8TF 203 A 1 
HETATM 29 C CBA 8TF . . . G 3 27.829 -3.795 26.178 1 132.14 ? CBA 8TF 203 A 1 
HETATM 30 C CBB 8TF . . . G 3 27.163 -2.581 26.035 1 137.57 ? CBB 8TF 203 A 1 
HETATM 31 C CAW 8TF . . . G 3 25.849 -2.475 26.338 1 130.4 ? CAW 8TF 203 A 1 
HETATM 32 N NAB 8TF . . . G 3 25.026 -1.418 26.28 1 126.97 ? NAB 8TF 203 A 1 
HETATM 33 C CAU 8TF . . . G 3 25.551 -0.027 25.876 1 118.23 ? CAU 8TF 203 A 1 
HETATM 34 C CAV 8TF . . . G 3 26.184 -0.01 24.469 1 117.67 ? CAV 8TF 203 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           34 
#